-
-
-
Genomic Deletions in Mammalian Cell Lines
TypeCollection...genome engineering. CRISPR/Cas9 is an inexpensive, facile, and efficient genome editing tool that allows ...lysogeny broth (LB) agar plate with 100 μg/ml ampicillin and incubate O/N at 37 °C. Pick 2 - 3 colonies...all steps consists of DMEM supplemented with 2% penicillin/ streptomycin and 1% L-glutamine, which is used... per well for a final volume of 150 μl. This facilitates screening by allowing a multichannel pipette ... -
Viral Production
TypeCollection...performed by the facility that produced the viral vector lot. Contact us to determine which facility produced ...collaboration with viral vector manufacturing facilities, such as the University of Pennsylvania Vector... -
Deisseroth INTRSECT Collection
TypeCollection...cholecystokinin interneurons in the basal amygdala facilitates fear extinction. eNeuro. 6(6). PubMed (Link opens...Expressing Neurons in the Periaqueductal Gray Facilitate the Itch-Scratching Cycle via Article Tac1-Expressing...Expressing Neurons in the Periaqueductal Gray Facilitate the Itch-Scratching Cycle via Descending Regulation... -
Zhang Lab CRISPR Page
TypeCollection...harnessed the type II CRISPR nuclease system to facilitate genome editing in mammalian cells (Cong et al...AAV plasmid for sgRNA cloning. GFP-KASH fusion facilitates FACS sorting of cells and nuclei. Return to top...hSyn-Cre-2A-EGFP-KASH-WPRE-shortPA-ITR This plasmid facilitates Cre/loxP recombination and fluorescence assisted... -
Synthetic Biology - Overview
TypeCollection...leading synthetic biologists around the world to facilitate the sharing of parts and information. Addgene...Multiplexed/Programmable Gene Networks Mascher Lab Bacillus BioBrick Box Mukhopadhyay Lab Efflux Pumps Voigt... -
Microbiology Resources
TypeCollection...islandicus Plasmids for Bacteria Species Anabaena sp. Bacillus sp. Burkholderia sp. Bordetella pertussis Campylobacter...sp. Deinococcus radiodurans Enterococcus sp. Geobacillus sp. Haemophilus influenzae Helicobacter pylori... -
AAV Packaged on Request
TypeCollection...pricing for viral vector preps, which includes MTA facilitation, DNA amplification, and high-quality quality...all-inclusive of several important steps: MTA facilitation for the transfer plasmid, including legal approval... -
Open Enzyme Collection
TypeCollection...marker for all plasmids in this collection is ampicillin. Find more information on the enzymes and protocols...BGT beta-glucosyltransferase 165531 pOpen-UDG UDG Uracil DNA glycosylase 165541 pOpen-Fpg Fpg Formamidopyrimidine... -
COVID-19 Resources
TypeCollection...cell protein 4) is involved in beating of airway cilia.( 7 ) Cytokines - SARS-CoV-2 infection induces a... - Kogiso H, et al, 2020, Int J Mol Sci Airway Ciliary Beating Affected by the Pcp4 Dose-Dependent [Ca... -
Fluorescent Protein Guide: Subcellular Localization
TypeCollection... Voeltz 89472 GFP-hChibby1 Mother Centrioles / Ciliary Base Chibby1 GFP Ken-Ichi Takemaru 89770 pLenti-EGFP-hChibby1...pLenti-EGFP-hChibby1 Mother Centrioles / Ciliary Base Chibby1 EGFP Ken-Ichi Takemaru 118084 pLenti-EB1-EGFP... -
CRISPR 101: Any Base Transversion Editors
TypeBlog Post...apyrimidinic (AP) site. UNG / UDG Uracil DNA N-Glycosylase Removes uracil from DNA, creating an abasic site... Editors. CGBEs first convert a cytosine (C) to uracil (U), just like Cytosine Base Editors (CBEs). But...empty) DNA site using either fused or endogenous Uracil DNA N-glycosylase (UNG) enzymes. Various other ...between the pyrimidine bases (cytosine, thymine, and uracil). Base transversions are edits that convert a purine...leads to the first adenine transversion editors Uracil excision is the most common type of base excision...perhaps analogous engineering of UNG, which excises uracil, could allow it to recognize thymine (T) or cytosine...CGBE C → G Base Editor Converts C → G by fusing a uracil DNA glycosylase to a CBE; the first type of base... -
Protocol - Over-Agar Antibiotic Plating
TypeProtocol...selection curve below. Carbenicillin is used here in place of ampicillin because carbenicillin is more stable,...concentrations of carbenicillin plated over-agar. Control Plate with No Carbenicillin Plate shows a lawn...Plating of Carbenicillin. The above graph displays the stock concentration of Carbenicillin stock used...protocol will focus specifically on selection with carbenicillin; however it can be adapted for any antibiotic...antibiotic High concentration (100 mg/mL, 1000x) carbenicillin stock solution in sterile water (or other antibiotic...coli transformed with a plasmid containing the carbenicillin (amp) resistance gene (or other antibiotic resistance... resistance) Procedure Day 1 Prepare carbenicillin to a concentration of 1 mg/mL – 4 mg/mL in LB medium... -
Deep Mutational Scanning with One Pot Saturation Mutagenesis
TypeBlog Post...(step 2 and 3). Then the uracil-labeled template strand is degraded by uracil DNA glycosylase (UDG) and... in dUTPase and uracil deglycosidase. dUTPase prevents the buildup of dUTP and uracil deglycosidase removes...removes uracil from newly synthesized DNA. Lack of both enzymes leads to a buildup of uracil and the insertion...Supplementary Table 1 of Wrenbeck et al). It uses a uracil labeled wild-type ssDNA as template for a site-...Exonuclease III (ExoIII) (step 4). UDG recognizes uracils that are in DNA and ExoIII recognizes nicked duplexed... insertion of uracil into newly synthesized DNA. This labeled ssDNA is packaged into phage and then extracted...taking a couple days to generate the phage-derived uracil labeled template, this method requires further ... -
Plasmids 101: Choosing an Antibiotic Resistance Gene
TypeBlog Post...environments. Carbenicillin Carbenicillin, colloquially known as carb, belongs to the penicillin family of...issue. The genes and their antibiotics Ampicillin Ampicillin, often just called amp, is the historical...derivative of the more widely known antibiotic, penicillin, and is a beta-lactam that inhibits cell wall...protein synthesis. The kan resistance gene, NPTII, facilitates phosphorylation of kan, which inactivates it.... with most bacteria? No satellite colonies? Ampicillin Fair {% icon icon_set="fontawesome-5.14.0" name...purpose="decorative" title="Check icon" %} Carbenicillin Excellent {% icon icon_set="fontawesome-5.14.0... -
CRISPR 101: Cytosine Transversion Editors
TypeBlog Post... / UDG Uracil DNA N-Glycosylase Removes uracil from DNA, creating an abasic site. UGI Uracil Glycosylase...removed the uracil glycosylase inhibitor (UGI) components, which inhibit BER during cytosine-to-uracil editing...between the pyrimidine bases (cytosine, thymine, and uracil). Base transversions are edits that convert a purine... editors, like calling it the “edited strand.” Uracil excision repair leads to the first base transversion...cytidine (C) deamination, converting the C base to uracil (U). This is the same chemical reaction performed...editing, and instead introduced its opposite, a uracil DNA N-glycosylase (UNG) from E. coli. The resulting...Glycosylase Inhibitor Inhibits UNG to preserve uracil bases in DNA. References Chen, L., Park, J. E., Paa... -
Brain Initiative Collection
TypeCollection...Recombinant mAb Plasmid Collection . The NeuroMab Facility and James Trimmer have produced monoclonal antibodies...Service . Addgene provides a viral service to help facilitate scientific research. Addgene's AAV are made from... -
Protocol - pLKO.1 – TRC Cloning Vector
TypeProtocol...agar plates containing 100 μg/mL ampicillin or carbenicillin (an ampicillin analog). Due to the long terminal...Bioanalytical: #AB01200-02000 Ampicillin VWR: #7177-48-2. Use at 100 μg/mL. Carbenicillin VWR: #80030-956. Use ...from each ligation into LB + 100 μg/mL ampicillin or carbenicillin. Day 2: 2. Spin down the cultures and...and cool to 55°C. Add 1mL of 100mg/mL ampicillin or carbenicillin to obtain a final concentration of 100...tract, cPPT, improves transduction efficiency by facilitating nuclear import of the vector’s preintegration...ori f1 bacterial origin of replication. Amp R Ampicillin resistance gene for selection of pLKO.1 plasmid...#11995 Fetal Bovine Serum (FBS) Invitrogen: #16000 Penicillin/Streptomycin Invitrogen: #15140-122 Polypropylene... -
Trimmer Lab NeuroMab Collection
TypeCollection...The NeuroMab Facility and James Trimmer have produced monoclonal antibodies validated for neuroscience...Protocols References The UC Davis/NIH NeuroMab Facility (Link opens in a new window) together with the...distinct IgG subclass from the conventional mAb to facilitate multiplex labeling with subclass-specific secondary...collection . Protocols The UC Davis/NIH NeuroMab Facility has several protocols available that may be helpful...