Brian Kuhlman Lab Materials

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Title	Authors	Publication
A conserved set of mutations for stabilizing soluble envelope protein dimers from dengue and Zika viruses to advance the development of subunit vaccines.	Phan TTN, Hvasta MG, Kudlacek ST, Thiono DJ, Tripathy A, Nicely NI, de Silva AM, Kuhlman B	J Biol Chem. 2022 Jul;298(7):102079. doi: 10.1016/j.jbc.2022.102079. Epub 2022 May 26.
An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation.	Lerner AM, Hepperla AJ, Keele GR, Meriesh HA, Yumerefendi H, Restrepo D, Zimmerman S, Bear JE, Kuhlman B, Davis IJ, Strahl BD	Genome Res. 2020 Nov;30(11):1605-1617. doi: 10.1101/gr.264283.120. Epub 2020 Oct 5.
Control of Protein Activity and Cell Fate Specification via Light-Mediated Nuclear Translocation.	Yumerefendi H, Dickinson DJ, Wang H, Zimmerman SP, Bear JE, Goldstein B, Hahn K, Kuhlman B	PLoS One. 2015 Jun 17;10(6):e0128443. doi: 10.1371/journal.pone.0128443. eCollection 2015.
Designed, highly expressing, thermostable dengue virus 2 envelope protein dimers elicit quaternary epitope antibodies.	Kudlacek ST, Metz S, Thiono D, Payne AM, Phan TTN, Tian S, Forsberg LJ, Maguire J, Seim I, Zhang S, Tripathy A, Harrison J, Nicely NI, Soman S, McCracken MK, Gromowski GD, Jarman RG, Premkumar L, de Silva AM, Kuhlman B	Sci Adv. 2021 Oct 15;7(42):eabg4084. doi: 10.1126/sciadv.abg4084. Epub 2021 Oct 15.
Designer installation of a substrate recruitment domain to tailor enzyme specificity.	Park R, Ongpipattanakul C, Nair SK, Bowers AA, Kuhlman B	Nat Chem Biol. 2023 Apr;19(4):460-467. doi: 10.1038/s41589-022-01206-0. Epub 2022 Dec 12.
Designing photoswitchable peptides using the AsLOV2 domain.	Lungu OI, Hallett RA, Choi EJ, Aiken MJ, Hahn KM, Kuhlman B	Chem Biol. 2012 Apr 20;19(4):507-17.
Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins.	Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B	Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
Engineering Improved Photoswitches for the Control of Nucleocytoplasmic Distribution.	Lerner AM, Yumerefendi H, Goudy OJ, Strahl BD, Kuhlman B	ACS Synth Biol. 2018 Nov 29. doi: 10.1021/acssynbio.8b00368.
Kuhlman Lab Plasmids 2024	(unpublished)
Light-induced nuclear export reveals rapid dynamics of epigenetic modifications.	Yumerefendi H, Lerner AM, Zimmerman SP, Hahn K, Bear JE, Strahl BD, Kuhlman B	Nat Chem Biol. 2016 Jun;12(6):399-401. doi: 10.1038/nchembio.2068. Epub 2016 Apr 18.

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	ID	Plasmid	Gene/Insert	Vector Type	Publication
100.8.831499.60411	60411	pLL7.0: Venus-iLID-CAAX (from KRas4B)	Venus-iLID-CAAX	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
100.6.804292.60413	60413	pLL7.0: Venus-iLID-Mito (From ActA)	Venus-iLID-Mito	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
100.4.822187.60415	60415	pLL7.0: tgRFPt-SSPB WT	tgRFPt-SSPB	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
100.2.833212.60416	60416	pLL7.0: tgRFPt-SSPB R73Q	tgRFPt-SSPB R73Q	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
50.1.077755.60409	60409	pQE-80L MBP-SspB Nano	SspB nano	Bacterial Expression	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
20.1.451413.60785	60785	pTriEx-mCherry::LANS4	LANS4	Mammalian Expression, Bacterial Expression, Insect Expression	Control of Protein Activity and Cell Fate Specification via Light-Mediated Nuclear Translocation. PLoS One. 2015 Jun 17;10(6):e0128443. doi: 10.1371/journal.pone.0128443. eCollection 2015.
20.1.061666.60410	60410	pQE-80L MBP-SspB Micro	SspB micro	Bacterial Expression	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
20.0.916393.60408	60408	pQE-80L iLID (C530M)	iLID C530M	Bacterial Expression	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
20.0.566320.60419	60419	pLL7.0: hITSN1(1159-1509)-tgRFPt-SSPB WT	hITSN1-tgRFPt-SSPB (ITSN1 Synthetic, Human)	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.
20.0.555605.60418	60418	pLL7.0: mTiam1(64-437)-tgRFPt-SSPB R73Q	mTiam1-tgRFPt-SSPB R73Q	Mammalian Expression, Lentiviral, Cre/Lox	Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):112-7. doi: 10.1073/pnas.1417910112. Epub 2014 Dec 22.