...array architecture the DAP array, short for “drive-and-process.” To optimize DAP use, they developed a... and the activity to release gRNAs from DAP array.7 Using DAP arrays with a variety of base editors, the...Schematic of multiplex gene editing with DAP array   Use DAP arrays can enable efficient multiplex ...leader sequences can be used together in DAP array. To construct DAP array for multiplex gene editing applications...Sherry Gao’s lab at Rice University has developed DAP arrays for efficient multiplex base editing (MBE)... prime editing (MPE) with only minimal payloads. DAP array  Although CRISPR-Cas12a, with abilities to ...generalizable method to acquire the most effective DAP array with a given tRNA (derived from human or plant...

...expected in patient samples (e.g.: blood, urine). Adapting toehold switches for Zika detection We and other...

...drag-and-drop CRISPR editing tool for large inserts.  DAP arrays for multiplex gene editing: Guest blogger ...

...lack the ability to synthesize diaminopimelic acid (DAP), a component of the cell wall. Once in the recipient...the recipient's genome. Antibiotic plates lacking DAP select against donor bacteria and for recipients ...interference (CRISPRi) has been limited to lab-adapted bacteria because it has been challenging to introduce...for using CRISPRi in many types of bacteria: lab-adapted, environmental isolated, and disease-associated...

...more quickly and efficiently, they’ve recently adapted the CRISPR/Cas9 system for protein tagging. We .../crispr/tagging. Addgene: What motivated you to adapt CRISPR for use in protein tagging? Myers: Our labs...transcription factors. Our groups got together to adapt CRISPR for tagging experiments and it’s already ... improvements in efficiency and throughput. In adapting the CRISPR/Cas system, what we are doing is adding... is so flexible. Other investigators can easily adapt these vectors for use with their favorite selection...who’ve developed their own system or who use and adapt our reagents to think about adding them to Addgene...

... all CRISPR types; the fast evolution of these adaptive bacterial and archaeal immune systems has led ...suspected that they don’t carry out the same types of adaptive immune functions that other CRISPR types do, due...resembles cas10. All type IV subtypes are missing adaptation genes, Cas1 and Cas2, which are critical for ...pyogenes) belonging in II-A. Cas9 was the first to be adapted for use in mammalian systems, with the landmark... become the most engineered Cas enzyme, with adaptations for increased fidelity, activation/repression...

...SF-Venus-iGluSnFR.A184V, iGluSnFR3 v82, and iGluSnFR3 v857. Image adapted from Aggarwal et al., Figure 1   Increased...curves for the different iGluSnFR variants. Image adapted from Aggarwal et al…, Supplementary Figure 3. .../F0 for the different iGluSnFR variants. Image adapted from Aggarwal et al…, Supplementary Figure 2. ... PDGFR, GPI, and SGZ display constructs. Image adapted from Aggarwal et al… Figure 4. PDGFR is a C-terminal...

...weeks after herbicide was applied to both plants. Adapted from Vu et al., 2024 bioRxiv, under CC-BY-NC-ND... B) Protein expression and labeling procedure. Adapted from Smith et al. 2024 under a CC-BY 4.0 license...(C) is indicated; red line is exponential fit. Adapted with permission from Hao and Lee et al., 2024. ...non-neurodegenerative diseases (Diabetes & cancer). Image adapted from Wu and Wang 2024 under a CC-BY 4.0 license...

...purification of a specific genomic region, numerous adaptations of this system have been made in different fields...specific genomic region has also recently been adapted to isolate genomic loci in bacteria (Fujita et ...also has great potential for improvements and adaptations that can provide an increased understanding of...programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity." Science337.6096 (2012): 816...

...Schematic of Opto-katanin’s use in cells. Images adapted from Meiring et al., 2022, under CC-BY 4.0 license...blue light illumination. Scale bar 25 µm. Images adapted from Mahlandt et al., 2023, under CC-BY 4.0 license...vesicle trafficking via CRY2-CIB1 clustering. Image adapted from Aljiboury et al., 2023, under CC-BY 4.0 license...colocalizing with SuperPLDx30. Scale bar 10 µm. Images adapted from Tei et al. 2022, bioRxiv, under a CC-BY-NC-ND...

... Miller, Corwin, et al. "Adaptation of Enterococcus faecalis to daptomycin reveals an ordered progression...populations. This kit consists of a 48 plasmid adapter library, with each plasmid carrying a unique barcoded...lead to surprisingly large fitness effects during adaptive evolution of antibiotic resistance." Proceedings...

...originally utilized CRISPR/Cas as a powerful and adaptive defense strategy against life-threatening viruses...scientists to hypothesize that prokaryotes developed an adaptive immune system that utilized various cas genes ... of anti-CRISPR genes in phages The CRISPR/Cas adaptive immune system seems like the winning ticket to...

...structure. I quickly learned that my approach needed to adapt based on individual needs. For instance, I had one...projects autonomously. Failing to recognize and adapt to these differences could have led to frustration...experienced this firsthand when it took me some time to adapt to the communication style of a new, junior team...

...Executive Director changed twice. I had to learn how to adapt to different situations and, in particular, to different...predecessors. Changes were implemented and I had to adapt accordingly. For example, the quarterly and annual... would come necessary changes. I also learnt to adapt my leadership style according to the needs of my...

...method for genomic insertion. PITCh can also be adapted for whole-plasmid integration if you’d like to ...from a given promoter, and the technique can be adapted to other transgenes. It’s important to note that...increased versatility, it would be advantageous to adapt PITCh to insert genes into AAVS1, the “safe harbor...

...represent a functional CRISPR nuclease that could be adapted for genome editing. The use of a different nuclease... the simplest CRISPR systems and the easiest to adapt to genome editing, but the introduction of type ...learn about CRISPR biology. Later work, like the adaptation of Cas13 to RNA targeting and RNA editing, has...

...acids at the atomolar level. The Zhang lab has adapted natural RNase activity of the Cas13 protein to ...detection signal for a single target. SHERLOCKv2 was adapted so that a cleaved reporter could be detected on...built upon. Mammoth Biosciences and UCSF recently adapted the DETECTR platform to detect SARS-CoV-2 using...

... of different basic BE technologies and their adaptation for plant genome editing. Cytosine base editors... at The Pennsylvania State University (PSU) is adapting and improving base editing platforms for plant...editing using hybrid prokaryotic and vertebrate adaptive immune systems." Science 353.6305 (2016): aaf8729...

.../Cas9 for gene editing has expanded since its adaptation for use in mammalian cells in 2012-2013. Researchers... gene (although it has been quite successfully adapted for use in screening experiments as well). Therefore...fluorescence indicates a more successful gRNA design. Adapted from Mashiko et al., 2014. Not all gRNA’s are...

... Figure 1: The Design-Build-Test-Learn cycle adapted for video making.   Cycle One: The Ironing ...on-camera presentations and interviews. But how can I adapt this setup for the lab, so we can get back to producing...shoot. I also added a teleprompter to the mix, adapting the setup to run some remote interviews, so the...