...of happen with Cas13. CRISPR-Csm degrades both nuclear and cytoplasmic mRNA with 90-99% knockdown efficiency...CRISPR-Csm presents an attractive alternative for nuclear-RNA targeting, where siRNAs are ineffective and...expression changes of non-target genes and RNA-seq of a nuclear (MALAT1) and cytoplasmic (CKB1) RNA target. Adapted...

...proliferator-activated receptor delta FAAR, MGC3931, NR1C2, NUC1, NUCI, NUCII, PPAR-beta, PPARB PPARG peroxisome proliferator-activated...HLALS NFYA nuclear transcription factor Y, alpha CBF-A, CBF-B, FLJ11236, HAP2, NF-YA NFYB nuclear transcription...FLJ37489 VAV1 vav 1 guanine nucleotide exchange factor VAV VAV2 vav 2 guanine nucleotide exchange factor - VAV3...NROB1 NR0B2 nuclear receptor subfamily 0, group B, member 2 FLJ17090, SHP, SHP1 NR1D1 nuclear receptor subfamily...hRev NR1D2 nuclear receptor subfamily 1, group D, member 2 BD73, EAR-1R, RVR NR1H2 nuclear receptor subfamily... UNR NR1H3 nuclear receptor subfamily 1, group H, member 3 LXR-a, LXRA, RLD-1 NR1H4 nuclear receptor subfamily...MGC97144, MGC97209 NR2C1 nuclear receptor subfamily 2, group C, member 1 TR2 NR2C2 nuclear receptor subfamily...

...of anti-FLAG-FB-GFP binding to FLAG-tag H2B for nuclear localization. (c) Applications of anti-FLAG-FB-...anti-FLAG-FB-GFP labeling various targets with nuclear (top, 4x-FLAG-mCherry-H2B), cytoskeletal (middle, 4xFLAG-mCherry-β-actin... editing, while gene editing can be done via a nuclease-active CasMINI. This small yet powerful system...

...and does not consider the missing or damaged nucleotides that are common to biological sources of DSBs...factors, including polymerases (Pol μ and Pol λ), nucleases (Artemis), and structure-specific end cleaning...the Cas9 DSB (blunt or near-blunt ends without nucleotide damage) such products are rare, probably accounting...

...editors with editing windows as small as 1-2 nucleotides! To reduce off-target effects associated with...they purified HF-BE3 protein for delivery in ribonucleoprotein particles (RNPs) to both zebrafish embryos...species. This toolkit includes TALEN and CRISPR nucleases, nickases, and gene activation systems as well... the amount of time that Cas9 is active in the nucleus to reduce off-target gene editing. The bacterial...

... and its organization within the nucleus, also called the 4D nucleome. Visualizing specific loci has historically...loci, a major benchmark in characterizing the 4D nucleome. CRISPRainbow: Scaling up to 6 colors + white ...

... of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18:5294–5299...effect of ammonium sulfate on the activity of ribonuclease A. Biochimica et Biophysica Acta (BBA) - Enzymology...

... As a genome conversion in the transduced cell nucleus, the single-to-double stranded conversion of the...of symmetry. After uncoating in the target cell nucleus, this DNA structure can readily fold into transcriptionally...DNA folds back on itself to become dsDNA in the nucleus and is a good option if you need rapid transgene...

...rarely circulates, but upon viral infection, this nucleic acid can build up. The foreign dsRNA activates ...Transposable elements such as long/short interspersed nuclear elements can generate dsRNA by bidirectional transcription...constantly occurring throughout a single cell, so these nucleic acid hybrids are always around. R-loops are particularly...

...DNA cleavage Example: AcrIIC1 binds to the HNH endonuclease domain of Cas9 and prevents target DNA cleavage...off-target edits of base editors, which convert a nucleotide base pair to another base pair at a specific ...effects and cytotoxicity that result from excessive nuclease activity in tissues (Li et al., 2018). 4. Selection...

...protein – but were very confused because the HNH nuclease active site wasn’t even close to its reported ... DNA strand, and then activate two different endonuclease active sites. Fortunately, there is never just...displaced non-target DNA strand and shows the HNH nuclease domain swung around in close juxtaposition to ...

...someone grabs the wrong plasmid? What if bacteria snuck into the prep during the production process? These... Each contig is then BLASTed against the NCBI nucleotide collection database, and it may also be aligned...Next-generation Sequencing. Molecular Therapy - Nucleic Acids 4:e260 . https://doi.org/10.1038/mtna.2015.32...

...stage with much-lauded CRISPR-Cas9 is DNA-guided endonuclease NgAgo! We'll discuss how NgAgo is faring with...mammalian cells and one which diminishes the endonuclease activity of the enzyme. In vivo, only nascent...someone came up with a mutant NgAgo (or a novel endonuclease) protein that can form a complex with a 5’-P-ssDNA...

...to insert an endonuclease gene within its own cut site1. In heterozygotes, the endonuclease cuts the wild-type...ensuring that all future offspring inherit the endonuclease gene. As we pointed out last year2, delivering...

...mTagRFP-T Nucleophosmin Nucleolus (granular component) 133963 UBTF-HaloTag AICSDP-80 HaloTag Nucleolar transcription...Golgi 109122 NPM1-mEGFP AICSDP-50 mEGFP Nucleophosmin Nucleolus (granular component) 109120 GJA1-mEGFP ...Cohesins 114407 NUP153-mEGFP AICSDP-50 mEGFP Nucleoporin Nup153 Nuclear pores 114410 FUS-mEGFP AICSDP-64 mEGFP...transcription factor UBF Nucleolus (fibrillar center) 133964 SON-mEGFP AICSDP-82 mEGFP SON Nuclear speckles 159744...Microtubules 87422 LMNB1-mEGFP AICSDP-10 mEGFP Lamin B1 Nuclear envelope 87423 TOMM20-mEGFP AICSDP-8 mEGFP Tom20...reticulum 87427 FBL-mEGFP AICSDP-13 mEGFP Fibrillarin Nucleolus (dense fibrillar component) 87428 MYH10-mEGFP ...114403 LMNB1-mTagRFP-T AICSDP-29 mTagRFPT Lamin B1 Nuclear envelope 114404 AAVS1-mEGFP (PGK) AICSDP-36 mEGFP...

...commonly result in a complete loss of function while nuclease-deactivated Cas9 (dCas9) can be tethered to a ...which contains multiple point mutations in the nuclease domain. These mutations result in an inactive ...CRISPRa, sgRNAs were targeted between 150-75 nucleotides upstream of the TSS. Similar to the Brunello ...

...editing with various spacer lengths from 30-84 nucleotides, and designated this system REPAIRv1. Using next-generation...had A-to-I off-target edits around the targeted nucleotide. Introduction of guanine-mismatches in the guide... at Addgene. Gootenberg, Jonathan S., et al. "Nucleic acid detection with CRISPR-Cas13a/C2c2." Science...

...on the size of the knock-in. Single strand oligonucleotide donors (ssODNs) with homology arms as short...need to be used due to synthesis limits of oligonucleotides. These donors traditionally have larger homology...Cas break for HR is to fuse an HR protein to the nuclease. Early HR factors fused to Cas9 have been shown...

...modification, protein degradation, access to the nucleus in eukaryotic screens and fusion configuration....cells, fusion proteins must gain access to the nucleus. To circumvent this requirement for transmembrane...system for the pathogenic fungus Candida albicans. Nucleic Acids Res. 2010;38(19):e184. Pubmed PMID: 20719741...

... the ICE software tool soon. To request other nucleases or other features and functionalities, please ...Guide Target - This is the user-defined 17-23 nucleotide sequence of the DNA-targeting region of the guide...Protospacer Adjacent Motif (PAM) sequence for the nuclease used. Currently, ICE is configured for Cas9 fromStreptococcus...