Addgene MBP-MEK1 S218TAG Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: MBP-MEK1 S218TAG Sequencing Result

Map View

800 600 400 200 End (889) AhdI (802) NspI (754) PciI - AflIII (750) BssSI - BssSαI (663) BfuAI - BspMI (609) MflI * - BstYI (555) BciVI (554) PfoI (546) CsiI - SexAI * (519) BsmI (428) BstAPI (415) BsgI (401) BsrFI (376) BmrI (293) BstBI (267) EarI (139) NdeI (63) AvaI - BsoBI (23) Start (0) Factor Xa site TEV site MBP-MEK1 S218TAG 889 bp

Sequence View

BsoBIAvaIStart (0) 5ʹ 3ʹ 60 1 IEGR 1 5 ENLYFQG Factor Xa site TEV site NNNNNNNLGIEGRENLYFQG VIVIVVVEPDLSPFIQIKLT c a a c a a t a a c a a t a a c a a c a a c c t c g g g a t c g a g g g a a g g g a a a a t c t g t a t t t t c a a g g g t t g t t a t t g t t a t t g t t g t t g g a g c c c t a g c t c c c t t c c c t t t t a g a c a t a a a a g t t c c

NdeI 120 (in frame with TEV site) HMPKKKPTPIQLNPAPDGSA TEV site HMPKKKPTPIQLNPAPDGSA MHRLLFRGRDLQVRSRVTRS t c a t a t g c c g a a g a a g a a a c c g a c c c c g a t c c a g c t g a a c c c g g c t c c g g a c g g t t c t g c a g t a t a c g g c t t c t t c t t t g g c t g g g g c t a g g t c g a c t t g g g c c g a g g c c t g c c a a g a c g

EarI 180 (in frame with TEV site) VNGTSSAETNLEALQKKLEE VNGTSSAETNLEALQKKLEE NVAGRRSFGVQFSQLLFQFF t g t t a a c g g c a c c t c t t c t g c t g a a a c c a a c c t g g a a g c t c t g c a a a a g a a a c t g g a a g a a c a a t t g c c g t g g a g a a g a c g a c t t t g g t t g g a c c t t c g a g a c g t t t t c t t t g a c c t t c t

240 (in frame with TEV site) LELDEQQRKRLEAFLTQKQK LELDEQQRKRLEAFLTQKQK QFQVFLLTFTQFREQGLFLF a c t g g a a c t g g a c g a a c a g c a g c g t a a a c g t c t g g a a g c g t t c c t g a c c c a g a a a c a g a a t g a c c t t g a c c t g c t t g t c g t c g c a t t t g c a g a c c t t c g c a a g g a c t g g g t c t t t g t c t t

BmrIBstBI 300 (in frame with TEV site) VGELKDDDFEKISELGAGNG VGELKDDDFEKISELGAGNG NTFQFVVVEFFDRFQTSTVT a g t t g g t g a a c t g a a a g a c g a c g a c t t c g a a a a a a t c t c t g a a c t g g g t g c t g g t a a c g g t c a a c c a c t t g a c t t t c t g c t g c t g a a g c t t t t t t a g a g a c t t g a c c c a c g a c c a t t g c c

360 (in frame with TEV site) GVVFKVSHKPSGLVMARKLI GVVFKVSHKPSGLVMARKLI TNNEFNRVFRGTQNHSTFQD t g g t g t t g t t t t c a a a g t t t c t c a c a a a c c g t c c g g t c t g g t t a t g g c t c g t a a a c t g a t a c c a c a a c a a a a g t t t c a a a g a g t g t t t g g c a g g c c a g a c c a a t a c c g a g c a t t t g a c t a

BstAPIBsgIBsrFI 420 (in frame with TEV site) HLEIKPAIRNQIIRELQVLH HLEIKPAIRNQIIRELQVLH VQFDFRSDTVLDDTFQLNQV c c a c c t g g a a a t c a a a c c g g c t a t c c g t a a c c a g a t c a t c c g t g a a c t g c a a g t t c t g c a g g t g g a c c t t t a g t t t g g c c g a t a g g c a t t g g t c t a g t a g g c a c t t g a c g t t c a a g a c g t

BsmI 480 (in frame with TEV site) ECNSPYIVGFYGAFYSDGEI ECNSPYIVGFYGAFYSDGEI FAVRRVDNTEVTSEVRVTFD c g a a t g c a a c t c t c c g t a c a t c g t t g g t t t c t a c g g t g c t t t c t a c t c t g a c g g t g a a a t g c t t a c g t t g a g a g g c a t g t a g c a a c c a a a g a t g c c a c g a a a g a t g a g a c t g c c a c t t t a

SexAI*CsiI 540 (in frame with TEV site) SICMEHMDGGSLDQVLKKAG SICMEHMDGGSLDQVLKKAG RDAHFVHVTTRQVLNQFFST c t c t a t c t g c a t g g a a c a c a t g g a c g g t g g t t c t c t g g a c c a g g t t c t g a a a a a a g c t g g g a g a t a g a c g t a c c t t g t g t a c c t g c c a c c a a g a g a c c t g g t c c a a g a c t t t t t t c g a c c

BciVIBstYIMflI*PfoI 600 (in frame with TEV site) RIPEQILGKVSIAVIKGLTY RIPEQILGKVSIAVIKGLTY TDRFLDQTFNRDSNDFTQGV t c g t a t c c c g g a a c a g a t c c t g g g t a a a g t t t c t a t c g c t g t t a t c a a a g g t c t g a c c t a a g c a t a g g g c c t t g t c t a g g a c c c a t t t c a a a g a t a g c g a c a a t a g t t t c c a g a c t g g a t

BspMIBfuAI 660 (in frame with TEV site) LREKHKIMHRDVKPSNILVN LREKHKIMHRDVKPSNILVN QTFFVFDHVTVNFRRVDQNV c c t g c g t g a a a a a c a c a a a a t c a t g c a c c g t g a c g t t a a a c c g t c t a a c a t c c t g g t t a a g g a c g c a c t t t t t g t g t t t t a g t a c g t g g c a c t g c a a t t t g g c a g a t t g t a g g a c c a a t t

BssSαIBssSI 720 (in frame with TEV site) SRGEIKLCDFGVSGQLID* SRGEIKLCDFGVSGQLID* RTTFDFQAVETNRTLQDVLH c t c t c g t g g t g a a a t c a a a c t g t g c g a c t t c g g t g t t t c t g g t c a g c t g a t c g a c t a g a t g a g a g c a c c a c t t t a g t t t g a c a c g c t g a a g c c a c a a a g a c c a g t c g a c t a g c t g a t c t a

AflIIIPciINspI 780 SVRENAGTRVHRRFTQLAGV g g c t a a c t c t t t c g t t g g c a c c c g t t c t t a c a t g t c t c c g g a a c g t c t g c a a g g c a c c c a c c g a t t g a g a a a g c a a c c g t g g g c a a g a a t g t a c a g a g g c c t t g c a g a c g t t c c g t g g g t

AhdI 840 VRNLRVDPRHTQRQNFHSNT c t a c t c t g t t c a g t c t g a c a t c t g g t c t a t g g g t c t g t c t c t g g t t g a a a t g g c t g t t g g g a t g a g a c a a g t c a g a c t g t a g a c c a g a t a c c c a g a c a g a g a c c a a c t t t a c c g a c a a c c

End (889) 3ʹ 5ʹ 889 TVRDRRRVSFFQFQHE t c g t t a c c c g a t c c c g c c g c c g g a c g c t a a a g a a c t g g a a c t g a t g t t c a g c a a t g g g c t a g g g c g g c g g c c t g c g a t t t c t t g a c c t t g a c t a c a a g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.