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  1. Using AAV for Neuronal Tracing

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    Blog Post
    ...signaling is likely to have). Anterograde tracing outlines neurons from their cell bodies to the terminals...terminals of their axons; while retrograde tracing outlines neurons in the opposite direction, from the terminals... dynein, while anterograde transport relies on kinesin. Different rates of speed for various forms of ...predominately anterograde tracing, biotinylated dextran amines (Veenman et al., 1992) or fluorescent molecules... achieved by using optogenetically controlled transgenes, in combination with conditional transgenic mice... M., and Schnell, M. (2008). Concepts in the pathogenesis of rabies. Future Virol 3(5), 481–490. PubMed...Ho, A., Nicholas, E., Hirokawa, K.E., Bohn, P., Joines, K.M., Peng, H., Hawrylycz, M.J., Phillips, J.W...
  2. Cancer and the Immune System: Deciphering the Relationship

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    Blog Post
    ...producing landslide after landslide, only adding more stones to the field. Fortunately, our bodies have been... (Th) cells. These cells produce inflammatory cytokines - interleukin (IL)-12 and interferon gamma (IFNγ... promotes the production of VEGF to increase angiogenesis around the tumor. This in turn regulates the...cancer. Surgical removal causes increases in tumor cytokines like TGFβ and IL-6. However, when strengthened...response. Antibodies targeting the tumor-augmenting cytokines produced in the tumor microenvironment TGFβ, IL...necroptotic tumor cells have also been tested as vaccines and therapeutics. Their uptake by DCs is increased...marker blockade and suppression of tumor-aiding cytokines, for example, will more broadly activate the immune...
  3. dTAG - You're it!

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    Blog Post
    ...experiments. Test dTAG molecule toxicity in new cell lines Treat parental cells (or cells expressing a control...FKBP12F36V-fusion chimera of interest. In the cell lines we have evaluated to date, we observed little to...FKBP12F36V fusion chimera degradation. In the cell lines we have evaluated to date, we have not observed ...was employed to evaluate degradation of ENL. Cell lines were engineered to express ENL-FKBP12F36V and endogenous... employed to evaluate degradation of MELK. Cell lines were engineered to express FKBP12F36V-MELK and endogenous...was employed to evaluate degradation of YY1. Cell lines were engineered to express YY1-FKBP12F36V using ...
  4. The Breast Cancer Microenvironment: A Tumor’s Backstage Team

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    Blog Post
    ...are tumor microenvironments made of?  A tumor’s genesis is divided into 3 phases: initiation, progression...active regions, microenvironments shape a tumor’s evasiveness, evolution, and response to treatment. Some microenvironment...transport miRNA from drug-resistant cells to sensitive ones. Though this process is not fully understood, a ...formation by inhibiting cell growth, invasion, and angiogenesis (Allinen et al., 2004). In fact, Sanford H. ...influence tumor microenvironments: immunology and angiogenesis (Witz et al., 2009). Then, scientists began ...Fernando Schmitt. "Microenvironment in breast tumorigenesis: Friend or foe?." Histology and histopathology...
  5. Antibodies 101: Conjugation

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    Blog Post
    ...either through a chromogenic or chemiluminescent reaction. Chemiluminescence, which is light produced by ...the primary amine groups from lysines, sulfhydryl groups from cysteines, or carbohydrates from glycosylation... found throughout the antibody. 2) Endogenous cysteines, such as those that make up the disulfide bonds...antibody (Mueller, et al., 1988). If some of those lysines are in the antigen binding region or even just ...
  6. Hot Plasmids - October 2020

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    Blog Post
    ...So how can you use CRISPR to introduce large FP genes into C. elegans? By using a split FP approach. Split-wrmScarlet... fluoresce. The team engineered C. elegans cell lines to express wrmScarlet1-10 unattached to any other... validated this tool by targeting six different genes whose protein products have distinct localizations... library that targets human glycosyltransferase genes and other proteins related to cellular glycosylation...deletes human alternative cassette exons and disrupts genes with alternative exons. Get the library from Addgene... format! The library inhibits over 18,000 human genes. Find the lentiviral preps at Addgene hSyn1-SIO-stGtACR1...
  7. Popular Retroviral Vectors and Their Uses in Scientific Research

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    ...into ‘split-vector systems’ by separating viral genes and transgene expression across several plasmids...that allow functional screening of thousands of genes in genome-wide experiments. Gamma-retroviral vs...direct the cellular RNAi machinery to silence target genes. This empty MuLV vector from the Weinberg lab enables...find more lentiviral expression vectors (empty backbones) here. Cloning and expressing new shRNA sequences...lentiviral backbone from the Zhang lab expressing S. pyogenes Cas9 and a gRNA cassette. It can be used to produce...studies. The ability to simultaneously alter multiple genes via infection with a single ecotropic or amphotropic...
  8. CRISPR in the Clinic

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    ... to, ones targeting muscular dystrophy, cardiovascular disease, inflammatory diseases, blindness, and ... cancer treatment by traditional gene therapy pipelines (viral), and researchers are currently working...many more in the earlier stages of the pipeline, ones that have experienced hiccups (either clinically...challenges with therapies involve patient safety, effectiveness, and delivery. Patient safety is important for...concerning when using a systemic approach. Regarding effectiveness, if the editing frequency isn’t high enough ...
  9. Antibodies 101: Stripping and Reprobing Western Blots

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    ...stripping to remove, so start with the weaker binding ones first to preserve your sample. Pro tip! Because ...reprobing works best with western blots that use chemiluminescent or fluorescent detection, like horseradish...protein retention. Following this step, most PVDF membranes recommend re-wetting with methanol before rinsing...the membrane you are using. Dry nitrocellulose membranes are brittle, so proceed with caution. Unlike PVDF...your own stripping solution using a recipe like the ones shared by Bio-Techne, ThermoFisher, or Millipore...remains, whether that involves adding fresh chemiluminescent substrate or imaging your fluorescent probe...
  10. Hot Plasmids February 2024

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    Blog Post
    ...expression yielded editing of 80–90% in human cell lines and primary cells. Although cell entry of a Cas9...minimal toxicity, including in clinically-relevant lines such as CAR-T cells. Plus, this method is fast! ...break up the dimerization without losing that brightness and stability. Here’s a quick overview of these...variants:   Figure 2: Inner mitochondrial membranes imaged with structured illumination microscopy.... This variant has similar photostability and brightness compared to the original, though its maturation...versions. Thanks to Christophe Leterrier, whose FocalPlanes piece on mStayGold inspired and informed this...
  11. Adenoviral Delivery of CRISPR/Cas9 Aims to Expand Genome Editing to Primary Cells

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    ...Joining (NHEJ) DNA repair mechanism to knock out genes as a result of an insertion, a deletion or a frameshift...-transformed cells yielded rates of targeted mutagenesis similar to those achieved by isogenic AdVs encoding...Homology Directed Repair (HDR) to knock in corrective genes. For this you would need to provide a DNA template...successfully developed and used AdV vectors to edit genes in several biological systems. It has been used ...plasmids at Addgene: pAdSh.PGK.Cas9 (expresses S. pyogenes Cas9 from the PGK promoter) and U6 promoter-driven...CRISPR/Cas9 nuclease complexes induces targeted mutagenesis in a diverse array of human cells. Sci Rep 4:...
  12. Hot Plasmids: Winter 2025

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    ... constructs for tagging the kinesins KIF5A and KIF5B as well as backbones for generating other SNAPf-,...the conformational dynamics of the motor protein kinesin-1, the Twelvetrees Lab took advantage of the self-labeling... will be useful not only for future studies of kinesins but for many other proteins of interest too! Find....A.S., Craggs, T.D., & Twelvetrees A.E. (2024) Kinesin-1 is highly flexible and adopts an open conformation...mouse monoclonal antibodies targeting the human genes and are recommended for use in immunohistochemistry...
  13. Which Fluorescent Protein Should I Use?

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    Blog Post
    ... (24-30°C). BrightnessBrightness is a measure of how bright is the emission. Brightness is calculated...contributed by Gal Haimovich of greenfluorescentblog. Be honest. Do you really know how fluorescent proteins glow...the protein, divided by 1000. In many cases the brightness is compared to that of EGFP which is set as 1...proteins are very dim (e.g. TagRFP657, which has a brightness of 0.1) and this should be taken into account...
  14. Viral Vectors 101: The Retroviral Lifecycle

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    ...namely that they can cause cancer via insertional mutagenesis (which HIV does not do). Furthermore, molecular... are, in most cases, interested in transferring genes to mammalian cells (i.e. transferring DNA), yet ... is (thankfully) gutted of many essential viral genes. How it is, exactly, that heaps of viral vector ...the only component that is not dependent on viral genes. It is derived from the host/producer cell membrane...full “life cycle” of expression of selfish, lazy genes of a non-living viral particle, and how we as dedicated... N. (1971). Noninfectious ARK mouse embryo cell lines in which each cell has the capacity to be activated...
  15. A Career in Grants: How To Become a Grant Professional

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    ...changing guidelines and regulations impacting grant management, we track grant opportunity deadlines, and ...organization to evaluate the organization’s grant readiness, identify grant opportunities, secure grant awards...schools, healthcare facilities and with private businesses. How do you get the expertise needed to enter...such as research, collaboration across multiple disciplines, writing, project management, and program evaluation...process or the whole process, including grant readiness, funding opportunity research, application writing...
  16. Transferable Skills Guide: Career Planning Resources

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    ... the speaker and offer your business card (yes, you should have a business card; it’s a bit more informal...smaller talks within the bigger conference, especially ones that are more career-focused. After these talks,... will probably be willing to accept your CV or business card. Be warned, though – someone accepting your... formally apply for the position. This post on Business Insider nicely summarizes good job fair practice... Reading and Outside Resources http://www.businessinsider.com/how-to-get-the-most-out-of-job-fairs-2014...
  17. Plasmids 101: Codon usage bias

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    ...that recognize codons found in highly expressed genes (Emilsson and Kurland, 1990). Controlling gene expression...changing conditions - Organisms often need to express genes at different levels under different conditions. ...specific tRNA pools. For example, tRNAs used in genes encoding amino acid biosynthetic enzymes may be ... the problem of codon choice is to resynthesize genes in such a way that their codons are more appropriate...properly. You may be able to avoid getting your genes of interest codon optimized by ordering plasmids...use the same expression system for many different genes without having to create new constructs. However...
  18. Transferable Skills Guide: Creativity

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    ...job it is to disagree with the group. They are the ones who ask for rationales behind ideas and decisions...fill out the form at any time and a member of our Business Development team would review it. This survey ...frequently observe in a scientific setting.  Powerlessness It’s hard to be creative when you don’t believe...ideas obviously worth pursuing, evaluate the “bad” ones. Bad ideas are easier to work with than nothing ... mistakes that kill your productivity. Harvard Business Review. Retrieved January 14, 2022, from https...exercise to spur innovation on your team. Harvard Business Review. Retrieved January 14, 2022, from https...
  19. CRISPR 101: Any Base Transversion Editors

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    ... transition Base change between purines (A ↔ G) or between pyrimidines (C ↔ T).   Base transversion ... ABE would allow it to act on newly-deaminated inosines. Pro tip! The nucleoside inosine consists of the...this promising start, the team used rational mutagenesis to produce the adenine transversion editor AYBEv3...and ABEs, they could be useful for saturation mutagenesis, and they provide a strong proof of concept for...empty space. Over several rounds of rational mutagenesis, the team progressed to gGBEv6.3, which was capable...
  20. CRISPR 101: Which Cas9 Do I Choose for My CRISPR Experiment?

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    ...activators and repressors to target genes. Repressing target genes using dCas9-based repressors Early ...repression or knockdown allow you to study essential genes whose knockout would cause cell lethality. The Krüppel...purpose. dCas9-KRAB plasmids for repressing target genes in a variety of species and cell types can be found...found on Addgene’s website. Activating target genes using dCas9-based activators The simplest of the dCas9...transcriptional activator. Plasmids for activating target genes in a variety of species and cell types can be found...
Showing: 321 - 340 of 902 results