Addgene TALE10 Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: TALE10 Sequencing Result


Map View

800 600 400 200 End (802) EaeI (772) BclI * (756) HaeII (748) AfeI (746) EciI (718) StyI (715) BsiHKAI (603) EcoP15I (545) PstI (516) SfcI (512) SmlI XhoI PspXI PaeR7I (479) BaeGI - Bme1580I (469) HincII (386) BpmI - Eco57MI (320) NsiI (309) BmtI (279) NheI (275) EarI (267) BspEI - BsaWI (236) BsaBI * (212) XbaI (68) AatII (27) ZraI (25) BmrI (13) BseRI (8) Start (0) T2A VP64 SV40 NLS TALE10 802 bp

Sequence View

ZraIAatIIBmrIBseRIStart (0) 60 G V 155 150 145 140 PGPNEEVDGCTLLSGRGE T2A VPGPNEEVDGCTLLSGRGEG c t a c t g g g c c a g g a t t c t c c t c g a c g t c a c c g c a t g t t a g c a g a c t t c c t c t g c c c t c t c g a t g a c c c g g t c c t a a g a g g a g c t g c a g t g g c g t a c a a t c g t c t g a a g g a g a c g g g a g a g

XbaI 120 (in frame with VP64) SGRSNI 50 45 40 LMDLDFDDLADSGL VP64 SGRSNILMDLDFDDLADSGL c a c t g c c t c t a g a g t t a a t c a g c a t g t c c a g g t c g a a a t c a t c a a g g g c g t c a c t g c c g a g t g a c g g a g a t c t c a a t t a g t c g t a c a g g t c c a g c t t t a g t a g t t c c c g c a g t g a c g g c t

180 35 30 25 20 MDLDFDDLADSGLMDLDFDD VP64 MDLDFDDLADSGLMDLDFDD g c a t g t c g a g g t c a a a g t c a t c a a g g g c a t c c g a a c c a a g c a t g t c a a g g t c a a a a t c a t c g t a c a g c t c c a g t t t c a g t a g t t c c c g t a g g c t t g g t t c g t a c a g t t c c a g t t t t a g t a

BsaWIBspEIBsaBI* 240 ARGS 15 10 5 1 LADSGLMDLDFDDLAD VP64 LADSGLMDLDFDDLADARGS c g a g g g c g t c a c t t c c c a g c a t a t c c a g a t c a a a a t c g t c c a a t g c g t c a g c c c g t c c g g g c t c c c g c a g t g a a g g g t c g t a t a g g t c t a g t t t t a g c a g g t t a c g c a g t c g g g c a g g c c

BmtINheIEarI 300 GSAE 130 VKRKKKP SV40 NLS GSAEVKRKKKPSASARTQDG a a c c g c t g g c c t c c a c c t t t c t c t t c t t c t t g g g g c t a g c t g a c g c g c g a g t t t g g t c c c t t g g c g a c c g g a g g t g g a a a g a g a a g a a g a a c c c c g a t c g a c t g c g c g c t c a a a c c a g g g

Eco57MIBpmINsiI 360 EHMPSPADLDRELSDAFAHL c t t c a t g c a t g g g c g a g g g c g c g t c c a a a t c c c t c t c c a g c g a g t c t g c g a a c g c a t g a a g a a g t a c g t a c c c g c t c c c g c g c a g g t t t a g g g a g a g g t c g c t c a g a c g c t t g c g t a c t t

HincII 420 SAQDPTQTSTPSPKARKMGS g g c t c g c c t g g t c a g g t g t c t g a g t t g a c g t a g g t g a a g g c t t c g c g c g t t t c a t a c c g c c c g a g c g g a c c a g t c c a c a g a c t c a a c t g c a t c c a c t t c c g a a g c g c g c a a a g t a t g g c g

PaeR7IPspXIXhoISmlIBme1580IBaeGI 480 AQLIRDWRQSAPPLTGSRAE t c g c t t g g a g a a t c c t g t c c c a c c g c t g g g a g g c g g g a g g c a g t g t g c c c g a g c g g g c c t a g c g a a c c t c t t a g g a c a g g g t g g c g a c c c t c c g c c c t c c g t c a c a c g g g c t c g c c c g g a

PstISfcI 540 LETVGVRRFLQLLGHRSMGF c g a g t t c t g t g a c a c c g a c t c t a c g a a a g a g c t g c a g c a g t c c g t g t c t c g a c a t a c c a a g c t c a a g a c a c t g t g g c t g a g a t g c t t t c t c g a c g t c g t c a g g c a c a g a g c t g t a t g g t t

EcoP15I 600 QTMADDFAQAPHSHCQFFGL a t t g a g t c a t g g c g t c a t c g a a c g c t t g t g c g g g g t g g g a g t g a c a c t g g a a g a a t c c g a t a a c t c a g t a c c g c a g t a g c t t g c g a a c a c g c c c c a c c c t c a c t g t g a c c t t c t t a g g c t

BsiHKAI 660 VRVVQAHDAVRHSTREPIRR g c a c g c g g a c c a c t t g c g c g t g a t c t g c c a c t c g a t g t g a t g t c c t c t c g g g a a t c c t t c c g t g c g c c t g g t g a a c g c g c a c t a g a c g g t g a g c t a c a c t a c a g g a g a g c c c t t a g g a a g

StyIEciI 720 NTRKILAPAHPLGKKVADLA t g t t g g t c c g c t t a a t c a a t g c a g g c g c g t g c g g g a g c c c c t t c t t c a c c g c a t c c a a g g a c a a c c a g g c g a a t t a g t t a c g t c c g c g c a c g c c c t c g g g g a a g a a g t g g c g t a g g t t c c

EaeIBclI*AfeIHaeII 780 PRGGLCALAVLHDNTLAALA c g g g t c g t c c g c c g a g g c a g g c c a g c g c t a c a a g a t g a t c a t t a g t g a g t g c g g c c a g c g g c c c a g c a g g c g g c t c c g t c c g g t c g c g a t g t t c t a c t a g t a a t c a c t c a c g c c g g t c g c

End (802) 802 PDPSSLQ c g g g g t c c g g g c t c g a a a g c t g g c c c c a g g c c c g a g c t t t c g a c

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.