Addgene pL0_CD-eYGFP-uv Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: pL0_CD-eYGFP-uv Sequencing Result


Map View

NaeI (2693) NgoMIV (2691) BssHII (2616) BsaAI (2587) AlwNI (2228) pBR322ori-F (1953 .. 1972) AflIII - PciI (1812) AfeI (1713) AleI (1646) EcoO109I - PpuMI (1627) DraI (1593) BglI (2715) PvuI (249) BpmI (378) BstEII (463) BtsI - BtsαI (513) EaeI (537) BanI - KasI (743) NarI (744) SfoI (745) PluTI (747) PvuII (752) HindIII (776) SphI (786) SalI (794) AccI (795) HincII (796) XbaI (800) BsrBI (809) BstAPI (939) PflFI - Tth111I (970) PfoI (974) Eco53kI (1020) SacI (1022) NmeAIII (1040) EarI (1148) BbsI (1186) EcoRI (1349) pL0_CD-eYGFP-uv 2716 bp

Sequence View

60 205 200 195 190 AAVDKPAIKGTVASYWIRSL SmR AAVDKPAIKGTVASYWIRSL g g c a g c g a c a t c c t t c g g c g c g a t t t t g c c g g t t a c t g c g c t g t a c c a a a t g c g g g a c a a c c g t c g c t g t a g g a a g c c g c g c t a a a a c g g c c a a t g a c g c g a c a t g g t t t a c g c c c t g t t

120 185 180 175 170 TLVVNREDGAWDPPSNWLTL SmR TLVVNREDGAWDPPSNWLTL c g t a a g c a c t a c a t t t c g c t c a t c g c c a g c c c a g t c g g g c g g c g a g t t c c a t a g c g t t a a g c a t t c g t g a t g t a a a g c g a g t a g c g g t c g g g t c a g c c c g c c g c t c a a g g t a t c g c a a t t

180 165 160 155 150 TENLAEFLDQEPVPDFLEEA SmR TENLAEFLDQEPVPDFLEEA g g t t t c a t t t a g c g c c t c a a a t a g a t c c t g t t c a g g a a c c g g a t c a a a g a g t t c c t c c g c c c a a a g t a a a t c g c g g a g t t t a t c t a g g a c a a g t c c t t g g c c t a g t t t c t c a a g g a g g c g

240 145 140 135 130 APGVLAVSHERAKTLLIALD SmR APGVLAVSHERAKTLLIALD c g c t g g a c c t a c c a a g g c a a c g c t a t g t t c t c t t g c t t t t g t c a g c a a g a t a g c c a g a t c g c g a c c t g g a t g g t t c c g t t g c g a t a c a a g a g a a c g a a a a c a g t c g t t c t a t c g g t c t a g

PvuI 300 125 120 115 110 IDITAPEFIGALIDNRQWEG SmR IDITAPEFIGALIDNRQWEG a a t g t c g a t c g t g g c t g g c t c g a a g a t a c c a g c a a g a a t g t c a t t g c g c t g c c a t t c t c c t t a c a g c t a g c a c c g a c c g a g c t t c t a t g g t c g t t c t t a c a g t a a c g c g a c g g t a a g a g g

360 105 100 95 90 FQLERKAPYRWPIIDDHVVI SmR FQLERKAPYRWPIIDDHVVI a a a t t g c a g t t c g c g c t t a g c t g g a t a a c g c c a c g g a a t g a t g t c g t c g t g c a c a a c a a t t t t a a c g t c a a g c g c g a a t c g a c c t a t t g c g g t g c c t t a c t a c a g c a g c a c g t g t t g t t a

BpmI 420 85 80 75 70 TVEVARLIESEGPSASTELL SmR TVEVARLIESEGPSASTELL g g t g a c t t c t a c a g c g c g g a g a a t c t c a c t c t c t c c a g g g g a a g c c g a a g t t t c c a a a a g c c a c t g a a g a t g t c g c g c c t c t t a g a g t g a g a g a g g t c c c c t t c g g c t t c a a a g g t t t t c

BstEII 480 65 60 55 50 DNILARRTTEDLRVTVTVLL SmR DNILARRTTEDLRVTVTVLL g t c g t t g a t c a a a g c t c g c c g c g t t g t t t c a t c a a g c c t t a c g g t c a c c g t a a c c a g c a a c a g c a a c t a g t t t c g a g c g g c g c a a c a a a g t a g t t c g g a a t g c c a g t g g c a t t g g t c g t t

EaeIBtsαIBtsI 540 45 40 35 30 DIDSHPKLGGDVASGYLHVA SmR DIDSHPKLGGDVASGYLHVA a t c a a t a t c a c t g t g t g g c t t c a g g c c g c c a t c c a c t g c g g a g c c g t a c a a a t g t a c g g c t a g t t a t a g t g a c a c a c c g a a g t c c g g c g g t a g g t g a c g c c t c g g c a t g t t t a c a t g c c g

600 25 20 15 10 LLTPELHREIVGVVESLQTS SmR LLTPELHREIVGVVESLQTS c a g c a a c g t c g g t t c g a g a t g g c g c t c g a t g a c g c c a a c t a c c t c t g a t a g t t g a g t c g a g t c g t t g c a g c c a a g c t c t a c c g c g a g c t a c t g c g g t t g a t g g a g a c t a t c a a c t c a g c t

660 5 1 VEAIVAERM SmR VEAIVAERM t a c t t c g g c g a t c a c c g c t t c c c t c a t g c g a a a c g a t c c t c a t c c t g t c t c t t g a t c a g a a t g a a g c c g c t a g t g g c g a a g g g a g t a c g c t t t g c t a g g a g t a g g a c a g a g a a c t a g t c t

720 t a t t g a t c c c c t g c g c c a t c a g a t c c t t g g c g g c a a g a a a g c c a t c c a g t t t a c t t t g c a a t a a c t a g g g g a c g c g g t a g t c t a g g a a c c g c c g t t c t t t c g g t a g g t c a a a t g a a a c g t

HindIIIPvuIIBanIKasINarISfoIPluTI 780 g g g c t t c c c a a c c t t a c c a g a g g g c g c c c c a g c t g g c a a t t c c g g t t c g c t t g c t a a g c t c c c g a a g g g t t g g a a t g g t c t c c c g c g g g g t c g a c c g t t a a g g c c a a g c g a a c g a t t c g a

BsrBISalIAccIHincIIXbaISphI 840 t g c a t g c c t g c a a g t c g a c t c t a g a g g a g c g g t g a t c a c a g g c a g c a a c g c t c t g t c a t c a c g t a c g g a c g t t c a g c t g a g a t c t c c t c g c c a c t a g t g t c c g t c g t t g c g a g a c a g t a g

900 g t t a c a a t c a a c a t g c t a c c c t c c g c g a g a t c a t c c g t g t t t c a a a c c c g g c a g c t t a g t c a a t g t t a g t t g t a c g a t g g g a g g c g c t c t a g t a g g c a c a a a g t t t g g g c c g t c g a a t c a

BstAPI 960 t g c c g t t c t t c c g a a t a g c a t c g g t a a c a t g a g c a a a g t c t g c c g c c t t a c a a c g g c t c t a c g g c a a g a a g g c t t a t c g t a g c c a t t g t a c t c g t t t c a g a c g g c g g a a t g t t g c c g a g a

Eco53kITth111IPflFIPfoI 1020 c c c g c t g a c g c c g t c c c g g a c t g a t g g g c t g c c t g t a t c g a g t g g t g a t t t t g t g c c g a g g g g c g a c t g c g g c a g g g c c t g a c t a c c c g a c g g a c a t a g c t c a c c a c t a a a a c a c g g c t c

NmeAIIISacI 1080 MTT c t c a t t a c t c g c a t c c a t t c t c a g g c t g t c t c g t c t c g t c t c a g g t c t c a a a t g a c a a c a g a g t a a t g a g c g t a g g t a a g a g t c c g a c a g a g c a g a g c a g a g t c c a g a g t t t a c t g t t g t

1140 FKIESRIHGNLNGEKFELVG t t c a a g a t t g a g t c c c g c a t c c a c g g a a a c c t t a a c g g c g a a a a a t t t g a a t t g g t c g g c a a g t t c t a a c t c a g g g c g t a g g t g c c t t t g g a a t t g c c g c t t t t t a a a c t t a a c c a g c c g

BbsIEarI 1200 GGVGEEGRLEIEMKTKDKPL g g g g g c g t t g g t g a a g a g g g t c g c t t a g a a a t t g a g a t g a a g a c g a a a g a c a a g c c a t t a c c c c c g c a a c c a c t t c t c c c a g c g a a t c t t t a a c t c t a c t t c t g c t t t c t g t t c g g t a a t

1260 AFSPFLLTTCMGYGFYHFAS g c a t t c t c a c c a t t c t t a t t a a c t a c t t g c a t g g g g t a c g g a t t t t a c c a t t t c g c c t c a c g t a a g a g t g g t a a g a a t a a t t g a t g a a c g t a c c c c a t g c c t a a a a t g g t a a a g c g g a g t

1320 FPKGIKNIYLHAATNGGYTN t t c c c a a a a g g t a t c a a g a a c a t t t a t c t t c a t g c c g c t a c g a a t g g c g g a t a c a c g a a c a a g g g t t t t c c a t a g t t c t t g t a a a t a g a a g t a c g g c g a t g c t t a c c g c c t a t g t g c t t g

EcoRI 1380 TRKEIYEDGGILEVNFRYTY a c c c g t a a g g a a a t t t a c g a a g a t g g a g g a a t t c t t g a a g t t a a t t t t c g c t a c a c a t a t t g g g c a t t c c t t t a a a t g c t t c t a c c t c c t t a a g a a c t t c a a t t a a a a g c g a t g t g t a t a

1440 EFNKIIGDVECIGHGFPSQS g a g t t c a a t a a g a t c a t c g g g g a t g t g g a a t g c a t c g g a c a t g g t t t t c c a a g c c a g t c g c t c a a g t t a t t c t a g t a g c c c c t a c a c c t t a c g t a g c c t g t a c c a a a a g g t t c g g t c a g c

1500 PIFKDTIVKSCPTVDLMLPM c c a a t t t t c a a a g a c a c g a t t g t c a a g a g t t g t c c a a c c g t t g a t c t g a t g c t g c c t a t g g g t t a a a a g t t t c t g t g c t a a c a g t t c t c a a c a g g t t g g c a a c t a g a c t a c g a c g g a t a c

1560 SGNIIASSYAYAFQLKDGSF a g t g g c a a c a t c a t c g c a t c g t c t t a t g c a t a t g c c t t c c a g t t a a a a g a t g g t a g c t t t t c a c c g t t g t a g t a g c g t a g c a g a a t a c g t a t a c g g a a g g t c a a t t t t c t a c c a t c g a a a

DraI 1620 YTAEVKNNIDFKNPIHESFS t a t a c c g c a g a a g t c a a g a a c a a c a t t g a t t t t a a a a a t c c a a t c c a c g a a t c g t t c a g c a t a t g g c g t c t t c a g t t c t t g t t g t a a c t a a a a t t t t t a g g t t a g g t g c t t a g c a a g t c g

AleIEcoO109IPpuMI 1680 KSGPMFTHRRVEETLTKENL a a a t c a g g a c c t a t g t t t a c a c a c c g c c g t g t a g a g g a a a c a t t a a c g a a g g a g a a t c t g t t t a g t c c t g g a t a c a a a t g t g t g g c g g c a c a t c t c c t t t g t a a t t g c t t c c t c t t a g a c

AfeI 1740 AIVEYQQVFNSAPRDMSGRD g c g a t t g t c g a g t a t c a g c a a g t g t t c a a t a g c g c t c c t c g t g a t a t g t c a g g t c g a g a c c g c t a a c a g c t c a t a g t c g t t c a c a a g t t a t c g c g a g g a g c a c t a t a c a g t c c a g c t c t g

1800 HQDT* c a c c a g g a t a c a t a g a t t a c c a c a a c t c c g a g c c c t t c c a c c c a c a g a a t c a g g g g a t a a g t g g t c c t a t g t a t c t a a t g g t g t t g a g g c t c g g g a a g g t g g g t g t c t t a g t c c c c t a t t

AflIIIPciI 1860 c g c a g g a a a g a a c a t g t g a g c a a a a g g c c a g c a a a a g g c c a g g a a c c g t a a a a a g g c c g c g c g t c c t t t c t t g t a c a c t c g t t t t c c g g t c g t t t t c c g g t c c t t g g c a t t t t t c c g g c g

1920 ori g t t g c t g g c g t t t t t c c a t a g g c t c c g c c c c c c t g a c g a g c a t c a c a a a a a t c g a c g c t c c a a c g a c c g c a a a a a g g t a t c c g a g g c g g g g g g a c t g c t c g t a g t g t t t t t a g c t g c g a g

1980 ori T T T C T A T G G T C C G C A A A G G G pBR322ori-F a a g t c a g a g g t g g c g a a a c c c g a c a g g a c t a t a a a g a t a c c a g g c g t t t c c c c c t g g a a g t t c a g t c t c c a c c g c t t t g g g c t g t c c t g a t a t t t c t a t g g t c c g c a a a g g g g g a c c t t c

2040 ori c t c c c t c g t g c g c t c t c c t g t t c c g a c c c t g c c g c t t a c c g g a t a c c t g t c c g c c t t t c t g a g g g a g c a c g c g a g a g g a c a a g g c t g g g a c g g c g a a t g g c c t a t g g a c a g g c g g a a a g a

2100 ori c c c t t c g g g a a g c g t g g c g c t t t c t c a t a g c t c a c g c t g t a g g t a t c t c a g t t c g g t g t a g g g a a g c c c t t c g c a c c g c g a a a g a g t a t c g a g t g c g a c a t c c a t a g a g t c a a g c c a c a t

2160 ori g g t c g t t c g c t c c a a g c t g g g c t g t g t g c a c g a a c c c c c c g t t c a g c c c g a c c g c t g c g c c c a g c a a g c g a g g t t c g a c c c g a c a c a c g t g c t t g g g g g g c a a g t c g g g c t g g c g a c g c g

2220 ori c t t a t c c g g t a a c t a t c g t c t t g a g t c c a a c c c g g t a a g a c a c g a c t t a t c g c c a c t g g c g a a t a g g c c a t t g a t a g c a g a a c t c a g g t t g g g c c a t t c t g t g c t g a a t a g c g g t g a c c g

AlwNI 2280 ori a g c a g c c a c t g g t a a c a g g a t t a g c a g a g c g a g g t a t g t a g g c g g t g c t a c a g a g t t c t t t c g t c g g t g a c c a t t g t c c t a a t c g t c t c g c t c c a t a c a t c c g c c a c g a t g t c t c a a g a a

2340 ori g a a g t g g t g g c c t a a c t a c g g c t a c a c t a g a a g a a c a g t a t t t g g t a t c t g c g c t c t g c t c t t c a c c a c c g g a t t g a t g c c g a t g t g a t c t t c t t g t c a t a a a c c a t a g a c g c g a g a c g a

2400 ori g a a g c c a g t t a c c t t c g g a a a a a g a g t t g g t a g c t c t t g a t c c g g c a a a c a a a c c a c c g c c t t c g g t c a a t g g a a g c c t t t t t c t c a a c c a t c g a g a a c t a g g c c g t t t g t t t g g t g g c g

2460 ori t g g t a g c g g t g g t t t t t t t g t t t g c a a g c a g c a g a t t a c g c g c a g a a a a a a a g g a t c t c a a c c a t c g c c a c c a a a a a a a c a a a c g t t c g t c g t c t a a t g c g c g t c t t t t t t t c c t a g a g t

2520 ori a g a a g a t c c t t t g a t c t t t t c t a c g g g g t c t g a c g c t c a g t g g a a c g a a a a c t c a c g t t a t c t t c t a g g a a a c t a g a a a a g a t g c c c c a g a c t g c g a g t c a c c t t g c t t t t g a g t g c a a t

2580 260 255 *KGVVKTIEG SmR *KGVVKTIEG a g g g a t t t t g g t c a t g c a t t c t a g g t g a t t a t t a t t t g c c g a c t a c c t t g g t g a t c t c g c t c c c t a a a a c c a g t a c g t a a g a t c c a c t a a t a a t a a a c g g c t g a t g g a a c c a c t a g a g c g

BssHIIBsaAI 2640 250 245 240 235 KVYHVFEELQDARSALRDEE SmR KVYHVFEELQDARSALRDEE c t t t c a c g t a g t g g a c a a a t t c t t c c a a c t g a t c t g c g c g c g a g g c c a a g c g a t c t t c t t g a a a g t g c a t c a c c t g t t t a a g a a g g t t g a c t a g a c g c g c g c t c c g g t t c g c t a g a a g a a

NgoMIVNaeI 2700 230 225 220 215 QGLYAQRAELIVPQYQAPLR SmR QGLYAQRAELIVPQYQAPLR c t t g t c c a a g a t a a g c c t g t c t a g c t t c a a g t a t g a c g g g c t g a t a c t g g g c c g g c a g g c g a a c a g g t t c t a t t c g g a c a g a t c g a a g t t c a t a c t g c c c g a c t a t g a c c c g g c c g t c c g

BglI 2716 210 EMAWD SmR EMAWD g c t c c a t t g c c c a g t c c g a g g t a a c g g g t c a g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.