Addgene pL0_AB-P49 Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: pL0_AB-P49 Sequencing Result


Map View

NaeI (3540) NgoMIV (3538) BssHII (3463) NsiI (3385) BsmI (3383) AlwNI (3075) pBR322ori-F (2800 .. 2819) DrdI (2767) PciI (2659) MluI (2479) SacII (2435) BstBI (2392) MfeI (2287) BsrGI - TatI (2225) PspXI (2204) PflMI (1897) KpnI (1759) BglI (3562) BtgZI (63) BstEII (460) BtsI - BtsαI (510) EaeI (534) KasI (740) NarI (741) SfoI (742) PluTI (744) PvuII (749) HindIII (773) SphI (783) SalI (791) AccI (792) XbaI (797) BsrBI (806) BseRI (816) BstAPI (936) PfoI (971) BspEI (1065) HpaI (1375) PmlI (1419) AleI (1421) BglII (1516) BbsI (1571) BspHI (1728) Acc65I (1755) pL0_AB-P49 3566 bp

Sequence View

60 205 200 195 190 AVDKPAIKGTVASYWIRSLT SmR AVDKPAIKGTVASYWIRSLT a g c g a c a t c c t t c g g c g c g a t t t t g c c g g t t a c t g c g c t g t a c c a a a t g c g g g a c a a c g t t c g c t g t a g g a a g c c g c g c t a a a a c g g c c a a t g a c g c g a c a t g g t t t a c g c c c t g t t g c a

BtgZI 120 185 180 175 170 LVVNREDGAWDPPSNWLTLT SmR LVVNREDGAWDPPSNWLTLT a a g c a c t a c a t t t c g c t c a t c g c c a g c c c a g t c g g g c g g c g a g t t c c a t a g c g t t a a g g t t t c g t g a t g t a a a g c g a g t a g c g g t c g g g t c a g c c c g c c g c t c a a g g t a t c g c a a t t c c a

180 165 160 155 150 ENLAEFLDQEPVPDFLEEAA SmR ENLAEFLDQEPVPDFLEEAA t t c a t t t a g c g c c t c a a a t a g a t c c t g t t c a g g a a c c g g a t c a a a g a g t t c c t c c g c c g c a a g t a a a t c g c g g a g t t t a t c t a g g a c a a g t c c t t g g c c t a g t t t c t c a a g g a g g c g g c g

240 145 140 135 130 PGVLAVSHERAKTLLIALDI SmR PGVLAVSHERAKTLLIALDI t g g a c c t a c c a a g g c a a c g c t a t g t t c t c t t g c t t t t g t c a g c a a g a t a g c c a g a t c a a t a c c t g g a t g g t t c c g t t g c g a t a c a a g a g a a c g a a a a c a g t c g t t c t a t c g g t c t a g t t a

300 125 120 115 110 DITAPEFIGALIDNRQWEGF SmR DITAPEFIGALIDNRQWEGF g t c g a t c g t g g c t g g c t c g a a g a t a c c a g c a a g a a t g t c a t t g c g c t g c c a t t c t c c a a a c a g c t a g c a c c g a c c g a g c t t c t a t g g t c g t t c t t a c a g t a a c g c g a c g g t a a g a g g t t t

360 105 100 95 90 QLERKAPYRWPIIDDHVVIT SmR QLERKAPYRWPIIDDHVVIT t t g c a g t t c g c g c t t a g c t g g a t a a c g c c a c g g a a t g a t g t c g t c g t g c a c a a c a a t g g t a a c g t c a a g c g c g a a t c g a c c t a t t g c g g t g c c t t a c t a c a g c a g c a c g t g t t g t t a c c a

420 85 80 75 70 VEVARLIESEGPSASTELLD SmR VEVARLIESEGPSASTELLD g a c t t c t a c a g c g c g g a g a a t c t c a c t c t c t c c a g g g g a a g c c g a a g t t t c c a a a a g g t c c t g a a g a t g t c g c g c c t c t t a g a g t g a g a g a g g t c c c c t t c g g c t t c a a a g g t t t t c c a g

BstEII 480 65 60 55 50 NILARRTTEDLRVTVTVLLD SmR NILARRTTEDLRVTVTVLLD g t t g a t c a a a g c t c g c c g c g t t g t t t c a t c a a g c c t t a c g g t c a c c g t a a c c a g c a a a t c c a a c t a g t t t c g a g c g g c g c a a c a a a g t a g t t c g g a a t g c c a g t g g c a t t g g t c g t t t a g

EaeIBtsαIBtsI 540 45 40 35 30 IDSHPKLGGDVASGYLHVAL SmR IDSHPKLGGDVASGYLHVAL a a t a t c a c t g t g t g g c t t c a g g c c g c c a t c c a c t g c g g a g c c g t a c a a a t g t a c g g c c a g t t a t a g t g a c a c a c c g a a g t c c g g c g g t a g g t g a c g c c t c g g c a t g t t t a c a t g c c g g t c

600 25 20 15 10 LTPELHREIVGVVESLQTSV SmR LTPELHREIVGVVESLQTSV c a a c g t c g g t t c g a g a t g g c g c t c g a t g a c g c c a a c t a c c t c t g a t a g t t g a g t c g a t a c g t t g c a g c c a a g c t c t a c c g c g a g c t a c t g c g g t t g a t g g a g a c t a t c a a c t c a g c t a t g

660 5 1 EAIVAERM SmR EAIVAERM t t c g g c g a t c a c c g c t t c c c t c a t g c g a a a c g a t c c t c a t c c t g t c t c t t g a t c a g a t a t a a g c c g c t a g t g g c g a a g g g a g t a c g c t t t g c t a g g a g t a g g a c a g a g a a c t a g t c t a t a

720 t g a t c c c c t g c g c c a t c a g a t c c t t g g c g g c a a g a a a g c c a t c c a g t t t a c t t t g c a g g g a c t a g g g g a c g c g g t a g t c t a g g a a c c g c c g t t c t t t c g g t a g g t c a a a t g a a a c g t c c c

HindIIIPvuIIKasINarISfoIPluTI 780 c t t c c c a a c c t t a c c a g a g g g c g c c c c a g c t g g c a a t t c c g g t t c g c t t g c t a a g c t t g c g a a g g g t t g g a a t g g t c t c c c g c g g g g t c g a c c g t t a a g g c c a a g c g a a c g a t t c g a a c g

BseRIBsrBIXbaISalIAccISphI 840 a t g c c t g c a a g t c g a c t c t a g a g g a g c g g t g a t c a c a g g c a g c a a c g c t c t g t c a t c g t t t a c g g a c g t t c a g c t g a g a t c t c c t c g c c a c t a g t g t c c g t c g t t g c g a g a c a g t a g c a a

900 a c a a t c a a c a t g c t a c c c t c c g c g a g a t c a t c c g t g t t t c a a a c c c g g c a g c t t a g t t g c t g t t a g t t g t a c g a t g g g a g g c g c t c t a g t a g g c a c a a a g t t t g g g c c g t c g a a t c a a c g

BstAPI 960 c g t t c t t c c g a a t a g c a t c g g t a a c a t g a g c a a a g t c t g c c g c c t t a c a a c g g c t c t c c c g c a a g a a g g c t t a t c g t a g c c a t t g t a c t c g t t t c a g a c g g c g g a a t g t t g c c g a g a g g g

PfoI 1020 g c t g a c g c c g t c c c g g a c t g a t g g g c t g c c t g t a t c g a g t g g t g a t t t t g t g c c g a g c t c c g a c t g c g g c a g g g c c t g a c t a c c c g a c g g a c a t a g c t c a c c a c t a a a a c a c g g c t c g a g

BspEI 1080 a t t a c t c g c a t c c a t t c t c a g g c t g t c t c g t c t c g t c t c a g g t c t c c g g a g t c c a a a c g g t a a t g a g c g t a g g t a a g a g t c c g a c a g a g c a g a g c a g a g t c c a g a g g c c t c a g g t t t g c c

1140 t a c g t c a g a t c c c a c g t c a c t a c c g c a c c c g g t t a t t c c a g t g c g t a a g c t c g t a g t g g a a t g c a g t c t a g g g t g c a g t g a t g g c g t g g g c c a a t a a g g t c a c g c a t t c g a g c a t c a c c t

1200 a g a a c a g g c t g c g g t a g t g a c g t g g a a t t t g a c a c t t t c c a a t c t t c a a g a c c t c t a g c c t c t t g t c c g a c g c c a t c a c t g c a c c t t a a a c t g t g a a a g g t t a g a a g t t c t g g a g a t c g g

1260 a g c a a a g a c t t c t t g a a t c t g c a a g g a t a t t c t a t t t a g a t a t a a g t a t a t a c t t g a c a g t c g t t t c t g a a g a a c t t a g a c g t t c c t a t a a g a t a a a t c t a t a t t c a t a t a t g a a c t g t c

1320 t g a g g g g g g t c g t g a c c g t c t c t c g c t g g g a t a g a g a a g a t g g c a a c c a t t g a a t t g a g a a c t c c c c c c a g c a c t g g c a g a g a g c g a c c c t a t c t c t t c t a c c g t t g g t a a c t t a a c t c t

HpaI 1380 a c t c g a a a c t t g a g c t t g g t t g g a t c t t g a t c a t t c t g a a t t t g c a g g a t a g g t t a a c a g t g a g c t t t g a a c t c g a a c c a a c c t a g a a c t a g t a a g a c t t a a a c g t c c t a t c c a a t t g t c

PmlIAleI 1440 t a a a a g t c a a t c t t g c g c t c g c c a t c t a c c a g a a a g c a c g t g g g t g c c c a g a t c c t c c c a a t t t t c a g t t a g a a c g c g a g c g g t a g a t g g t c t t t c g t g c a c c c a c g g g t c t a g g a g g g t

1500 a c g a g c g a a c g g a c g g a t g c t a g t c g g g g g g a t c t c t g t g g g c c a t t c a a a c g a a a g g c a t g c t c g c t t g c c t g c c t a c g a t c a g c c c c c c t a g a g a c a c c c g g t a a g t t t g c t t t c c g t

BglII 1560 g a t g g c a t c g t t c c a a g a t c t a t t g g t c a t t g g g c t t c t c a t a c a g t c a t t g a c a c c a c g c t a c c g t a g c a a g g t t c t a g a t a a c c a g t a a c c c g a a g a g t a t g t c a g t a a c t g t g g t g c

BbsI 1620 a t t g a a g a c a a a t t t t t g t t g a c a g t g a a a t c g t t g c g g a c g c g c t c c g a t t c a a a a g t t t a a c t t c t g t t t a a a a a c a a c t g t c a c t t t a g c a a c g c c t g c g c g a g g c t a a g t t t t c a a

1680 t c c c t a c t c g g t c g c g t c a a c c g a c c t t c c c c t c g t g a g t t t a c a g c t t g a t a c g c c c t a a g g g a t g a g c c a g c g c a g t t g g c t g g a a g g g g a g c a c t c a a a t g t c g a a c t a t g c g g g a t

BspHI 1740 t t t g g c t t c c t a t g t a a a g t c t c c a g t g a t c a t a t t a a a g t c a t t g g t c a t g a c a c t c t c a a a c c g a a g g a t a c a t t t c a g a g g t c a c t a g t a t a a t t t c a g t a a c c a g t a c t g t g a g a g

Acc65IKpnI 1800 c t t g t t c a a a a t t t g g t a c c a t a c a a t g c g c g g a g c a g t c a g t t c t c a t t t c c a g c g a t c g a a c a a g t t t t a a a c c a t g g t a t g t t a c g c g c c t c g t c a g t c a a g a g t a a a g g t c g c t a g

1860 g t t a a a a c a a t t a g a g a a a t g c c t t a c t t c t c t c t t t a t a t c t g t a t t a c t c a g a g t c a g c a a t t t t g t t a a t c t c t t t a c g g a a t g a a g a g a g a a a t a t a g a c a t a a t g a g t c t c a g t c

PflMI 1920 t g a g t a g t a c g a a t t t c c a a c g t c c t a g c t c c a a t t t a t g g t t t c a a a c a a t c c g a a t t c a c t c a t c a t g c t t a a a g g t t g c a g g a t c g a g g t t a a a t a c c a a a g t t t g t t a g g c t t a a g

1980 g t t g g t c c a c a g t c a a g g a a t t c g c a a g a a t c c c t a t t t c a c t a g g c g t g c a c t a t g g g g c a a c c a g g t g t c a g t t c c t t a a g c g t t c t t a g g g a t a a a g t g a t c c g c a c g t g a t a c c c c

2040 t c g c t t t t g a g g t t c t c a t t t g c g g c g a t c g t t a a a a c g a t t a c a g a a a t g c t a c a c t t c a g c g a a a a c t c c a a g a g t a a a c g c c g c t a g c a a t t t t g c t a a t g t c t t t a c g a t g t g a a g

2100 g c t c t t t a t a t a t a t t a c t c a t t g a g c a t c a g g a a t g t c c a a t g t c g t a a c t c c g a t t c a c g a g a a a t a t a t a t a a t g a g t a a c t c g t a g t c c t t a c a g g t t a c a g c a t t g a g g c t a a g t

2160 t g g t t t c a a a c a a t c c g a a t t c g t t g g t c c g a g g a a t c c g c a a a a a g t a a t t g t a g t c t a a c c a a a g t t t g t t a g g c t t a a g c a a c c a g g c t c c t t a g g c g t t t t t c a t t a a c a t c a g a t

PspXI 2220 t g t a c g a c c g a g t c g c t g g t g a g g g t t t t t t g t c g t t g g a t t g c t c g a g c g a a t t c t c c g a c a t g c t g g c t c a g c g a c c a c t c c c a a a a a a c a g c a a c c t a a c g a g c t c g c t t a a g a g g c

BsrGITatI 2280 a g a t t g t a c a g a a a g c t c a a c t t t c g g a a g g c a t c t a t g t g g t c c a a c c a a t c t a t t c a a t c t a a c a t g t c t t t c g a g t t g a a a g c c t t c c g t a g a t a c a c c a g g t t g g t t a g a t a a g t t

MfeI 2340 a t a t a t c a a t t g t t a a g a g c a g a g t t c g a t c c t c a c t a t g t g g a g g g g c a t g g t g a g a t t t a t a t a g t t a a c a a t t c t c g t c t c a a g c t a g g a g t g a t a c a c c t c c c c g t a c c a c t c t a a

BstBI 2400 a c g g a g t g c c g a g a c a t a a g a g c t c c c t g c a a t c a a g t t g a t g g a c a t g c t t c g a a a a t g t g c c t c a c g g c t c t g t a t t c t c g a g g g a c g t t a g t t c a a c t a c c t g t a c g a a g c t t t t a c

SacII 2460 c c a t g a c t g a g a a c g a g a a c g c c c a g a t g c t c c g c g g c a c g a g a a c t c g a t g a a c a c g a a g g t a c t g a c t c t t g c t c t t g c g g g t c t a c g a g g c g c c g t g c t c t t g a g c t a c t t g t g c t t

MluI 2520 c c g a a t c c a a c g c c a a a a a c g c g t t g t c c a a a a c a t t g c a a c t c t c t c t g a t a a a a a c c a g g c t t a g g t t g c g g t t t t t g c g c a a c a g g t t t t g t a a c g t t g a g a g a g a c t a t t t t t g g t

2580 a a a c g c c g c a a a t t g c a c c a g c t t t t t t g g t t g t c c t a c g c c t c t t t c c g c a c c a c c t a c t t t g c g g c g t t t a a c g t g g t c g a a a a a a c c a a c a g g a t g c g g a g a a a g g c g t g g t g g a t g

2640 t c g a g a c c a c c a g g a t a c a t a g a t t a c c a c a a c t c c g a g c c c t t c c a c c c a c a g a a t c a g a g c t c t g g t g g t c c t a t g t a t c t a a t g g t g t t g a g g c t c g g g a a g g t g g g t g t c t t a g t c

PciI 2700 g g g a t a a c g c a g g a a a g a a c a t g t g a g c a a a a g g c c a g c a a a a g g c c a g g a a c c g t a a a a c c c t a t t g c g t c c t t t c t t g t a c a c t c g t t t t c c g g t c g t t t t c c g g t c c t t g g c a t t t t

2760 ori a g g c c g c g t t g c t g g c g t t t t t c c a t a g g c t c c g c c c c c c t g a c g a g c a t c a c a a a a a t c t c c g g c g c a a c g a c c g c a a a a a g g t a t c c g a g g c g g g g g g a c t g c t c g t a g t g t t t t t a g

DrdI 2820 ori T T T C T A T G G T C C G C A A A G G G pBR322ori-F g a c g c t c a a g t c a g a g g t g g c g a a a c c c g a c a g g a c t a t a a a g a t a c c a g g c g t t t c c c c c t g c g a g t t c a g t c t c c a c c g c t t t g g g c t g t c c t g a t a t t t c t a t g g t c c g c a a a g g g g

2880 ori c t g g a a g c t c c c t c g t g c g c t c t c c t g t t c c g a c c c t g c c g c t t a c c g g a t a c c t g t c c g g a c c t t c g a g g g a g c a c g c g a g a g g a c a a g g c t g g g a c g g c g a a t g g c c t a t g g a c a g g c

2940 ori c c t t t c t c c c t t c g g g a a g c g t g g c g c t t t c t c a t a g c t c a c g c t g t a g g t a t c t c a g t t g g a a a g a g g g a a g c c c t t c g c a c c g c g a a a g a g t a t c g a g t g c g a c a t c c a t a g a g t c a a

3000 ori c g g t g t a g g t c g t t c g c t c c a a g c t g g g c t g t g t g c a c g a a c c c c c c g t t c a g c c c g a c c g c c a c a t c c a g c a a g c g a g g t t c g a c c c g a c a c a c g t g c t t g g g g g g c a a g t c g g g c t g g

3060 ori g c t g c g c c t t a t c c g g t a a c t a t c g t c t t g a g t c c a a c c c g g t a a g a c a c g a c t t a t c g c c g a c g c g g a a t a g g c c a t t g a t a g c a g a a c t c a g g t t g g g c c a t t c t g t g c t g a a t a g c g

AlwNI 3120 ori c a c t g g c a g c a g c c a c t g g t a a c a g g a t t a g c a g a g c g a g g t a t g t a g g c g g t g c t a c a g g t g a c c g t c g t c g g t g a c c a t t g t c c t a a t c g t c t c g c t c c a t a c a t c c g c c a c g a t g t c

3180 ori a g t t c t t g a a g t g g t g g c c t a a c t a c g g c t a c a c t a g a a g a a c a g t a t t t g g t a t c t g c g t c a a g a a c t t c a c c a c c g g a t t g a t g c c g a t g t g a t c t t c t t g t c a t a a a c c a t a g a c g c

3240 ori c t c t g c t g a a g c c a g t t a c c t t c g g a a a a a g a g t t g g t a g c t c t t g a t c c g g c a a a c a a a g a g a c g a c t t c g g t c a a t g g a a g c c t t t t t c t c a a c c a t c g a g a a c t a g g c c g t t t g t t t

3300 ori c c a c c g c t g g t a g c g g t g g t t t t t t t g t t t g c a a g c a g c a g a t t a c g c g c a g a a a a a a a g g g t g g c g a c c a t c g c c a c c a a a a a a a c a a a c g t t c g t c g t c t a a t g c g c g t c t t t t t t t c

3360 ori g a t c t c a a g a a g a t c c t t t g a t c t t t t c t a c g g g g t c t a a c g c t c a g t g g a a c g a a a a c t c t a g a g t t c t t c t a g g a a a c t a g a a a a g a t g c c c c a g a t t g c g a g t c a c c t t g c t t t t g a

BsmINsiI 3420 260 *KGVVKT SmR *KGVVKT c a c g t t a a g g g a t t t t g g t c a t g c a t t c t a g g t g a t t a t t a t t t g c c g a c t a c c t t g g t g g t g c a a t t c c c t a a a a c c a g t a c g t a a g a t c c a c t a a t a a t a a a c g g c t g a t g g a a c c a c

BssHII 3480 255 250 245 240 IEGKVYHVFEELQDARSALR SmR IEGKVYHVFEELQDARSALR a t c t c g c c t t t c a c g t a g t g g a c a a a t t c t t c c a a c t g a t c t g c g c g c g a g g c c a a g c g a t a g a g c g g a a a g t g c a t c a c c t g t t t a a g a a g g t t g a c t a g a c g c g c g c t c c g g t t c g c t

NgoMIVNaeI 3540 235 230 225 220 DEEQGLYAQRAELIVPQYQA SmR DEEQGLYAQRAELIVPQYQA t c t t c t t c t t g t c c a a g a t a a g c c t g t c t a g c t t c a a g t a t g a c g g g c t g a t a c t g g g c c a g a a g a a g a a c a g g t t c t a t t c g g a c a g a t c g a a g t t c a t a c t g c c c g a c t a t g a c c c g g

BglI 3566 215 210 PLREMAWDA SmR PLREMAWDA g g c a g g c g c t c c a t t g c c c a g t c g g c c c g t c c g c g a g g t a a c g g g t c a g c c g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.