Addgene C17A Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: C17A Sequencing Result

Map View

600 400 200 End (648) BsrFI (614) BssSI - BssSαI (584) PstI (564) SfcI (560) BtsI - BtsαI (557) PfoI * (483) EXFP-R (444 .. 463) Bpu10I (162) BlpI (144) BsrGI (55) BamHI (47) BsaWI (41) XbaI * (35) BclI * (25) BsaBI * (24) Start (0) VC155 C17A 648 bp

Sequence View

BsrGIBamHIBsaWIXbaI*BsaBI*BclI*Start (0) 5ʹ 3ʹ 60 (in frame with VC155) *RSGTSG KYL VC155 LQCGMADYDQLSRSGGSLVQ *RSGTSGKYL *IRHIGQV t c t a c a a t g t g g t a t g g c t g a t t a t g a t c a g t t a t c t a g a t c c g g t g g a t c c c t t g t a c a a g a t g t t a c a c c a t a c c g a c t a a t a c t a g t c a a t a g a t c t a g g c c a c c t a g g g a a c a t g t

120 235 230 225 220 EDMGLTIGAATVFELLVXHD VC155 LVHAESDPGGGHELQQDXVI EDMGLTIGAATVFELLVXHD ARGHRSHDRRRDRVGAPGXS g c t c g t c c a t g c c g a g a g t g a t c c c g g c g g c g g t c a c g a a c t c c a g c a g g a c c a n g t g a t c g a g c a g g t a c g g c t c t c a c t a g g g c c g c c g c c a g t g c t t g a g g t c g t c c t g g t n c a c t a

Bpu10IBlpI 180 215 210 205 200 RKENPDXSLXSLYSLYHNDP VC155 ALLVGVXAQLGQVAQVVVVG RKENPDXSLXSLYSLYHNDP RAERQPRXEAXVPLEPLPQR c g c g c t t c t c g t t g g g g t c t t n g c t c a g c t n g g a c a g g t a g c t c a g g t a g t g g t t g t c g g g c g c g a a g a g c a a c c c c a g a a n c g a g t c g a n c c t g t c c a t c g a g t c c a t c a c c a a c a g c c

240 195 190 185 180 LLVPGDGIPTNQQYHDALQV VC155 QQHGAVADGGVLLVVVGELH LLVPGDGIPTNQQYHDALQV AAARPRRRHPHEAPLPRRAA g c a g c a g c a c g g g g c c g t c g c c g a t g g g g g t g t t c t g c t g g t a g t g g t c g g c g a g c t g c a c g t c g t c g t g c c c c g g c a g c g g c t a c c c c c a c a a g a c g a c c a t c a c c a g c c g c t c g a c g t

300 175 170 165 160 GGDEINHRIKFNAKIGNKQK VC155 AAVLDVVADLEVGLDAVLLL GGDEINHRIKFNAKIGNKQK RRRGRHQPPDQLQGQHREEA c g c c g c c g t c c t c g a t g t t g t g g c g g a t c t t g a a g t t g g c c t t g a t g c c g t t c t t c t g c t g c g g c g g c a g g a g c t a c a a c a c c g c c t a g a a c t t c a a c c g g a a c t a c g g c a a g a a g a c g a

360 155 D VC155 VGGDIDVVAVVVVLQLVPQD DATIYVNHSNYNYELKHGLI QRRHYLRQPQQLQVGAQAGP t g t c g g c g g t g a t a t a g a c g t t g t g g c t g t t g t a g t t g t a c t c c a g c t t g t g c c c c a g g a a c a g c c g c c a c t a t a t c t g c a a c a c c g a c a a c a t c a a c a t g a g g t c g a a c a c g g g g t c c t

420 VAVLLEVDALQLDAVHQGVA NGDEKFDIGKLEIRNVLTDG HQRGGQLRHGEARHPEGPHR t g t t g c c g t c c t c c t t g a a g t c g a t g c c c t t c a g c t c g a t g c g g t t c a c c a g g g t g t c g c a c a a c g g c a g g a g g a a c t t c a g c t a c g g g a a g t c g a g c t a c g c c a a g t g g t c c c a c a g c g

480 G T C T T G T A G T T G C C G T C G T C EXFP-R LELHLGAGLVVAVVLEEDGA EFKVEARTKYNGDDKFFITR GRVEGRRPDQLQRRGQLLHH c c t c g a a c t t c a c c t c g g c g c g g g t c t t g t a g t t g c c g t c g t c c t t g a a g a a g a t g g t g c g g a g c t t g a a g t g g a g c c g c g c c c a g a a c a t c a a c g g c a g c a g g a a c t t c t t c t a c c a c g

PfoI* 540 LLDVAFGHGGLEEVVLLHVV EQVYGEPMASKFFDHQKMHD AGPRLRRAHRVQLLRAAEHP g c t c c t g g a c g t a g c c t t c g g g c a t g g c g g a c t t g a a g a a g t c g t g c t g c t t c a t g t g g t c g a g g a c c t g c a t c g g a a g c c c g t a c c g c c t g a a c t t c t t c a g c a c g a c g a a g t a c a c c a

BssSαIBssSIPstIBtsαIBtsISfcI 600 GVAGEALQAAAEGGHEGGPG PYRAFCQLGCGLTTVLTPWP RPLPRLVAPRLRPHDRPHAL c g g g g t a g c g g g c g a a g c a c t g c a g g c c g c a g c c g a g g g t g g t c a c g a g g g t g g g c c a g g g c c c c a t c g c c c g c t t c g t g a c g t c c g g c g t c g g c t c c c a c c a g t g c t c c c a c c c g g t c c

End (648) BsrFI 3ʹ 5ʹ 648 HGQLAGGADELQGQL VPLKGTTCILKLTLK ARAAQRHHLHAEPDAQ g c a c g g g c a g c t t g c c g g t g g t g c a g a t g a g c t t c a g g g t c a g c t t g c c g t g c c c g t c g a a c g g c c a c c a c g t c t a c t c g a a g t c c c a g t c g a a c g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.