Addgene pRcCMV-STAT13F Sequencing Result - Sequence Analyzer Skip to main content
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Sequence Analyzer: pRcCMV-STAT13F Sequencing Result


Map View

NruI (7834) pRS-marker (7670 .. 7689) BglII (7638) SgrDI (7624) Amp-R (7253 .. 7272) PvuI (7073) pBR322ori-F (5951 .. 5970) L4440 (5700 .. 5717) CAP binding site M13/pUC Reverse (5482 .. 5504) lac operator M13 Reverse (5469 .. 5485) EBV-rev (5395 .. 5414) SV40pA-R (5341 .. 5360) BstBI (5146) Neo-F (5000 .. 5019) RsrII (4980) BssHII (4861) PflFI - Tth111I (4582) MscI (4546) PluTI (4467) SfoI (4465) NarI (4464) KasI (4463) Neo-R (4390 .. 4409) StuI (4253) SfiI (4207) CsiI - SexAI * (4021) pBABE 3' (3935 .. 3955) MluI (0) CMV enhancer NdeI (256) SnaBI (362) CMV-F (541 .. 561) T7 (635 .. 654) HindIII (661) NotI (737) EcoNI (802) PshAI (1768) PaqCI (1982) PpuMI (2020) BsmBI - Esp3I (2095) PflMI (2171) BbvCI (2976) PspOMI (3076) ApaI (3080) SP6 promoter SP6 (3086 .. 3103) BGH-rev (3123 .. 3140) PspXI (3382) F1ori-R (3486 .. 3505) F1ori-F (3696 .. 3717) SwaI (3854) pRcCMV-STAT13F 7854 bp

Sequence View

MluI 5ʹ 3ʹ 60 CMV enhancer c g c g t t g a c a t t g a t t a t t g a c t a g t t a t t a a t a g t a a t c a a t t a c g g g g t c a t t a g t t c g c g c a a c t g t a a c t a a t a a c t g a t c a a t a a t t a t c a t t a g t t a a t g c c c c a g t a a t c a a g

120 CMV enhancer a t a g c c c a t a t a t g g a g t t c c g c g t t a c a t a a c t t a c g g t a a a t g g c c c g c c t g g c t g a c t a t c g g g t a t a t a c c t c a a g g c g c a a t g t a t t g a a t g c c a t t t a c c g g g c g g a c c g a c t g

180 CMV enhancer c g c c c a a c g a c c c c c g c c c a t t g a c g t c a a t a a t g a c g t a t g t t c c c a t a g t a a c g c c a a g c g g g t t g c t g g g g g c g g g t a a c t g c a g t t a t t a c t g c a t a c a a g g g t a t c a t t g c g g t t

240 CMV enhancer t a g g g a c t t t c c a t t g a c g t c a a t g g g t g g a g t a t t t a c g g t a a a c t g c c c a c t t g g c a g a t c c c t g a a a g g t a a c t g c a g t t a c c c a c c t c a t a a a t g c c a t t t g a c g g g t g a a c c g t c

NdeI 300 CMV enhancer t a c a t c a a g t g t a t c a t a t g c c a a g t a c g c c c c c t a t t g a c g t c a a t g a c g g t a a a t g g c a t g t a g t t c a c a t a g t a t a c g g t t c a t g c g g g g g a t a a c t g c a g t t a c t g c c a t t t a c c g

360 CMV enhancer c c g c c t g g c a t t a t g c c c a g t a c a t g a c c t t a t g g g a c t t t c c t a c t t g g c a g t a c a t c t g g c g g a c c g t a a t a c g g g t c a t g t a c t g g a a t a c c c t g a a a g g a t g a a c c g t c a t g t a g a

SnaBI 420 CMV enhancer CMV promoter a c g t a t t a g t c a t c g c t a t t a c c a t g g t g a t g c g g t t t t g g c a g t a c a t c a a t g g g c g t g t g c a t a a t c a g t a g c g a t a a t g g t a c c a c t a c g c c a a a a c c g t c a t g t a g t t a c c c g c a c

480 CMV promoter g a t a g c g g t t t g a c t c a c g g g g a t t t c c a a g t c t c c a c c c c a t t g a c g t c a a t g g g a g t t c t a t c g c c a a a c t g a g t g c c c c t a a a g g t t c a g a g g t g g g g t a a c t g c a g t t a c c c t c a a

540 CMV promoter t g t t t t g g c a c c a a a a t c a a c g g g a c t t t c c a a a a t g t c g t a a c a a c t c c g c c c c a t t g a a c a a a a c c g t g g t t t t a g t t g c c c t g a a a g g t t t t a c a g c a t t g t t g a g g c g g g g t a a c t

600 CMV promoter C G C A A A T G G G C G G T A G G C G T G CMV-F c g c a a a t g g g c g g t a g g c g t g t a c g g t g g g a g g t c t a t a t a a g c a g a g c t c t c t g g c t a a g c g t t t a c c c g c c a t c c g c a c a t g c c a c c c t c c a g a t a t a t t c g t c t c g a g a g a c c g a t t

660 T7 promoter T A A T A C G A C T C A C T A T A G G G T7 c t a g a g a a c c c a c t g c t t a c t g g c t t a t c g a a a t t a a t a c g a c t c a c t a t a g g g a g a c c c g a t c t c t t g g g t g a c g a a t g a c c g a a t a g c t t t a a t t a t g c t g a g t g a t a t c c c t c t g g g

HindIII 720 a a g c t t g g t a c c g a g c t c g g a t c c a c t a g t a a c g g c c g c c a g t g t g c t g g a a t t c t g c a g t t c g a a c c a t g g c t c g a g c c t a g g t g a t c a t t g c c g g c g g t c a c a c g a c c t t a a g a c g t c

NotI 780 MSQWYELQ a t a t c c a t c a c a c t g g c g g c c g c a c a a g g t g g c a g g a t g t c t c a g t g g t a c g a a c t t c a g t a t a g g t a g t g t g a c c g c c g g c g t g t t c c a c c g t c c t a c a g a g t c a c c a t g c t t g a a g t c

EcoNI 840 QLDSKFLEQVHQLYDDSFPM c a g c t t g a c t c a a a a t t c c t g g a g c a g g t t c a c c a g c t t t a t g a t g a c a g t t t t c c c a t g g t c g a a c t g a g t t t t a a g g a c c t c g t c c a a g t g g t c g a a a t a c t a c t g t c a a a a g g g t a c

900 EIRQYLAQWLEKQDWEHAAN g a a a t c a g a c a g t a c c t g g c a c a g t g g t t a g a a a a g c a a g a c t g g g a g c a c g c t g c c a a t c t t t a g t c t g t c a t g g a c c g t g t c a c c a a t c t t t t c g t t c t g a c c c t c g t g c g a c g g t t a

960 DVSFATIRFHDLLSQLDDQY g a t g t t t c a t t t g c c a c c a t c c g t t t t c a t g a c c t c c t g t c a c a g c t g g a t g a t c a a t a t c t a c a a a g t a a a c g g t g g t a g g c a a a a g t a c t g g a g g a c a g t g t c g a c c t a c t a g t t a t a

1020 SRFSLENNFLLQHNIRKSKR a g t c g c t t t t c t t t g g a g a a t a a c t t c t t g c t a c a g c a t a a c a t a a g g a a a a g c a a g c g t t c a g c g a a a a g a a a c c t c t t a t t g a a g a a c g a t g t c g t a t t g t a t t c c t t t t c g t t c g c a

1080 NLQDNFQEDPIQMSMIIYSC a a t c t t c a g g a t a a t t t t c a g g a a g a c c c a a t c c a g a t g t c t a t g a t c a t t t a c a g c t g t t t a g a a g t c c t a t t a a a a g t c c t t c t g g g t t a g g t c t a c a g a t a c t a g t a a a t g t c g a c a

1140 LKEERKILENAQRFNQAQSG c t g a a g g a a g a a a g g a a a a t t c t g g a a a a c g c c c a g a g a t t t a a t c a g g c t c a g t c g g g g g a c t t c c t t c t t t c c t t t t a a g a c c t t t t g c g g g t c t c t a a a t t a g t c c g a g t c a g c c c c

1200 NIQSTVMLDKQKELDSKVRN a a t a t t c a g a g c a c a g t g a t g t t a g a c a a a c a g a a a g a g c t t g a c a g t a a a g t c a g a a a t t t a t a a g t c t c g t g t c a c t a c a a t c t g t t t g t c t t t c t c g a a c t g t c a t t t c a g t c t t t a

1260 VKDKVMCIEHEIKSLEDLQD g t g a a g g a c a a g g t t a t g t g t a t a g a g c a t g a a a t c a a g a g c c t g g a a g a t t t a c a a g a t c a c t t c c t g t t c c a a t a c a c a t a t c t c g t a c t t t a g t t c t c g g a c c t t c t a a a t g t t c t a

1320 EYDFKCKTLQNREHETNGVA g a a t a t g a c t t c a a a t g c a a a a c c t t g c a g a a c a g a g a a c a c g a g a c c a a t g g t g t g g c a c t t a t a c t g a a g t t t a c g t t t t g g a a c g t c t t g t c t c t t g t g c t c t g g t t a c c a c a c c g t

1380 KSDQKQEQLLLKKMYLMLDN a a g a g t g a t c a g a a a c a a g a a c a g c t g t t a c t c a a g a a g a t g t a t t t a a t g c t t g a c a a t t t c t c a c t a g t c t t t g t t c t t g t c g a c a a t g a g t t c t t c t a c a t a a a t t a c g a a c t g t t a

1440 KRKEVVHKIIELLNVTELTQ a a g a g a a a g g a a g t a g t t c a c a a a a t a a t a g a g t t g c t g a a t g t c a c t g a a c t t a c c c a g t t c t c t t t c c t t c a t c a a g t g t t t t a t t a t c t c a a c g a c t t a c a g t g a c t t g a a t g g g t c

1500 NALINDELVEWKRRQQSACI a a t g c c c t g a t t a a t g a t g a a c t a g t g g a g t g g a a g c g g a g a c a g c a g a g c g c c t g t a t t t t a c g g g a c t a a t t a c t a c t t g a t c a c c t c a c c t t c g c c t c t g t c g t c t c g c g g a c a t a a

1560 GGPPNACLDQLQNWFTIVAE g g g g g g c c g c c c a a t g c t t g c t t g g a t c a g c t g c a g a a c t g g t t c a c t a t a g t t g c g g a g c c c c c c g g c g g g t t a c g a a c g a a c c t a g t c g a c g t c t t g a c c a a g t g a t a t c a a c g c c t c

1620 SLQQVRQQLKKLEELEQKYT a g t c t g c a g c a a g t t c g g c a g c a g c t t a a a a a g t t g g a g g a a t t g g a a c a g a a a t a c a c c t c a g a c g t c g t t c a a g c c g t c g t c g a a t t t t t c a a c c t c c t t a a c c t t g t c t t t a t g t g g

1680 YEHDPITKNKQVLWDRTFSL t a c g a a c a t g a c c c t a t c a c a a a a a a c a a a c a a g t g t t a t g g g a c c g c a c c t t c a g t c t t a t g c t t g t a c t g g g a t a g t g t t t t t t g t t t g t t c a c a a t a c c c t g g c g t g g a a g t c a g a a

1740 FQQLIQSSFVVERQPCMPTH t t c c a g c a g c t c a t t c a g a g c t c g t t t g t g g t g g a a a g a c a g c c c t g c a t g c c a a c g c a c a a g g t c g t c g a g t a a g t c t c g a g c a a a c a c c a c c t t t c t g t c g g g a c g t a c g g t t g c g t g

PshAI 1800 PQRPLVLKTGVQFTVKLRLL c c t c a g a g g c c g c t g g t c t t g a a g a c a g g g g t c c a g t t c a c t g t g a a g t t g a g a c t g t t g g g a g t c t c c g g c g a c c a g a a c t t c t g t c c c c a g g t c a a g t g a c a c t t c a a c t c t g a c a a c

1860 VKLQELNYNLKVKVLFDKDV g t g a a a t t g c a a g a g c t g a a t t a t a a t t t g a a a g t c a a a g t c t t a t t t g a t a a a g a t g t g c a c t t t a a c g t t c t c g a c t t a a t a t t a a a c t t t c a g t t t c a g a a t a a a c t a t t t c t a c a c

1920 NERNTVKGFRKFNILGTHTK a a t g a g a g a a a t a c a g t a a a a g g a t t t a g g a a g t t c a a c a t t t t g g g c a c g c a c a c a a a a t t a c t c t c t t t a t g t c a t t t t c c t a a a t c c t t c a a g t t g t a a a a c c c g t g c g t g t g t t t t

1980 VMNMEESTNGSLAAEFRHLQ g t g a t g a a c a t g g a g g a g t c c a c c a a t g g c a g t c t g g c g g c t g a a t t t c g g c a c c t g c a a c a c t a c t t g t a c c t c c t c a g g t g g t t a c c g t c a g a c c g c c g a c t t a a a g c c g t g g a c g t t

PpuMIPaqCI 2040 LKEQKNAGTRTNEGPLIVTE t t g a a a g a a c a g a a a a a t g c t g g c a c c a g a a c g a a t g a g g g t c c t c t c a t c g t t a c t g a a a a c t t t c t t g t c t t t t t a c g a c c g t g g t c t t g c t t a c t c c c a g g a g a g t a g c a a t g a c t t

BsmBIEsp3I 2100 ELHSLSFETQLCQPGLVIDL g a g c t t c a c t c c c t t a g t t t t g a a a c c c a a t t g t g c c a g c c t g g t t t g g t a a t t g a c c t c c t c g a a g t g a g g g a a t c a a a a c t t t g g g t t a a c a c g g t c g g a c c a a a c c a t t a a c t g g a g

2160 ETTSLPVVVISNVSQLPSGW g a g a c g a c c t c t c t g c c c g t t g t g g t g a t c t c c a a c g t c a g c c a g c t c c c g a g c g g t t g g c t c t g c t g g a g a g a c g g g c a a c a c c a c t a g a g g t t g c a g t c g g t c g a g g g c t c g c c a a c c

PflMI 2220 ASILWYNMLVAEPRNLSFFL g c c t c c a t c c t t t g g t a c a a c a t g c t g g t g g c g g a a c c c a g g a a t c t g t c c t t c t t c c t g c g g a g g t a g g a a a c c a t g t t g t a c g a c c a c c g c c t t g g g t c c t t a g a c a g g a a g a a g g a c

2280 TPPCARWAQLSEVLSWQFSS a c t c c a c c a t g t g c a c g a t g g g c t c a g c t t t c a g a a g t g c t g a g t t g g c a g t t c t c g t c c t g a g g t g g t a c a c g t g c t a c c c g a g t c g a a a g t c t t c a c g a c t c a a c c g t c a a g a g c a g g

2340 TTKRGLSIEQLTTLAEKLLG a c c a c c a a g c g a g g g c t g a g c a t c g a g c a g c t g a c a a c g c t g g c t g a g a a g c t c c t a g g g t g g t g g t t c g c t c c c g a c t c g t a g c t c g t c g a c t g t t g c g a c c g a c t c t t c g a g g a t c c c

2400 PGVNYSGCQITWAKFCKENM c c t g g t g t g a a c t a c t c a g g g t g t c a g a t c a c a t g g g c t a a a t t c t g c a a a g a a a a c a t g g g a c c a c a c t t g a t g a g t c c c a c a g t c t a g t g t a c c c g a t t t a a g a c g t t t c t t t t g t a c

2460 AGKGFSFWVWLDNIIDLVKK g c t g g c a a g g g c t t c t c c t t c t g g g t c t g g c t a g a c a a t a t c a t c g a c c t t g t g a a a a a g c g a c c g t t c c c g a a g a g g a a g a c c c a g a c c g a t c t g t t a t a g t a g c t g g a a c a c t t t t t c

2520 YILALWNEGYIMGFISKERE t a t a t c t t g g c c c t t t g g a a t g a a g g g t a c a t c a t g g g t t t c a t c a g c a a g g a g c g g g a g a t a t a g a a c c g g g a a a c c t t a c t t c c c a t g t a g t a c c c a a a g t a g t c g t t c c t c g c c c t c

2580 RAILSTKPPGTFLLRFSESS c g g g c c a t c c t a a g c a c a a a g c c c c c g g g c a c c t t c c t a c t g c g c t t c a g c g a g a g c a g c g c c c g g t a g g a t t c g t g t t t c g g g g g c c c g t g g a a g g a t g a c g c g a a g t c g c t c t c g t c g

2640 KEGGVTFTWVEKDISGKTQI a a a g a a g g a g g g g t c a c t t t c a c t t g g g t g g a a a a g g a c a t c a g t g g c a a g a c c c a g a t c t t t c t t c c t c c c c a g t g a a a g t g a a c c c a c c t t t t c c t g t a g t c a c c g t t c t g g g t c t a g

2700 QSVEPYTKQQLNNMSFAEII c a g t c t g t a g a g c c a t a c a c c a a g c a g c a g c t g a a c a a c a t g t c a t t t g c t g a a a t c a t c g t c a g a c a t c t c g g t a t g t g g t t c g t c g t c g a c t t g t t g t a c a g t a a a c g a c t t t a g t a g

2760 MGYKIMDATNILVSPLVYLY a t g g g c t a t a a g a t c a t g g a t g c g a c c a a c a t c c t g g t g t c t c c a c t t g t c t a c c t c t a c t a c c c g a t a t t c t a g t a c c t a c g c t g g t t g t a g g a c c a c a g a g g t g a a c a g a t g g a g a t g

2820 PDIPKEEAFGKYCRPESQEH c c c g a c a t t c c c a a g g a g g a g g c a t t t g g a a a g t a c t g t a g g c c c g a g a g c c a g g a g c a c g g g c t g t a a g g g t t c c t c c t c c g t a a a c c t t t c a t g a c a t c c g g g c t c t c g g t c c t c g t g

2880 PEADPGSAAPYLKTKFICVT c c c g a a g c c g a c c c a g g t a g t g c t g c c c c g t a c c t g a a g a c c a a g t t c a t c t g t g t g a c a g g g c t t c g g c t g g g t c c a t c a c g a c g g g g c a t g g a c t t c t g g t t c a a g t a g a c a c a c t g t

2940 PTTCSNTIDLPMSPRTLDSL c c a a c g a c c t g c a g c a a t a c c a t t g a c c t g c c g a t g t c c c c c c g c a c t t t a g a t t c a t t g g g t t g c t g g a c g t c g t t a t g g t a a c t g g a c g g c t a c a g g g g g g c g t g a a a t c t a a g t a a c

BbvCI 3000 MQFGNNGEGAEPSAGGQFES a t g c a g t t t g g a a a t a a c g g t g a a g g t g c t g a g c c c t c a g c a g g a g g g c a g t t t g a g t c g t a c g t c a a a c c t t t a t t g c c a c t t c c a c g a c t c g g g a g t c g t c c t c c c g t c a a a c t c a g c

3060 1 DYKD FLAG LTFDMDLTSECATSPMDYKD c t c a c g t t t g a c a t g g a t t t g a c c t c g g a g t g t g c t a c c t c c c c c a t g g a c t a c a a a g a c g a g t g c a a a c t g t a c c t a a a c t g g a g c c t c a c a c g a t g g a g g g g g t a c c t g a t g t t t c t g

PspOMIApaI 3120 5 DDDK * FLAG SP6 promoter G A T A T C A C A G T G G A T T T A SP6 DDDK* g a t g a c g a t a a a t g a g g g c c c t a t t c t a t a g t g t c a c c t a a a t g c t a g a g c t c g c t g a t c c t a c t g c t a t t t a c t c c c g g g a t a a g a t a t c a c a g t g g a t t t a c g a t c t c g a g c g a c t a g

3180 bGH poly(A) signal G G A G C T G A C A C G G A A G A T BGH-rev a g c c t c g a c t g t g c c t t c t a g t t g c c a g c c a t c t g t t g t t t g c c c c t c c c c c g t g c c t t c t c g g a g c t g a c a c g g a a g a t c a a c g g t c g g t a g a c a a c a a a c g g g g a g g g g g c a c g g a a g

3240 bGH poly(A) signal c t t g a c c c t g g a a g g t g c c a c t c c c a c t g t c c t t t c c t a a t a a a a t g a g g a a a t t g c a t c g a a c t g g g a c c t t c c a c g g t g a g g g t g a c a g g a a a g g a t t a t t t t a c t c c t t t a a c g t a g

3300 bGH poly(A) signal g c a t t g t c t g a g t a g g t g t c a t t c t a t t c t g g g g g g t g g g g t g g g g c a g g a c a g c a a g g g c g t a a c a g a c t c a t c c a c a g t a a g a t a a g a c c c c c c a c c c c a c c c c g t c c t g t c g t t c c c

3360 bGH poly(A) signal g g a g g a t t g g g a a g a c a a t a g c a g g c a t g c t g g g g a t g c g g t g g g c t c t a t g g c t t c t g a c c t c c t a a c c c t t c t g t t a t c g t c c g t a c g a c c c c t a c g c c a c c c g a g a t a c c g a a g a c t

PspXI 3420 M13 ori g g c g g a a a g a a c c a g c t g g g g c t c g a g g g g g g a t c c c c a c g c g c c c t g t a g c g g c g c a t t c c g c c t t t c t t g g t c g a c c c c g a g c t c c c c c c t a g g g g t g c g c g g g a c a t c g c c g c g t a a

3480 M13 ori a a g c g c g g c g g g t g t g g t g g t t a c g c g c a g c g t g a c c g c t a c a c t t g c c a g c g c c c t a g c t t c g c g c c g c c c a c a c c a c c a a t g c g c g t c g c a c t g g c g a t g t g a a c g g t c g c g g g a t c g

3540 M13 ori G A G G A A A G C G A A A G A A G G G A F1ori-R g c c c g c t c c t t t c g c t t t c t t c c c t t c c t t t c t c g c c a c g t t c g c c g g c t t t c c c c g t c a c g g g c g a g g a a a g c g a a a g a a g g g a a g g a a a g a g c g g t g c a a g c g g c c g a a a g g g g c a g t

3600 M13 ori a g c t c t a a a t c g g g g g c t c c c t t t a g g g t t c c g a t t t a g t g c t t t a c g g c a c c t c g a c c c t c g a g a t t t a g c c c c c g a g g g a a a t c c c a a g g c t a a a t c a c g a a a t g c c g t g g a g c t g g g

3660 M13 ori c a a a a a a c t t g a t t a g g g t g a t g g t t c a c g t a g t g g g c c a t c g c c c t g a t a g a c g g t t t t g t t t t t t g a a c t a a t c c c a c t a c c a a g t g c a t c a c c c g g t a g c g g g a c t a t c t g c c a a a a

3720 M13 ori G T G G A C T C T T G T T C C A A A C T G G F1ori-F t c g c c c t t t g a c g t t g g a g t c c a c g t t c t t t a a t a g t g g a c t c t t g t t c c a a a c t g g a a c a g c g g g a a a c t g c a a c c t c a g g t g c a a g a a a t t a t c a c c t g a g a a c a a g g t t t g a c c t t g

3780 M13 ori a a c a c t c a a c c c t a t c t c g g t c t a t t c t t t t g a t t t a t a a g g g a t t t t g c c g a t t t c g g c t t g t g a g t t g g g a t a g a g c c a g a t a a g a a a a c t a a a t a t t c c c t a a a a c g g c t a a a g c c g

3840 M13 ori c t a t t g g t t a a a a a a t g a g c t g a t t t a a c a a a a a t t t a a c g c g a a t t t t a a c a a a a t a t t g a t a a c c a a t t t t t t a c t c g a c t a a a t t g t t t t t a a a t t g c g c t t a a a a t t g t t t t a t a a

SwaI 3900 M13 ori a a c g c t t a c a a t t t a a a t a t t t g c t t a t a c a a t c t t c c t g t t t t t g g g g c t t t t c t g a t t t t g c g a a t g t t a a a t t t a t a a a c g a a t a t g t t a g a a g g a c a a a a a c c c c g a a a a g a c t a a

3960 M13 ori SV40 promoter C C T T A C A C A C A G T C A A T C C C A pBABE 3' a t c a a c c g g g g t g g g t a c c g a g c t c g a a t t c t g t g g a a t g t g t g t c a g t t a g g g t g t g g a t a g t t g g c c c c a c c c a t g g c t c g a g c t t a a g a c a c c t t a c a c a c a g t c a a t c c c a c a c c t

4020 SV40 promoter a a g t c c c c a g g c t c c c c a g c a g g c a g a a g t a t g c a a a g c a t g c a t c t c a a t t a g t c a g c a t t c a g g g g t c c g a g g g g t c g t c c g t c t t c a t a c g t t t c g t a c g t a g a g t t a a t c a g t c g t

SexAI*CsiI 4080 SV40 promoter a c c a g g t g t g g a a a g t c c c c a g g c t c c c c a g c a g g c a g a a g t a t g c a a a g c a t g c a t c t c t g g t c c a c a c c t t t c a g g g g t c c g a g g g g t c g t c c g t c t t c a t a c g t t t c g t a c g t a g a g

4140 SV40 promoter SV40 ori a a t t a g t c a g c a a c c a t a g t c c c g c c c c t a a c t c c g c c c a t c c c g c c c c t a a c t c c g c c c t t a a t c a g t c g t t g g t a t c a g g g c g g g g a t t g a g g c g g g t a g g g c g g g g a t t g a g g c g g g

4200 SV40 promoter SV40 ori a g t t c c g c c c a t t c t c c g c c c c a t g g c t g a c t a a t t t t t t t t a t t t a t g c a g a g g c c g a g t c a a g g c g g g t a a g a g g c g g g g t a c c g a c t g a t t a a a a a a a a t a a a t a c g t c t c c g g c t c

StuISfiI 4260 SV40 promoter SV40 ori g c c g c c t c g g c c t c t g a g c t a t t c c a g a a g t a g t g a g g a g g c t t t t t t g g a g g c c t a g g c c g g c g g a g c c g g a g a c t c g a t a a g g t c t t c a t c a c t c c t c c g a a a a a a c c t c c g g a t c c g

4320 SV40 promoter t t t t g c a a a a a g c t c c c g g g a g c t t g g a t a t c c a t t t t c g g a t c t g a t c a a g a g a c a g g a a a a a c g t t t t t c g a g g g c c c t c g a a c c t a t a g g t a a a a g c c t a g a c t a g t t c t c t g t c c t

4380 1 5 10 15 MIEQDGLHAGSPAAW NeoR/KanR MIEQDGLHAGSPAAW t g a g g a t c g t t t c g c a t g a t t g a a c a a g a t g g a t t g c a c g c a g g t t c t c c g g c c g c t t g g a c t c c t a g c a a a g c g t a c t a a c t t g t t c t a c c t a a c g t g c g t c c a a g a g g c c g g c g a a c c

4440 20 25 30 35 VERLFGYDWAQQTIGCSDAA NeoR/KanR G A T A A G C C G A T A C T G A C C C G Neo-R VERLFGYDWAQQTIGCSDAA g t g g a g a g g c t a t t c g g c t a t g a c t g g g c a c a a c a g a c a a t c g g c t g c t c t g a t g c c g c c c a c c t c t c c g a t a a g c c g a t a c t g a c c c g t g t t g t c t g t t a g c c g a c g a g a c t a c g g c g g

KasINarISfoIPluTI 4500 40 45 50 55 VFRLSAQGRPVLFVKTDLSG NeoR/KanR VFRLSAQGRPVLFVKTDLSG g t g t t c c g g c t g t c a g c g c a g g g g c g c c c g g t t c t t t t t g t c a a g a c c g a c c t g t c c g g t c a c a a g g c c g a c a g t c g c g t c c c c g c g g g c c a a g a a a a a c a g t t c t g g c t g g a c a g g c c a

MscI 4560 60 65 70 75 ALNELQDEAARLSWLATTGV NeoR/KanR ALNELQDEAARLSWLATTGV g c c c t g a a t g a a c t g c a g g a c g a g g c a g c g c g g c t a t c g t g g c t g g c c a c g a c g g g c g t t c g g g a c t t a c t t g a c g t c c t g c t c c g t c g c g c c g a t a g c a c c g a c c g g t g c t g c c c g c a a

Tth111IPflFI 4620 80 85 90 95 PCAAVLDVVTEAGRDWLLLG NeoR/KanR PCAAVLDVVTEAGRDWLLLG c c t t g c g c a g c t g t g c t c g a c g t t g t c a c t g a a g c g g g a a g g g a c t g g c t g c t a t t g g g c g g a a c g c g t c g a c a c g a g c t g c a a c a g t g a c t t c g c c c t t c c c t g a c c g a c g a t a a c c c g

4680 100 105 110 115 EVPGQDLLSSHLAPAEKVSI NeoR/KanR EVPGQDLLSSHLAPAEKVSI *RVKSRGLFYGD g a a g t g c c g g g g c a g g a t c t c c t g t c a t c t c a c c t t g c t c c t g c c g a g a a a g t a t c c a t c c t t c a c g g c c c c g t c c t a g a g g a c a g t a g a g t g g a a c g a g g a c g g c t c t t t c a t a g g t a g

4740 120 125 130 135 MADAMRRLHTLDPATCPFDH NeoR/KanR MADAMRRLHTLDPATCPFDH HSICHPPQMRKIRSGAWEVV a t g g c t g a t g c a a t g c g g c g g c t g c a t a c g c t t g a t c c g g c t a c c t g c c c a t t c g a c c a c t a c c g a c t a c g t t a c g c c g c c g a c g t a t g c g a a c t a g g c c g a t g g a c g g g t a a g c t g g t g

4800 140 145 150 155 QAKHRIERARTRMEAGLVDQ NeoR/KanR QAKHRIERARTRMEAGLVDQ LRFMADLSCTSPHFGTKDIL c a a g c g a a a c a t c g c a t c g a g c g a g c a c g t a c t c g g a t g g a a g c c g g t c t t g t c g a t c a g g t t c g c t t t g t a g c g t a g c t c g c t c g t g c a t g a g c c t a c c t t c g g c c a g a a c a g c t a g t c

4860 160 165 170 175 DDLDEEHQGLAPAELFARLK NeoR/KanR DDLDEEHQGLAPAELFARLK IIQVFLMLPERWGFQEGPEL g a t g a t c t g g a c g a a g a g c a t c a g g g g c t c g c g c c a g c c g a a c t g t t c g c c a g g c t c a a g c t a c t a g a c c t g c t t c t c g t a g t c c c c g a g c g c g g t c g g c t t g a c a a g c g g t c c g a g t t c

BssHII 4920 180 185 190 195 ARMPDGEDLVVTHGDACLPN NeoR/KanR ARMPDGEDLVVTHGDACLPN RAHGVALIEDHGMAIGAQRI g c g c g c a t g c c c g a c g g c g a g g a t c t c g t c g t g a c c c a t g g c g a t g c c t g c t t g c c g a a t c g c g c g t a c g g g c t g c c g c t c c t a g a g c a g c a c t g g g t a c c g c t a c g g a c g a a c g g c t t a

4980 200 205 210 215 IMVENGRFSGFIDCGRLGVA NeoR/KanR IMVENGRFSGFIDCGRLGVA DHHFIAAKRSEDVTAPQTHR a t c a t g g t g g a a a a t g g c c g c t t t t c t g g a t t c a t c g a c t g t g g c c g g c t g g g t g t g g c g t a g t a c c a c c t t t t a c c g g c g a a a a g a c c t a a g t a g c t g a c a c c g g c c g a c c c a c a c c g c

RsrII 5040 220 225 230 235 DRYQDIALATRDIAEELGGE NeoR/KanR C G T T G G C T A C C C G T G A T A T T Neo-F DRYQDIALATRDIAEELGGE VAILVYRQSGTINSFLKAAF g a c c g c t a t c a g g a c a t a g c g t t g g c t a c c c g t g a t a t t g c t g a a g a g c t t g g c g g c g a a c t g g c g a t a g t c c t g t a t c g c a a c c g a t g g g c a c t a t a a c g a c t t c t c g a a c c g c c g c t t

5100 240 245 250 255 WADRFLVLYGIAAPDSQRIA NeoR/KanR WADRFLVLYGIAAPDSQRIA PSVAEEHKVTDGSGIRLADG t g g g c t g a c c g c t t c c t c g t g c t t t a c g g t a t c g c c g c t c c c g a t t c g c a g c g c a t c g c c a c c c g a c t g g c g a a g g a g c a c g a a a t g c c a t a g c g g c g a g g g c t a a g c g t c g c g t a g c g g

BstBI 5160 260 265 FYRLLDEFF* NeoR/KanR FYRLLDEFF* EIAKKVLEESRSEPTRFSRG t t c t a t c g c c t t c t t g a c g a g t t c t t c t g a g c g g g a c t c t g g g g t t c g a a a t g a c c g a c c a a g a t a g c g g a a g a a c t g c t c a a g a a g a c t c g c c c t g a g a c c c c a a g c t t t a c t g g c t g g

5220 LSAWGAM a a g c g a c g c c c a a c c t g c c a t c a c g a g a t t t c g a t t c c a c c g c c g c c t t c t a t g a a a g g t t t c g c t g c g g g t t g g a c g g t a g t g c t c t a a a g c t a a g g t g g c g g c g g a a g a t a c t t t c c a

5280 t g g g c t t c g g a a t c g t t t t c c g g g a c g c c g g c t g g a t g a t c c t c c a g c g c g g g g a t c t c a a c c c g a a g c c t t a g c a a a a g g c c c t g c g g c c g a c c t a c t a g g a g g t c g c g c c c c t a g a g t

5340 SV40 poly(A) signal t g c t g g a g t t c t t c g c c c a c c c c a a c t t g t t t a t t g c a g c t t a t a a t g g t t a c a a a t a a a a c g a c c t c a a g a a g c g g g t g g g g t t g a a c a a a t a a c g t c g a a t a t t a c c a a t g t t t a t t t

5400 SV40 poly(A) signal G T G G T T EBV-rev C G T T A T C G T A G T G T T T A A A G SV40pA-R g c a a t a g c a t c a c a a a t t t c a c a a a t a a a g c a t t t t t t t c a c t g c a t t c t a g t t g t g g t t c g t t a t c g t a g t g t t t a a a g t g t t t a t t t c g t a a a a a a a g t g a c g t a a g a t c a a c a c c a a

5460 SV40 poly(A) signal T G T C C A A A C T C A T C EBV-rev t g t c c a a a c t c a t c a a t g t a t c t t a t c a t g t c t g g a t c c g t c g a c c t c g a g a g c t t g g c g a c a g g t t t g a g t a g t t a c a t a g a a t a g t a c a g a c c t a g g c a g c t g g a g c t c t c g a a c c g c

5520 -10 M13 rev lac operator lac promoter C A G T A T C G A C A A A G G A C M13 Reverse G G A C A C A C T T T A A C A A T A G G C G A M13/pUC Reverse t a a t c a t g g t c a t a g c t g t t t c c t g t g t g a a a t t g t t a t c c g c t c a c a a t t c c a c a c a a c a t t a g t a c c a g t a t c g a c a a a g g a c a c a c t t t a a c a a t a g g c g a g t g t t a a g g t g t g t t g

5580 -10 -35 lac promoter CAP binding site a t a c g a g c c g g a a g c a t a a a g t g t a a a g c c t g g g g t g c c t a a t g a g t g a g c t a a c t c a c a t a t g c t c g g c c t t c g t a t t t c a c a t t t c g g a c c c c a c g g a t t a c t c a c t c g a t t g a g t g t

5640 CAP binding site t t a a t t g c g t t g c g c t c a c t g c c c g c t t t c c a g t c g g g a a a c c t g t c g t g c c a g c t g c a t a a t t a a c g c a a c g c g a g t g a c g g g c g a a a g g t c a g c c c t t t g g a c a g c a c g g t c g a c g t a

5700 G L4440 t a a t g a a t c g g c c a a c g c g c g g g g a g a g g c g g t t t g c g t a t t g g g c g c t c t t c c g c t t c c a t t a c t t a g c c g g t t g c g c g c c c c t c t c c g c c a a a c g c a t a a c c c g c g a g a a g g c g a a g g

5760 A G C G A G T G A C T G A G C G A L4440 t c g c t c a c t g a c t c g c t g c g c t c g g t c g t t c g g c t g c g g c g a g c g g t a t c a g c t c a c t c a a g c g a g t g a c t g a g c g a c g c g a g c c a g c a a g c c g a c g c c g c t c g c c a t a g t c g a g t g a g t

5820 a a g g c g g t a a t a c g g t t a t c c a c a g a a t c a g g g g a t a a c g c a g g a a a g a a c a t g t g a g c a t t c c g c c a t t a t g c c a a t a g g t g t c t t a g t c c c c t a t t g c g t c c t t t c t t g t a c a c t c g t

5880 ori a a a g g c c a g c a a a a g g c c a g g a a c c g t a a a a a g g c c g c g t t g c t g g c g t t t t t c c a t a g g t t t c c g g t c g t t t t c c g g t c c t t g g c a t t t t t c c g g c g c a a c g a c c g c a a a a a g g t a t c c

5940 ori c t c c g c c c c c c t g a c g a g c a t c a c a a a a a t c g a c g c t c a a g t c a g a g g t g g c g a a a c c c g g a g g c g g g g g g a c t g c t c g t a g t g t t t t t a g c t g c g a g t t c a g t c t c c a c c g c t t t g g g c

6000 ori T T T C T A T G G T C C G C A A A G G G pBR322ori-F a c a g g a c t a t a a a g a t a c c a g g c g t t t c c c c c t g g a a g c t c c c t c g t g c g c t c t c c t g t t t g t c c t g a t a t t t c t a t g g t c c g c a a a g g g g g a c c t t c g a g g g a g c a c g c g a g a g g a c a a

6060 ori c c g a c c c t g c c g c t t a c c g g a t a c c t g t c c g c c t t t c t c c c t t c g g g a a g c g t g g c g c t t g g c t g g g a c g g c g a a t g g c c t a t g g a c a g g c g g a a a g a g g g a a g c c c t t c g c a c c g c g a a

6120 ori t c t c a t a g c t c a c g c t g t a g g t a t c t c a g t t c g g t g t a g g t c g t t c g c t c c a a g c t g g g c a g a g t a t c g a g t g c g a c a t c c a t a g a g t c a a g c c a c a t c c a g c a a g c g a g g t t c g a c c c g

6180 ori t g t g t g c a c g a a c c c c c c g t t c a g c c c g a c c g c t g c g c c t t a t c c g g t a a c t a t c g t c t t a c a c a c g t g c t t g g g g g g c a a g t c g g g c t g g c g a c g c g g a a t a g g c c a t t g a t a g c a g a a

6240 ori g a g t c c a a c c c g g t a a g a c a c g a c t t a t c g c c a c t g g c a g c a g c c a c t g g t a a c a g g a t t c t c a g g t t g g g c c a t t c t g t g c t g a a t a g c g g t g a c c g t c g t c g g t g a c c a t t g t c c t a a

6300 ori a g c a g a g c g a g g t a t g t a g g c g g t g c t a c a g a g t t c t t g a a g t g g t g g c c t a a c t a c g g c t c g t c t c g c t c c a t a c a t c c g c c a c g a t g t c t c a a g a a c t t c a c c a c c g g a t t g a t g c c g

6360 ori t a c a c t a g a a g a a c a g t a t t t g g t a t c t g c g c t c t g c t g a a g c c a g t t a c c t t c g g a a a a a t g t g a t c t t c t t g t c a t a a a c c a t a g a c g c g a g a c g a c t t c g g t c a a t g g a a g c c t t t t

6420 ori a g a g t t g g t a g c t c t t g a t c c g g c a a a c a a a c c a c c g c t g g t a g c g g t g g t t t t t t t g t t t c t c a a c c a t c g a g a a c t a g g c c g t t t g t t t g g t g g c g a c c a t c g c c a c c a a a a a a a c a a

6480 ori t g c a a g c a g c a g a t t a c g c g c a g a a a a a a a g g a t c t c a a g a a g a t c c t t t g a t c t t t t c t a c g t t c g t c g t c t a a t g c g c g t c t t t t t t t c c t a g a g t t c t t c t a g g a a a c t a g a a a a g a

6540 a c g g g g t c t g a c g c t c a g t g g a a c g a a a a c t c a c g t t a a g g g a t t t t g g t c a t g a g a t t a t g c c c c a g a c t g c g a g t c a c c t t g c t t t t g a g t g c a a t t c c c t a a a a c c a g t a c t c t a a t

6600 t c a a a a a g g a t c t t c a c c t a g a t c c t t t t a a a t t a a a a a t g a a g t t t t a a a t c a a t c t a a a g t t t t t c c t a g a a g t g g a t c t a g g a a a a t t t a a t t t t t a c t t c a a a a t t t a g t t a g a t t

6660 285 280 *WHKILSAGI AmpR *WHKILSAGI a g t a t a t a t g a g t a a a c t t g g t c t g a c a g t t a c c a a t g c t t a a t c a g t g a g g c a c c t a t c t c a t a t a t a c t c a t t t g a a c c a g a c t g t c a a t g g t t a c g a a t t a g t c a c t c c g t g g a t a g

6720 275 270 265 260 EAIQRNREDMTAQSGTTYIV AmpR EAIQRNREDMTAQSGTTYIV t c a g c g a t c t g t c t a t t t c g t t c a t c c a t a g t t g c c t g a c t c c c c g t c g t g t a g a t a a c t a g t c g c t a g a c a g a t a a a g c a a g t a g g t a t c a a c g g a c t g a g g g g c a g c a c a t c t a t t g a

6780 255 250 245 240 VIRSPKGDPGLAAIIGRSGR AmpR VIRSPKGDPGLAAIIGRSGR a c g a t a c g g g a g g g c t t a c c a t c t g g c c c c a g t g c t g c a a t g a t a c c g c g a g a c c c a c g c t g c t a t g c c c t c c c g a a t g g t a g a c c g g g g t c a c g a c g t t a c t a t g g c g c t c t g g g t g c g

6840 235 230 225 220 EGAGSKDAIFWGAPLASRLL AmpR EGAGSKDAIFWGAPLASRLL t c a c c g g c t c c a g a t t t a t c a g c a a t a a a c c a g c c a g c c g g a a g g g c c g a g c g c a g a a g t a g t g g c c g a g g t c t a a a t a g t c g t t a t t t g g t c g g t c g g c c t t c c c g g c t c g c g t c t t c a

6900 215 210 205 200 PGAVKDAEMWDILQQRSALT AmpR PGAVKDAEMWDILQQRSALT g g t c c t g c a a c t t t a t c c g c c t c c a t c c a g t c t a t t a a t t g t t g c c g g g a a g c t a g a g t a c c a g g a c g t t g a a a t a g g c g g a g g t a g g t c a g a t a a t t a a c a a c g g c c c t t c g a t c t c a t

6960 195 190 185 180 LLEGTLLKRLTTAMAVPMTT AmpR LLEGTLLKRLTTAMAVPMTT a g t a g t t c g c c a g t t a a t a g t t t g c g c a a c g t t g t t g c c a t t g c t a c a g g c a t c g t g g t g t c a t c a a g c g g t c a a t t a t c a a a c g c g t t g c a a c a a c g g t a a c g a t g t c c g t a g c a c c a c

7020 175 170 165 160 DREDNPIAENLEPEWRDLRT AmpR DREDNPIAENLEPEWRDLRT t c a c g c t c g t c g t t t g g t a t g g c t t c a t t c a g c t c c g g t t c c c a a c g a t c a a g g c g a g t t a g t g c g a g c a g c a a a c c a t a c c g a a g t a a g t c g a g g c c a a g g g t t g c t a g t t c c g c t c a a

PvuI 7080 155 150 145 140 VHDGMNHLFATLEKPGGITT AmpR VHDGMNHLFATLEKPGGITT a c a t g a t c c c c c a t g t t g t g c a a a a a a g c g g t t a g c t c c t t c g g t c c t c c g a t c g t t g t c t g t a c t a g g g g g t a c a a c a c g t t t t t t c g c c a a t c g a g g a a g c c a g g a g g c t a g c a a c a g

7140 135 130 125 120 LLLNAATNDSMTIAASCLER AmpR LLLNAATNDSMTIAASCLER a g a a g t a a g t t g g c c g c a g t g t t a t c a c t c a t g g t t a t g g c a g c a c t g c a t a a t t c t c t t t c t t c a t t c a a c c g g c g t c a c a a t a g t g a g t a c c a a t a c c g t c g t g a c g t a t t a a g a g a a

7200 115 110 105 100 VTMGDTLHKETVPSYEVLDN AmpR VTMGDTLHKETVPSYEVLDN a c t g t c a t g c c a t c c g t a a g a t g c t t t t c t g t g a c t g g t g a g t a c t c a a c c a a g t c a t t c t g a c a g t a c g g t a g g c a t t c t a c g a a a a g a c a c t g a c c a c t c a t g a g t t g g t t c a g t a a g

7260 95 90 85 80 QSYHIRRGLQEQGADIRSLV AmpR A T A A T A C C Amp-R QSYHIRRGLQEQGADIRSLV t g a g a a t a g t g t a t g c g g c g a c c g a g t t g c t c t t g c c c g g c g t c a a t a c g g g a t a a t a c c a c t c t t a t c a c a t a c g c c g c t g g c t c a a c g a g a a c g g g c c g c a g t t a t g c c c t a t t a t g g

7320 75 70 65 60 AGCLLVKFTSMMPFREEPRF AmpR G C G C C A C A T A G C Amp-R AGCLLVKFTSMMPFREEPRF g c g c c a c a t a g c a g a a c t t t a a a a g t g c t c a t c a t t g g a a a a c g t t c t t c g g g g c g a a a a c g c g g t g t a t c g t c t t g a a a t t t t c a c g a g t a g t a a c c t t t t g c a a g a a g c c c c g c t t t t

7380 55 50 45 40 SELIKGSNLDLEIYGVRAGL AmpR SELIKGSNLDLEIYGVRAGL c t c t c a a g g a t c t t a c c g c t g t t g a g a t c c a g t t c g a t g t a a c c c a c t c g t g c a c c c a a c g a g a g t t c c t a g a a t g g c g a c a a c t c t a g g t c a a g c t a c a t t g g g t g a g c a c g t g g g t t g

7440 35 30 25 QDEADKVKVLTEPH 20 signal sequence AFVPLC AmpR QDEADKVKVLTEPHAFVPLC t g a t c t t c a g c a t c t t t t a c t t t c a c c a g c g t t t c t g g g t g a g c a a a a a c a g g a a g g c a a a c t a g a a g t c g t a g a a a a t g a a a g t g g t c g c a a a g a c c c a c t c g t t t t t g t c c t t c c g t t

7500 15 10 5 1 signal sequence FAAFFPILAVRFHQISM AmpR AmpR promoter FAAFFPILAVRFHQISM a a t g c c g c a a a a a a g g g a a t a a g g g c g a c a c g g a a a t g t t g a a t a c t c a t a c t c t t c c t t t t a c g g c g t t t t t t c c c t t a t t c c c g c t g t g c c t t t a c a a c t t a t g a g t a t g a g a a g g a a

7560 AmpR promoter t t t c a a t a t t a t t g a a g c a t t t a t c a g g g t t a t t g t c t c a t g a g c g g a t a c a t a t t t g a a a a a g t t a t a a t a a c t t c g t a a a t a g t c c c a a t a a c a g a g t a c t c g c c t a t g t a t a a a c t t

7620 AmpR promoter t g t a t t t a g a a a a a t a a a c a a a t a g g g g t t c c g c g c a c a t t t c c c c g a a a a g t g c c a c c t a c a t a a a t c t t t t t a t t t g t t t a t c c c c a a g g c g c g t g t a a a g g g g c t t t t c a c g g t g g a

BglIISgrDI 7680 A T G T T A G A C G A pRS-marker g a c g t c g a c g g a t c g g g a g a t c t c c c g a t c c c c t a t g g t g c a c t c t c a g t a c a a t c t g c t c t g c a g c t g c c t a g c c c t c t a g a g g g c t a g g g g a t a c c a c g t g a g a g t c a t g t t a g a c g a

7740 G A C T A C G G C pRS-marker c t g a t g c c g c a t a g t t a a g c c a g t a t c t g c t c c c t g c t t g t g t g t t g g a g g t c g c t g a g t g a c t a c g g c g t a t c a a t t c g g t c a t a g a c g a g g g a c g a a c a c a c a a c c t c c a g c g a c t c a

7800 a g t g c g c g a g c a a a a t t t a a g c t a c a a c a a g g c a a g g c t t g a c c g a c a a t t g c a t g a a g a t c a c g c g c t c g t t t t a a a t t c g a t g t t g t t c c g t t c c g a a c t g g c t g t t a a c g t a c t t c t

NruI 3ʹ 5ʹ 7854 a t c t g c t t a g g g t t a g g c g t t t t g c g c t g c t t c g c g a t g t a c g g g c c a g a t a t a t a g a c g a a t c c c a a t c c g c a a a a c g c g a c g a a g c g c t a c a t g c c c g g t c t a t a t

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.