Addgene pDONR221_SLC25A21 Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: pDONR221_SLC25A21 Sequencing Result


Map View

PciI (3441) DrdI (3339) pBR322ori-F (3286 .. 3305) BssSI - BssSαI (3268) BciVI (3243) BsiHKAI (3131) ApaLI (3127) AcuI (2899) Bpu10I (2283) BsmBI - Esp3I (2282) AsiSI - PvuI (2266) BsrFI (2220) SspI (2191) Kan-R (1908 .. 1927) NruI (1923) pENTR-R (1830 .. 1849) M13 Reverse (1712 .. 1728) L4440 (92 .. 109) BspQI - SapI (111) rrnB T2 terminator BsaHI (327) AclI (364) BbsI (437) HincII - HpaI (501) M13/pUC Forward (522 .. 544) M13 Forward (536 .. 553) AhdI (549) AflII (554) AvaI - BsoBI (560) PspOMI (563) ApaI (567) StuI (710) XbaI (713) BglII (753) CsiI - SexAI * (788) BglI (882) BsaI (914) BsaAI (982) XcmI (1018) XmnI (1058) SbfI (1086) DraIII (1213) PshAI (1318) BclI * (1341) BsaBI * (1346) BamHI (1374) BtgI - NcoI - StyI (1431) AccI (1541) BstZ17I (1542) KflI (1570) EcoRV (1684) T7 (1688 .. 1707) pDONR221_SLC25A21 3447 bp

Sequence View

60 c t t t c c t g c g t t a t c c c c t g a t t c t g t g g a t a a c c g t a t t a c c g c c t t t g a g t g a g c t g a g a a a g g a c g c a a t a g g g g a c t a a g a c a c c t a t t g g c a t a a t g g c g g a a a c t c a c t c g a c t

BspQISapI 120 A G C G A G T C A G T G A G C G A G L4440 t a c c g c t c g c c g c a g c c g a a c g a c c g a g c g c a g c g a g t c a g t g a g c g a g g a a g c g g a a g a a t g g c g a g c g g c g t c g g c t t g c t g g c t c g c g t c g c t c a g t c a c t c g c t c c t t c g c c t t c t

180 g c g c c c a a t a c g c a a a c c g c c t c t c c c c g c g c g t t g g c c g a t t c a t t a a t g c a g c t g g c a c g c g g g t t a t g c g t t t g g c g g a g a g g g g c g c g c a a c c g g c t a a g t a a t t a c g t c g a c c g t

240 c g a c a g g t t t c c c g a c t g g a a a g c g g g c a g t g a g c g c a a c g c a a t t a a t a c g c g t a c c g c g c t g t c c a a a g g g c t g a c c t t t c g c c c g t c a c t c g c g t t g c g t t a a t t a t g c g c a t g g c g

300 rrnB T2 terminator t a g c c a g g a a g a g t t t g t a g a a a c g c a a a a a g g c c a t c c g t c a g g a t g g c c t t c t g c t t a a t c g g t c c t t c t c a a a c a t c t t t g c g t t t t t c c g g t a g g c a g t c c t a c c g g a a g a c g a a t

BsaHI 360 g t t t g a t g c c t g g c a g t t t a t g g c g g g c g t c c t g c c c g c c a c c c t c c g g g c c g t t g c t t c c a a a c t a c g g a c c g t c a a a t a c c g c c c g c a g g a c g g g c g g t g g g a g g c c c g g c a a c g a a g

AclI 420 rrnB T1 terminator a c a a c g t t c a a a t c c g c t c c c g g c g g a t t t g t c c t a c t c a g g a g a g c g t t c a c c g a c a a a t g t t g c a a g t t t a g g c g a g g g c c g c c t a a a c a g g a t g a g t c c t c t c g c a a g t g g c t g t t t

BbsI 480 rrnB T1 terminator c a a c a g a t a a a a c g a a a g g c c c a g t c t t c c g a c t g a g c c t t t c g t t t t a t t t g a t g c c t g g t t g t c t a t t t t g c t t t c c g g g t c a g a a g g c t g a c t c g g a a a g c a a a a t a a a c t a c g g a c

HincIIHpaI 540 M13 fwd C C C A G T C A C G A C G T T G T A A M13/pUC Forward T G T A A M13 Forward g c a g t t c c c t a c t c t c g c g t t a a c g c t a g c a t g g a t g t t t t c c c a g t c a c g a c g t t g t a a c g t c a a g g g a t g a g a g c g c a a t t g c g a t c g t a c c t a c a a a a g g g t c a g t g c t g c a a c a t t

AhdIAflIIBsoBIAvaIPspOMIApaI 600 M13 fwd attL1 A A C G M13/pUC Forward A A C G A C G G C C A G T M13 Forward *KSQYHG a a c g a c g g c c a g t c t t a a g c t c g g g c c c c a a a t a a t g a t t t t a t t t t g a c t g a t a g t g a c t t g c t g c c g g t c a g a a t t c g a g c c c g g g g t t t a t t a c t a a a a t a a a a c t g a c t a t c a c t g

660 attL1 MPTLYKK TRQLVNILLAKKYHWSQVFF c t g t t c g t t g c a a c a c a t t g a t g a g c a a t g c t t t t t t a t a a t g c c a a c t t t g t a c a a a a a g a c a a g c a a c g t t g t g t a a c t a c t c g t t a c g a a a a a a t a t t a c g g t t g a a a c a t g t t t t t

StuIXbaI 720 attL1 AGSTMSAKPEVSLVREASRQ CAGGHAGLWLHGQHPLGRSL a g c a g g c t c c a c c a t g a g c g c c a a g c c a g a g g t g t c c c t g g t g c g g g a g g c c t c t a g a c a t c g t c c g a g g t g g t a c t c g c g g t t c g g t c t c c a c a g g g a c c a c g c c c t c c g g a g a t c t g t

BglII 780 IVAGGSAGLVEICLMHPLDV DHCSSRGSQHLDAKHVRQID g a t c g t g g c a g g a g g a t c t g c c g g a c t g g t g g a g a t c t g c c t t a t g c a c c c g t t g g a t g t c t a g c a c c g t c c t c c t a g a c g g c c t g a c c a c c t c t a g a c g g a a t a c g t g g g c a a c c t a c a

SexAI*CsiI 840 VKTRFQIQRCATDPNSYKSL YLGPELDLPAGCVRVRILAQ c g t a a a g a c c a g g t t c c a g a t c c a g c g g t g c g c c a c a g a c c c t a a c t c t t a t a a g a g c c t g c a t t t c t g g t c c a a g g t c t a g g t c g c c a c g c g g t g t c t g g g a t t g a g a a t a t t c t c g g a

BglI 900 VDSFRMIFQMEGLFGFYKGI HIAEPHDKLHLAQEAKVLAD g g t g g a t a g c t t c c g g a t g a t c t t t c a g a t g g a g g g c c t g t t c g g c t t t t a c a a g g g c a t c c a c c t a t c g a a g g c c t a c t a g a a a g t c t a c c t c c c g g a c a a g c c g a a a a t g t t c c c g t a

BsaI 960 LPPILAETPKRAVKFFTFEQ QGRDQGLGRLSGHLEKCELL c c t g c c c c c t a t c c t g g c c g a g a c c c c t a a g a g a g c c g t g a a g t t c t t t a c a t t c g a g c a g g a c g g g g g a t a g g a c c g g c t c t g g g g a t t c t c t c g g c a c t t c a a g a a a t g t a a g c t c g t

XcmIBsaAI 1020 YKKLLGYVSLSPALTFAIAG ILLQQAVHAQGWGQGKGDCS g t a t a a g a a g c t g c t g g g c t a c g t g a g c c t g t c c c c a g c c c t g a c c t t t g c c a t c g c a g g c a t a t t c t t c g a c g a c c c g a t g c a c t c g g a c a g g g g t c g g g a c t g g a a a c g g t a g c g t c c

XmnI 1080 LGSGLTEAIVVNPFEVVKVG QSASQCLGDHHIWELHHFHA a c t g g g a a g c g g a c t g a c a g a g g c c a t c g t g g t g a a t c c a t t c g a g g t g g t g a a a g t g g g t g a c c c t t c g c c t g a c t g t c t c c g g t a g c a c c a c t t a g g t a a g c t c c a c c a c t t t c a c c c

SbfI 1140 LQANRNTFAEQPSTVGYARQ QLGVPIGKGLLGGCHAIGSL c c t g c a g g c c a a c c g g a a t a c c t t t g c c g a g c a g c c c t c c a c a g t g g g c t a t g c c a g a c a g g a c g t c c g g t t g g c c t t a t g g a a a c g g c t c g t c g g g a g g t g t c a c c c g a t a c g g t c t g t

1200 IIKKEGWGLQGLNKGLTATL DDLLLSPSQLAQVLSQGGCQ g a t c a t c a a g a a g g a g g g a t g g g g a c t g c a g g g c c t g a a c a a g g g a c t g a c c g c c a c a c t c t a g t a g t t c t t c c t c c c t a c c c c t g a c g t c c c g g a c t t g t t c c c t g a c t g g c g g t g t g a

DraIII 1260 GRHGVFNMVYFGFYYNVKNM APVAHKIHHVEAKVIVHLIH g g g c a g g c a c g g c g t g t t t a a t a t g g t g t a c t t c g g c t t t t a c t a t a a c g t g a a g a a t a t c c c g t c c g t g c c g c a c a a a t t a t a c c a c a t g a a g c c g a a a a t g a t a t t g c a c t t c t t a t a

PshAI 1320 IPVNKDPILEFWRKFGIGLL DWHVLVGDQLEPALKSDSQQ g a t c c c a g t g a a c a a g g a c c c c a t c c t g g a g t t c t g g c g c a a g t t t g g a a t c g g a c t g c t c t a g g g t c a c t t g t t c c t g g g g t a g g a c c t c a a g a c c g c g t t c a a a c c t t a g c c t g a c g a

BamHIBsaBI*BclI* 1380 SGTIASVINIPFDVAKSRIQ GSGDCRHDIDREIHGLGPDL g t c c g g a a c c a t c g c a t c t g t g a t c a a t a t c c c t t t c g a t g t g g c c a a g t c c a g g a t c c a c a g g c c t t g g t a g c g t a g a c a c t a g t t a t a g g g a a a g c t a c a c c g g t t c a g g t c c t a g g t

NcoIStyIBtgI 1440 GPQPVPGEIKYRTCFKTMAT SWLWHRSLDLIACAKLGHGC g g g a c c a c a g c c a g t g c c t g g a g a g a t c a a g t a t c g c a c a t g c t t t a a g a c c a t g g c c a c c c c t g g t g t c g g t c a c g g a c c t c t c t a g t t c a t a g c g t g t a c g a a a t t c t g g t a c c g g t g

1500 VYQEEGILALYKGLLPKIMR HILLLADQGQVLAQQRLDHP a g t g t a t c a g g a g g a g g g c a t c c t g g c c c t g t a c a a g g g c c t g c t g c c t a a g a t c a t g a g t c a c a t a g t c c t c c t c c c g t a g g a c c g g g a c a t g t t c c c g g a c g a c g g a t t c t a g t a c t c

AccIBstZ17I 1560 LGPGGAVMLLVYEYTYSWLQ QSWSSGHHQQHVLIGVRPQL g c t g g g a c c a g g a g g a g c c g t g a t g c t g c t g g t g t a c g a g t a t a c c t a c t c t t g g c t g c a c g a c c c t g g t c c t c c t c g g c a c t a c g a c g a c c a c a t g c t c a t a t g g a t g a g a a c c g a c g t

KflI 1620 attL2 ENWDPAFLYKVGIIRKHCLS LVPVWSEQVFNANYSLM g g a g a a c t g g g a c c c a g c t t t c t t g t a c a a a g t t g g c a t t a t a a g a a a g c a t t g c t t a t c c c t c t t g a c c c t g g g t c g a a a g a a c a t g t t t c a a c c g t a a t a t t c t t t c g t a a c g a a t a g

1680 attL2 ICCNEQVTISQNKIIICHPA a a t t t g t t g c a a c g a a c a g g t c a c t a t c a g t c a a a a t a a a a t c a t t a t t t g c c a t c c a g c t t a a a c a a c g t t g c t t g t c c a g t g a t a g t c a g t t t t a t t t t a g t a a t a a a c g g t a g g t c g

EcoRV 1740 T7 promoter M13 rev G G G A T A T C A C T C A G C A T A A T T7 C A G T A T C G A C A A A G G A C M13 Reverse DIPYSESYYMVIAVSWQLWP t g a t a t c c c c t a t a g t g a g t c g t a t t a c a t g g t c a t a g c t g t t t c c t g g c a g c t c t g g c c a c t a t a g g g g a t a t c a c t c a g c a t a a t g t a c c a g t a t c g a c a a a g g a c c g t c g a g a c c g g

1800 VSQNL* c g t g t c t c a a a a t c t c t g a t g t t a c a t t g c a c a a g a t a a a a a t a t a t c a t c a t g a a c a a t g c a c a g a g t t t t a g a g a c t a c a a t g t a a c g t g t t c t a t t t t t a t a t a g t a g t a c t t g t t a

1860 1 5 MSHIQRE KanR G T T C C C C A C A A T A C T C G G T A pENTR-R MSHIQRE a a a a c t g t c t g c t t a c a t a a a c a g t a a t a c a a g g g g t g t t a t g a g c c a t a t t c a a c g g g a t t t t g a c a g a c g a a t g t a t t t g t c a t t a t g t t c c c c a c a a t a c t c g g t a t a a g t t g c c c t

1920 10 15 20 25 TSRPRLNSNMDADLYGYKWA KanR C C A T A T T T A C C C G Kan-R TSRPRLNSNMDADLYGYKWA a a c g t c g a g g c c g c g a t t a a a t t c c a a c a t g g a t g c t g a t t t a t a t g g g t a t a a a t g g g c t t g c a g c t c c g g c g c t a a t t t a a g g t t g t a c c t a c g a c t a a a t a t a c c c a t a t t t a c c c g

NruI 1980 30 35 40 45 RDNVGQSGATIYRLYGKPDA KanR A G C G C T A Kan-R RDNVGQSGATIYRLYGKPDA t c g c g a t a a t g t c g g g c a a t c a g g t g c g a c a a t c t a t c g c t t g t a t g g g a a g c c c g a t g c a g c g c t a t t a c a g c c c g t t a g t c c a c g c t g t t a g a t a g c g a a c a t a c c c t t c g g g c t a c g

2040 50 55 60 65 PELFLKHGKGSVANDVTDEM KanR PELFLKHGKGSVANDVTDEM g c c a g a g t t g t t t c t g a a a c a t g g c a a a g g t a g c g t t g c c a a t g a t g t t a c a g a t g a g a t c g g t c t c a a c a a a g a c t t t g t a c c g t t t c c a t c g c a a c g g t t a c t a c a a t g t c t a c t c t a

2100 70 75 80 85 VRLNWLTEFMPLPTIKHFIR KanR VRLNWLTEFMPLPTIKHFIR g g t c a g a c t a a a c t g g c t g a c g g a a t t t a t g c c t c t t c c g a c c a t c a a g c a t t t t a t c c g c c a g t c t g a t t t g a c c g a c t g c c t t a a a t a c g g a g a a g g c t g g t a g t t c g t a a a a t a g g c

2160 90 95 100 105 TPDDAWLLTTAIPGKTAFQV KanR TPDDAWLLTTAIPGKTAFQV t a c t c c t g a t g a t g c a t g g t t a c t c a c c a c t g c g a t c c c c g g a a a a a c a g c a t t c c a g g t a t g a g g a c t a c t a c g t a c c a a t g a g t g g t g a c g c t a g g g g c c t t t t t g t c g t a a g g t c c a

SspI 2220 110 115 120 125 LEEYPDSGENIVDALAVFLR KanR LEEYPDSGENIVDALAVFLR a t t a g a a g a a t a t c c t g a t t c a g g t g a a a a t a t t g t t g a t g c g c t g g c a g t g t t c c t g c g t a a t c t t c t t a t a g g a c t a a g t c c a c t t t t a t a a c a a c t a c g c g a c c g t c a c a a g g a c g c

AsiSIPvuIBsrFI 2280 130 135 140 145 RLHSIPVCNCPFNSDRVFRL KanR RLHSIPVCNCPFNSDRVFRL c c g g t t g c a t t c g a t t c c t g t t t g t a a t t g t c c t t t t a a c a g c g a t c g c g t a t t t c g t c t g g c c a a c g t a a g c t a a g g a c a a a c a t t a a c a g g a a a a t t g t c g c t a g c g c a t a a a g c a g a

BsmBIEsp3IBpu10I 2340 150 155 160 165 AQAQSRMNNGLVDASDFDDE KanR AQAQSRMNNGLVDASDFDDE c g c t c a g g c g c a a t c a c g a a t g a a t a a c g g t t t g g t t g a t g c g a g t g a t t t t g a t g a c g a g c g a g t c c g c g t t a g t g c t t a c t t a t t g c c a a a c c a a c t a c g c t c a c t a a a a c t a c t g c t

2400 170 175 180 185 RNGWPVEQVWKEMHKLLPFS KanR RNGWPVEQVWKEMHKLLPFS g c g t a a t g g c t g g c c t g t t g a a c a a g t c t g g a a a g a a a t g c a t a a a c t t t t g c c a t t c t c c g c a t t a c c g a c c g g a c a a c t t g t t c a g a c c t t t c t t t a c g t a t t t g a a a a c g g t a a g a g

2460 190 195 200 205 PDSVVTHGDFSLDNLIFDEG KanR PDSVVTHGDFSLDNLIFDEG a c c g g a t t c a g t c g t c a c t c a t g g t g a t t t c t c a c t t g a t a a c c t t a t t t t t g a c g a g g g t g g c c t a a g t c a g c a g t g a g t a c c a c t a a a g a g t g a a c t a t t g g a a t a a a a a c t g c t c c c

2520 210 215 220 225 KLIGCIDVGRVGIADRYQDL KanR KLIGCIDVGRVGIADRYQDL g a a a t t a a t a g g t t g t a t t g a t g t t g g a c g a g t c g g a a t c g c a g a c c g a t a c c a g g a t c t c t t t a a t t a t c c a a c a t a a c t a c a a c c t g c t c a g c c t t a g c g t c t g g c t a t g g t c c t a g a

2580 230 235 240 245 AILWNCLGEFSPSLQKRLFQ KanR AILWNCLGEFSPSLQKRLFQ t g c c a t c c t a t g g a a c t g c c t c g g t g a g t t t t c t c c t t c a t t a c a g a a a c g g c t t t t t c a a c g g t a g g a t a c c t t g a c g g a g c c a c t c a a a a g a g g a a g t a a t g t c t t t g c c g a a a a a g t

2640 250 255 260 265 KYGIDNPDMNKLQFHLMLDE KanR KYGIDNPDMNKLQFHLMLDE a a a a t a t g g t a t t g a t a a t c c t g a t a t g a a t a a a t t g c a g t t t c a t t t g a t g c t c g a t g a t t t t a t a c c a t a a c t a t t a g g a c t a t a c t t a t t t a a c g t c a a a g t a a a c t a c g a g c t a c t

2700 270 FF* KanR FF* g t t t t t c t a a t c a g a a t t g g t t a a t t g g t t g t a a c a c t g g c a g a g c a t t a c g c t g a c t t g c a a a a a g a t t a g t c t t a a c c a a t t a a c c a a c a t t g t g a c c g t c t c g t a a t g c g a c t g a a c

2760 a c g g g a c g g c g c a a g c t c a t g a c c a a a a t c c c t t a a c g t g a g t t a c g c g t c g t t c c a c t g t g c c c t g c c g c g t t c g a g t a c t g g t t t t a g g g a a t t g c a c t c a a t g c g c a g c a a g g t g a c

2820 ori a g c g t c a g a c c c c g t a g a a a a g a t c a a a g g a t c t t c t t g a g a t c c t t t t t t t c t g c g c g t t c g c a g t c t g g g g c a t c t t t t c t a g t t t c c t a g a a g a a c t c t a g g a a a a a a a g a c g c g c a

2880 ori a a t c t g c t g c t t g c a a a c a a a a a a a c c a c c g c t a c c a g c g g t g g t t t g t t t g c c g g a t c a t t a g a c g a c g a a c g t t t g t t t t t t t g g t g g c g a t g g t c g c c a c c a a a c a a a c g g c c t a g t

AcuI 2940 ori a g a g c t a c c a a c t c t t t t t c c g a a g g t a a c t g g c t t c a g c a g a g c g c a g a t a c c a a a t a c t c t c g a t g g t t g a g a a a a a g g c t t c c a t t g a c c g a a g t c g t c t c g c g t c t a t g g t t t a t g

3000 ori t g t t c t t c t a g t g t a g c c g t a g t t a g g c c a c c a c t t c a a g a a c t c t g t a g c a c c g c c t a c a c a a g a a g a t c a c a t c g g c a t c a a t c c g g t g g t g a a g t t c t t g a g a c a t c g t g g c g g a t g

3060 ori a t a c c t c g c t c t g c t a a t c c t g t t a c c a g t g g c t g c t g c c a g t g g c g a t a a g t c g t g t c t t a t g g a g c g a g a c g a t t a g g a c a a t g g t c a c c g a c g a c g g t c a c c g c t a t t c a g c a c a g a

3120 ori t a c c g g g t t g g a c t c a a g a c g a t a g t t a c c g g a t a a g g c g c a g c g g t c g g g c t g a a c g g g a t g g c c c a a c c t g a g t t c t g c t a t c a a t g g c c t a t t c c g c g t c g c c a g c c c g a c t t g c c c

ApaLIBsiHKAI 3180 ori g g g t t c g t g c a c a c a g c c c a g c t t g g a g c g a a c g a c c t a c a c c g a a c t g a g a t a c c t a c a c c c a a g c a c g t g t g t c g g g t c g a a c c t c g c t t g c t g g a t g t g g c t t g a c t c t a t g g a t g t

3240 ori g c g t g a g c t a t g a g a a a g c g c c a c g c t t c c c g a a g g g a g a a a g g c g g a c a g g t a t c c g g t c g c a c t c g a t a c t c t t t c g c g g t g c g a a g g g c t t c c c t c t t t c c g c c t g t c c a t a g g c c a

BssSαIBssSIBciVI 3300 ori G G G A A A C G C C T G G T A pBR322ori-F a a g c g g c a g g g t c g g a a c a g g a g a g c g c a c g a g g g a g c t t c c a g g g g g a a a c g c c t g g t a t t c g c c g t c c c a g c c t t g t c c t c t c g c g t g c t c c c t c g a a g g t c c c c c t t t g c g g a c c a t

DrdI 3360 ori T C T T T pBR322ori-F t c t t t a t a g t c c t g t c g g g t t t c g c c a c c t c t g a c t t g a g c g t c g a t t t t t g t g a t g c t c a g a a a t a t c a g g a c a g c c c a a a g c g g t g g a g a c t g a a c t c g c a g c t a a a a a c a c t a c g a g

3420 ori g t c a g g g g g g c g g a g c c t a t g g a a a a a c g c c a g c a a c g c g g c c t t t t t a c g g t t c c t g g c c a g t c c c c c c g c c t c g g a t a c c t t t t t g c g g t c g t t g c g c c g g a a a a a t g c c a a g g a c c g

PciI 3447 c t t t t g c t g g c c t t t t g c t c a c a t g t t g a a a a c g a c c g g a a a a c g a g t g t a c a a

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.