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Sequence Analyzer: pGAPZ-STE2-1D4


Map View

PciI (3747) MluI (3658) BsrGI (3651) AclI (3617) CYC1 (3502 .. 3520) StuI * (3450) KflI (3442) DraIII (3399) BglI (3351) FseI (3322) CsiI - SexAI * (3209) SgrAI (3160) SmaI (3136) TspMI - XmaI (3134) BssHII - MauBI (3082) MscI (3049) NcoI (3044) AseI (2988) BtgZI (2620) BamHI (2561) BclI * (2428) BsiWI (2412) AgeI (2280) NotI - SacII (2141) PluTI (2134) SfoI (2132) NarI (2131) KasI (2130) BstXI (2127) BspDI - ClaI (1963) pBR322ori-F (96 .. 115) BssSI - BssSαI (128) BciVI (158) AlwNI (371) BglII (689) TsoI (749) BfuAI - BspMI (784) AvrII (878) BsrDI (934) BspQI - SapI (939) PasI (989) BspHI (1043) MfeI (1157) BstBI (1173) EcoRI (1183) HpaI (1323) ScaI (1329) AfeI (1740) PsiI (1766) pGAPZ-STE2-1D4 3792 bp

Sequence View

60 ori c g c g t t g c t g g c g t t t t t c c a t a g g c t c c g c c c c c c t g a c g a g c a t c a c a a a a a t c g a c g g c g c a a c g a c c g c a a a a a g g t a t c c g a g g c g g g g g g a c t g c t c g t a g t g t t t t t a g c t g c

120 ori T T T C T A T G G T C C G C A A A G G G pBR322ori-F c t c a a g t c a g a g g t g g c g a a a c c c g a c a g g a c t a t a a a g a t a c c a g g c g t t t c c c c c t g g g a g t t c a g t c t c c a c c g c t t t g g g c t g t c c t g a t a t t t c t a t g g t c c g c a a a g g g g g a c c

BciVIBssSαIBssSI 180 ori a a g c t c c c t c g t g c g c t c t c c t g t t c c g a c c c t g c c g c t t a c c g g a t a c c t g t c c g c c t t t t c g a g g g a g c a c g c g a g a g g a c a a g g c t g g g a c g g c g a a t g g c c t a t g g a c a g g c g g a a

240 ori t c t c c c t t c g g g a a g c g t g g c g c t t t c t c a a t g c t c a c g c t g t a g g t a t c t c a g t t c g g t a g a g g g a a g c c c t t c g c a c c g c g a a a g a g t t a c g a g t g c g a c a t c c a t a g a g t c a a g c c a

300 ori g t a g g t c g t t c g c t c c a a g c t g g g c t g t g t g c a c g a a c c c c c c g t t c a g c c c g a c c g c t g c a t c c a g c a a g c g a g g t t c g a c c c g a c a c a c g t g c t t g g g g g g c a a g t c g g g c t g g c g a c

360 ori c g c c t t a t c c g g t a a c t a t c g t c t t g a g t c c a a c c c g g t a a g a c a c g a c t t a t c g c c a c t g c g g a a t a g g c c a t t g a t a g c a g a a c t c a g g t t g g g c c a t t c t g t g c t g a a t a g c g g t g a

AlwNI 420 ori g g c a g c a g c c a c t g g t a a c a g g a t t a g c a g a g c g a g g t a t g t a g g c g g t g c t a c a g a g t t c c g t c g t c g g t g a c c a t t g t c c t a a t c g t c t c g c t c c a t a c a t c c g c c a c g a t g t c t c a a

480 ori c t t g a a g t g g t g g c c t a a c t a c g g c t a c a c t a g a a g g a c a g t a t t t g g t a t c t g c g c t c t g a a c t t c a c c a c c g g a t t g a t g c c g a t g t g a t c t t c c t g t c a t a a a c c a t a g a c g c g a g a

540 ori g c t g a a g c c a g t t a c c t t c g g a a a a a g a g t t g g t a g c t c t t g a t c c g g c a a a c a a a c c a c c g a c t t c g g t c a a t g g a a g c c t t t t t c t c a a c c a t c g a g a a c t a g g c c g t t t g t t t g g t g

600 ori c g c t g g t a g c g g t g g t t t t t t t g t t t g c a a g c a g c a g a t t a c g c g c a g a a a a a a a g g a t c g c g a c c a t c g c c a c c a a a a a a a c a a a c g t t c g t c g t c t a a t g c g c g t c t t t t t t t c c t a g

660 ori t c a a g a a g a t c c t t t g a t c t t t t c t a c g g g g t c t g a c g c t c a g t g g a a c g a a a a c t c a c g a g t t c t t c t a g g a a a c t a g a a a a g a t g c c c c a g a c t g c g a g t c a c c t t g c t t t t g a g t g c

BglII 720 GAP promoter t t a a g g g a t t t t g g t c a t g c a t g a g a t c a g a t c t t t t t t g t a g a a a t g t c t t g g t g t c c t a a t t c c c t a a a a c c a g t a c g t a c t c t a g t c t a g a a a a a a c a t c t t t a c a g a a c c a c a g g a

TsoI 780 GAP promoter c g t c c a a t c a g g t a g c c a t c t c t g a a a t a t c t g g c t c c g t t g c a a c t c c g a a c g a c c t g c g c a g g t t a g t c c a t c g g t a g a g a c t t t a t a g a c c g a g g c a a c g t t g a g g c t t g c t g g a c g

BspMIBfuAI 840 GAP promoter t g g c a a c g t a a a a t t c t c c g g g g t a a a a c t t a a a t g t g g a g t a a t g g a a c c a g a a a c g t c a c c g t t g c a t t t t a a g a g g c c c c a t t t t g a a t t t a c a c c t c a t t a c c t t g g t c t t t g c a g

AvrII 900 GAP promoter t c t t c c c t t c t c t c t c c t t c c a c c g c c c g t t a c c g t c c c t a g g a a a t t t t a c t c t g c t g g a g a a g g g a a g a g a g a g g a a g g t g g c g g g c a a t g g c a g g g a t c c t t t a a a a t g a g a c g a c c

BspQISapIBsrDI 960 GAP promoter a g a g c t t c t t c t a c g g c c c c c t t g c a g c a a t g c t c t t c c c a g c a t t a c g t t g c g g g t a a a t c t c g a a g a a g a t g c c g g g g g a a c g t c g t t a c g a g a a g g g t c g t a a t g c a a c g c c c a t t t

PasI 1020 GAP promoter a c g g a g g t c g t g t a c c c g a c c t a g c a g c c c a g g g a t g g a a a a g t c c c g g c c g t c g c t g g c t g c c t c c a g c a c a t g g g c t g g a t c g t c g g g t c c c t a c c t t t t c a g g g c c g g c a g c g a c c g

BspHI 1080 GAP promoter MRLLETTRIEYK a a t a a t a g c g g g c g g a c g c a t g t c a t g a g a t t a t t g g a a a c c a c c a g a a t c g a a t a t a a a t t a t t a t c g c c c g c c t g c g t a c a g t a c t c t a a t a a c c t t t g g t g g t c t t a g c t t a t a t t t

1140 GAP promoter RRTPFPILVSPDPKTLNLIY a g g c g a a c a c c t t t c c c a a t t t t g g t t t c t c c t g a c c c a a a g a c t t t a a a t t t a a t t t a t t c c g c t t g t g g a a a g g g t t a a a a c c a a a g a g g a c t g g g t t t c t g a a a t t t a a a t t a a a t a

EcoRIBstBIMfeI 1200 GAP promoter LSLFQSIEQLFRNEEFMSDA t t g t c c c t a t t t c a a t c a a t t g a a c a a c t a t t t c g a a a c g a g g a a t t c a t g t c t g a t g c g a a c a g g g a t a a a g t t a g t t a a c t t g t t g a t a a a g c t t t g c t c c t t a a g t a c a g a c t a c g c

1260 APSLSNLFYDPTYNPGQSTI g c t c c t t c a t t g a g c a a t c t a t t t t a t g a t c c a a c g t a t a a t c c t g g t c a a a g c a c c a t t c g a g g a a g t a a c t c g t t a g a t a a a a t a c t a g g t t g c a t a t t a g g a c c a g t t t c g t g g t a a

1320 NYTSIYGNGSTITFDELQGL a a c t a c a c t t c c a t a t a t g g g a a t g g a t c t a c c a t c a c t t t c g a t g a g t t g c a a g g t t t a t t g a t g t g a a g g t a t a t a c c c t t a c c t a g a t g g t a g t g a a a g c t a c t c a a c g t t c c a a a t

ScaIHpaI 1380 VNSTVTQAIMFGVRCGAAAL g t t a a c a g t a c t g t t a c t c a g g c c a t t a t g t t t g g t g t c a g a t g t g g t g c a g c t g c t t t g c a a t t g t c a t g a c a a t g a g t c c g g t a a t a c a a a c c a c a g t c t a c a c c a c g t c g a c g a a a c

1440 TLIVMWMTSRSRKTPIFIIN a c t t t g a t t g t c a t g t g g a t g a c a t c g a g a a g c a g a a a a a c g c c g a t t t t c a t t a t c a a c t g a a a c t a a c a g t a c a c c t a c t g t a g c t c t t c g t c t t t t t g c g g c t a a a a g t a a t a g t t g

1500 QVSLFLIILHSALYFKYLLS c a a g t t t c a t t g t t t t t a a t c a t t t t g c a t t c t g c a c t c t a t t t t a a a t a t t t a c t g t c t g t t c a a a g t a a c a a a a a t t a g t a a a a c g t a a g a c g t g a g a t a a a a t t t a t a a a t g a c a g a

1560 NYSSVTYALTGFPQFISRGD a a t t a c t c t t c a g t g a c t t a c g c t c t c a c c g g a t t t c c t c a g t t c a t c a g t a g a g g t g a c t t a a t g a g a a g t c a c t g a a t g c g a g a g t g g c c t a a a g g a g t c a a g t a g t c a t c t c c a c t g

1620 VHVYGATNIIQVLLVASIET g t t c a t g t t t a t g g t g c t a c a a a t a t a a t t c a a g t c c t t c t t g t g g c t t c t a t t g a g a c t c a a g t a c a a a t a c c a c g a t g t t t a t a t t a a g t t c a g g a a g a a c a c c g a a g a t a a c t c t g a

1680 SLVFQIKVIFTGDNFKRIGL t c a c t g g t g t t t c a g a t a a a a g t t a t t t t c a c a g g c g a c a a c t t c a a a a g g a t a g g t t t g a g t g a c c a c a a a g t c t a t t t t c a a t a a a a g t g t c c g c t g t t g a a g t t t t c c t a t c c a a a c

AfeI 1740 MLTSISFTLGIATVTMYFVS a t g c t g a c g t c g a t a t c t t t c a c t t t a g g g a t t g c t a c a g t t a c c a t g t a t t t t g t a a g c t a c g a c t g c a g c t a t a g a a a g t g a a a t c c c t a a c g a t g t c a a t g g t a c a t a a a a c a t t c g

PsiI 1800 AVKGMIVTYNDVSATQDKYF g c t g t t a a a g g t a t g a t t g t g a c t t a t a a t g a t g t t a g t g c c a c c c a a g a t a a a t a c t t c c g a c a a t t t c c a t a c t a a c a c t g a a t a t t a c t a c a a t c a c g g t g g g t t c t a t t t a t g a a g

1860 NASTILLASSINFMSFVLVV a a t g c a t c c a c a a t t t t a c t t g c a t c c t c a a t a a a c t t t a t g t c a t t t g t c c t g g t a g t t t t a c g t a g g t g t t a a a a t g a a c g t a g g a g t t a t t t g a a a t a c a g t a a a c a g g a c c a t c a a

1920 KLILAIRSRRFLGLKQFDSF a a a t t g a t t t t a g c t a t t a g a t c a a g a a g a t t c c t t g g t c t c a a g c a g t t c g a t a g t t t c t t t a a c t a a a a t c g a t a a t c t a g t t c t t c t a a g g a a c c a g a g t t c g t c a a g c t a t c a a a g

BspDIClaI 1980 HILLIMSCQSLLVPSIIFIL c a t a t t t t a c t c a t a a t g t c a t g t c a a t c t t t g t t g g t t c c a t c g a t a a t a t t c a t c c t c g t a t a a a a t g a g t a t t a c a g t a c a g t t a g a a a c a a c c a a g g t a g c t a t t a t a a g t a g g a g

2040 AYSLKPNQGTDVLTTVATLL g c a t a c a g t t t g a a a c c a a a c c a g g g a a c a g a t g t c t t g a c t a c t g t t g c a a c a t t a c t t c g t a t g t c a a a c t t t g g t t t g g t c c c t t g t c t a c a g a a c t g a t g a c a a c g t t g t a a t g a a

2100 AVLSLPLSSMWATAANNAST g c t g t a t t g t c t t t a c c a t t a t c a t c a a t g t g g g c c a c g g c t g c t a a t a a t g c g t c g a c c c g a c a t a a c a g a a a t g g t a a t a g t a g t t a c a c c c g g t g c c g a c g a t t a t t a c g c a g c t g g

SacIINotIBstXIKasINarISfoIPluTI 2160 Myc TVSKTETSQVAPAAAASXXX a c c g t c t c c a a g a c a g a g a c c a g c c a a g t g g c g c c t g c c g c g g c c g c c a g c t t n n n n n n g t g g c a g a g g t t c t g t c t c t g g t c g g t t c a c c g c g g a c g g c g c c g g c g g t c g a a n n n n n n c

2220 1 5 10 EQKLISEEDL (in frame with Myc) NSAVD 1 5 HHHHH Myc 6xHis NKNSSQKRI* a a c a a a a a c t c a t c t c a g a a g a g g a t c t g a a t a g c g c c g t c g a c c a t c a t c a t c a t c a t c t t g t t t t t g a g t a g a g t c t t c t c c t a g a c t t a t c g c g g c a g c t g g t a g t a g t a g t a g t a g

2280 H * 6xHis a t t g a g t t t t a g c c t t a g a c a t g a c t g t t c c t c a g t t c a a g t t g g g c a c t t a c g a g a a g a t a a c t c a a a a t c g g a a t c t g t a c t g a c a a g g a g t c a a g t t c a a c c c g t g a a t g c t c t t c t

AgeI 2340 AOX1 terminator c c g g t c t t g c t a g a t t c t a a t c a a g a g g a t g t c a g a a t g c c a t t t g c c t g a g a g a t g c a g g g c c a g a a c g a t c t a a g a t t a g t t c t c c t a c a g t c t t a c g g t a a a c g g a c t c t c t a c g t c

2400 AOX1 terminator g c t t c a t t t t t g a t a c t t t t t t a t t t g t a a c c t a t a t a g t a t a g g a t t t t t t t t g t c a t t c g a a g t a a a a a c t a t g a a a a a a t a a a c a t t g g a t a t a t c a t a t c c t a a a a a a a a c a g t a a

BclI*BsiWI 2460 AOX1 terminator t t g t t t c t t c t c g t a c g a g c t t g c t c c t g a t c a g c c t a t c t c g c a g c t g a t g a a t a t c t t a a c a a a g a a g a g c a t g c t c g a a c g a g g a c t a g t c g g a t a g a g c g t c g a c t a c t t a t a g a a

2520 AOX1 terminator g t g g t a g g g g t t t g g g a a a a t c a t t c g a g t t t g a t g t t t t t c t t g g t a t t t c c c a c t c c t c a c c a t c c c c a a a c c c t t t t a g t a a g c t c a a a c t a c a a a a a g a a c c a t a a a g g g t g a g g a

BamHI 2580 AOX1 terminator TEF1 promoter c t t c a g a g t a c a g a a g a t t a a g t g a g a c c t t c g t t t g t g c g g a t c c c c c a c a c a c c a t a g g a a g t c t c a t g t c t t c t a a t t c a c t c t g g a a g c a a a c a c g c c t a g g g g g t g t g t g g t a t c

BtgZI 2640 TEF1 promoter c t t c a a a a t g t t t c t a c t c c t t t t t t a c t c t t c c a g a t t t t c t c g g a c t c c g c g c a t c g c g a a g t t t t a c a a a g a t g a g g a a a a a a t g a g a a g g t c t a a a a g a g c c t g a g g c g c g t a g c g

2700 TEF1 promoter c g t a c c a c t t c a a a a c a c c c a a g c a c a g c a t a c t a a a t t t t c c c t c t t t c t t c c t c t a g g g c a t g g t g a a g t t t t g t g g g t t c g t g t c g t a t g a t t t a a a a g g g a g a a a g a a g g a g a t c c

2760 TEF1 promoter g t g t c g t t a a t t a c c c g t a c t a a a g g t t t g g a a a a g a a a a a a g a g a c c g c c t c g t t t c t t c a c a g c a a t t a a t g g g c a t g a t t t c c a a a c c t t t t c t t t t t t c t c t g g c g g a g c a a a g a a

2820 TEF1 promoter t t t c t t c g t c g a a a a a g g c a a t a a a a a t t t t t a t c a c g t t t c t t t t t c t t g a a a t t t t t t a a a g a a g c a g c t t t t t c c g t t a t t t t t a a a a a t a g t g c a a a g a a a a a g a a c t t t a a a a a a

2880 TEF1 promoter t t t t t a g t t t t t t t c t c t t t c a g t g a c c t c c a t t g a t a t t t a a g t t a a t a a a c g g t c t t c a a a a a t c a a a a a a a g a g a a a g t c a c t g g a g g t a a c t a t a a a t t c a a t t a t t t g c c a g a a g

2940 TEF1 promoter a a t t t c t c a a g t t t c a g t t t c a t t t t t c t t g t t c t a t t a c a a c t t t t t t t a c t t c t t g t t t t a a a g a g t t c a a a g t c a a a g t a a a a a g a a c a a g a t a a t g t t g a a a a a a a t g a a g a a c a a

AseI 3000 TEF1 promoter EM7 promoter *RC c a t t a g a a a g a a a g c a t a g c a a t c t a a t c t a a g g g c g g t g t t g a c a a t t a a t c a t c g g c a g t a a t c t t t c t t t c g t a t c g t t a g a t t a g a t t c c c g c c a c a a c t g t t a a t t a g t a g c c g t

MscINcoI 3060 1 5 MAKLT EM7 promoter BleoR LIDAYYLVVLHPVLGHGLQG t a g t a t a t c g g c a t a g t a t a a t a c g a c a a g g t g a g g a a c t a a a c c a t g g c c a a g t t g a c c a t c a t a t a g c c g t a t c a t a t t a t g c t g t t c c a c t c c t t g a t t t g g t a c c g g t t c a a c t g g

BssHIIMauBI 3120 10 15 20 25 SAVPVLTARDVAGAVEFWTD BleoR TGNRHEGRAVDGSRDLEPGV a g t g c c g t t c c g g t g c t c a c c g c g c g c g a c g t c g c c g g a g c g g t c g a g t t c t g g a c c g a c t c a c g g c a a g g c c a c g a g t g g c g c g c g c t g c a g c g g c c t c g c c a g c t c a a g a c c t g g c t g

SgrAITspMIXmaISmaI 3180 30 35 40 45 RLGFSRDFVEDDFAGVVRDD BleoR PEPEGPVEHLVVEGTHDPVV c g g c t c g g g t t c t c c c g g g a c t t c g t g g a g g a c g a c t t c g c c g g t g t g g t c c g g g a c g a c g c c g a g c c c a a g a g g g c c c t g a a g c a c c t c c t g c t g a a g c g g c c a c a c c a g g c c c t g c t g

SexAI*CsiI 3240 50 55 60 65 VTLFISAVQDQVVPDNTLAW BleoR HGQEDARDLVLHHRVVGQGP g t g a c c c t g t t c a t c a g c g c g g t c c a g g a c c a g g t g g t g c c g g a c a a c a c c c t g g c c t g g c a c t g g g a c a a g t a g t c g c g c c a g g t c c t g g t c c a c c a c g g c c t g t t g t g g g a c c g g a c c

3300 70 75 80 85 VWVRGLDELYAEWSEVVSTN BleoR HPHAAQVLQVGLPRLDHGRV g t g t g g g t g c g c g g c c t g g a c g a g c t g t a c g c c g a g t g g t c g g a g g t c g t g t c c a c g a a c c a c a c c c a c g c g c c g g a c c t g c t c g a c a t g c g g c t c a c c a g c c t c c a g c a c a g g t g c t t g

BglIFseI 3360 90 95 100 105 FRDASGPAMTEIGEQPWGRE BleoR EPVGGPRGHGLDALLRPPPL t t c c g g g a c g c c t c c g g g c c g g c c a t g a c c g a g a t c g g c g a g c a g c c g t g g g g g c g g g a g a a g g c c c t g c g g a g g c c c g g c c g g t a c t g g c t c t a g c c g c t c g t c g g c a c c c c c g c c c t c

DraIII 3420 110 115 120 125 FALRDPAGNCVHFVAEEQD* BleoR EGQAVRGAVAHVEHGLLLVS t t c g c c c t g c g c g a c c c g g c c g g c a a c t g c g t g c a c t t c g t g g c c g a g g a g c a g g a c t g a a a g c g g g a c g c g c t g g g c c g g c c g t t g a c g c a c g t g a a g c a c c g g c t c c t c g t c c t g a c t

StuI*KflI 3480 VDSPPGRTGPRPSGDGKEKT c a c g t c c g a c g g c g g c c c a c g g g t c c c a g g c c t c g g a g a t c c g t c c c c c t t t t c c t t t g t g t g c a g g c t g c c g c c g g g t g c c c a g g g t c c g g a g c c t c t a g g c a g g g g g a a a a g g a a a c a

3540 CYC1 terminator C A G T G C G A A T G T A A G T G C G CYC1 SIM c g a t a t c a t g t a a t t a g t t a t g t c a c g c t t a c a t t c a c g c c c t c c c c c c a c a t c c g c t c t g c t a t a g t a c a t t a a t c a a t a c a g t g c g a a t g t a a g t g c g g g a g g g g g g t g t a g g c g a g a

3600 CYC1 terminator a a c c g a a a a g g a a g g a g t t a g a c a a c c t g a a g t c t a g g t c c c t a t t t a t t t t t t t a t a g t t t g g c t t t t c c t t c c t c a a t c t g t t g g a c t t c a g a t c c a g g g a t a a a t a a a a a a a t a t c a

MluIBsrGIAclI 3660 CYC1 terminator t a t g t t a g t a t t a a g a a c g t t a t t t a t a t t t c a a a t t t t t c t t t t t t t t c t g t a c a g a c g a t a c a a t c a t a a t t c t t g c a a t a a a t a t a a a g t t t a a a a a g a a a a a a a a g a c a t g t c t g c

3720 CYC1 terminator c g t g t a c g c a t g t a a c a t t a t a c t g a a a a c c t t g c t t g a g a a g g t t t t g g g a c g c t c g a a g c a c a t g c g t a c a t t g t a a t a t g a c t t t t g g a a c g a a c t c t t c c a a a a c c c t g c g a g c t t

PciI 3780 CYC1 terminator g g c t t t a a t t t g c a a g c t g g a g a c c a a c a t g t g a g c a a a a g g c c a g c a a a a g g c c a g g a a c c g a a a t t a a a c g t t c g a c c t c t g g t t g t a c a c t c g t t t t c c g g t c g t t t t c c g g t c c t t

3792 c c g t a a a a a g g c g g c a t t t t t c c g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.