Addgene p3E-rab26-DN Sequencing Result - Sequence Analyzer Skip to main content
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Sequence Analyzer: p3E-rab26-DN Sequencing Result


Map View

XbaI (3337) ApaI (3329) EcoO109I (3326) PspOMI (3325) AvaI - BsoBI (3322) AflII (3316) AhdI (3311) M13 Forward (3298 .. 3315) M13/pUC Forward (3284 .. 3306) BbsI (3199) AclI (3126) BsaHI (3089) rrnB T2 terminator BspQI - SapI (2873) L4440 (2854 .. 2871) NspI (2760) PciI (2756) DrdI (2654) pBR322ori-F (2601 .. 2620) ApaLI (2442) AlwNI (2347) PflMI (1844) NdeI (13) BsrGI - TatI (113) NgoMIV (245) NaeI (247) BtgZI (267) BpmI (335) DraI (348) HindIII (372) BglII (446) BseRI (682) BsaI (706) BsaAI (828) PsiI (897) BtgI - NcoI (973) EagI - NotI (990) EcoRV (999) T7 promoter T7 (1003 .. 1022) M13 Reverse (1027 .. 1043) pENTR-R (1145 .. 1164) NruI (1238) Kan-R (1223 .. 1242) EcoNI (1493) SspI (1506) AsiSI - PvuI (1581) p3E-rab26-DN 3385 bp

Sequence View

NdeI 60 attR2 c a t a g t g a c t g c a t a t g t t g t g t t t t a c a g t a t t a t g t a g t c t g t t t t t t a t g c a a a a t c g t a t c a c t g a c g t a t a c a a c a c a a a a t g t c a t a a t a c a t c a g a c a a a a a a t a c g t t t t a g

BsrGITatI 120 attR2 t a a t t t a a t a t a t t g a t a t t t a t a t c a t t t t a c g t t t c t c g t t c a a c t t t c t t g t a c a a a a t t a a a t t a t a t a a c t a t a a a t a t a g t a a a a t g c a a a g a g c a a g t t g a a a g a a c a t g t t t

180 attR2 g t g g t g t c g a g g a a a a a a g c g c t g a a g g g g a a g g g c a g t t c a a a c a c a c c g a a t t c a t c t c a c c a c a g c t c c t t t t t t c g c g a c t t c c c c t t c c c g t c a a g t t t g t g t g g c t t a a g t a g a

240 c c g a g c g c t g a a a a a g a g a a g g g g a a a a a a g t g t c g a g c c a g g c g a a c g g a g t g g t t c a t g g c t c g c g a c t t t t t c t c t t c c c c t t t t t t c a c a g c t c g g t c c g c t t g c c t c a c c a a g t a

BtgZINgoMIVNaeI 300 M c c c a g c c g g c c a t c t c t c a g c a a c a g c g g g g a g t t c t a c g a c a t c g c a t t c a a g g t g a t g g g g t c g g c c g g t a g a g a g t c g t t g t c g c c c c t c a a g a t g c t g t a g c g t a a g t t c c a c t a c

DraIBpmI 360 LVGDSGVGKNCLLVRFKDGA c t g g t c g g a g a c t c t g g a g t g g g g a a a a a c t g t c t g c t g g t t c g c t t t a a a g a t g g a g c a g a c c a g c c t c t g a g a c c t c a c c c c t t t t t g a c a g a c g a c c a a g c g a a a t t t c t a c c t c g t

HindIII 420 FLAGSFISTVGIDFRNKVLS t t t c t g g c c g g a a g c t t c a t c t c a a c t g t t g g c a t a g a c t t c a g g a a t a a a g t g c t g a g c a a a g a c c g g c c t t c g a a g t a g a g t t g a c a a c c g t a t c t g a a g t c c t t a t t t c a c g a c t c g

BglII 480 IDSMRVKLQIWDTAGQERFR a t c g a c a g c a t g a g g g t t a a a c t a c a g a t c t g g g a t a c a g c g g g a c a g g a g c g t t t c a g g t a g c t g t c g t a c t c c c a a t t t g a t g t c t a g a c c c t a t g t c g c c c t g t c c t c g c a a a g t c c

540 SVTHAYYRDAHALLLLYDVT a g t g t g a c g c a c g c a t a c t a t c g a g a c g c t c a c g c t c t t t t g c t g c t t t a t g a t g t g a c a t c a c a c t g c g t g c g t a t g a t a g c t c t g c g a g t g c g a g a a a a c g a c g a a a t a c t a c a c t g t

600 NKSSFDNIQAWLTEIHEFAQ a a t a a a t c c t c c t t t g a c a a c a t a c a g g c c t g g c t g a c g g a g a t t c a c g a g t t c g c t c a g t t a t t t a g g a g g a a a c t g t t g t a t g t c c g g a c c g a c t g c c t c t a a g t g c t c a a g c g a g t c

660 QNVVIMLLGNKADATHERIV c a g a a c g t g g t c a t t a t g c t g t t g g g t a a t a a g g c t g a t g c t a c a c a t g a a c g c a t t g t g g t c t t g c a c c a g t a a t a c g a c a a c c c a t t a t t c c g a c t a c g a t g t g t a c t t g c g t a a c a c

BsaIBseRI 720 KREEGEKLAKEFGVPFMETS a a g a g g g a g g a g g g g g a g a a a c t a g c t a a g g a g t t t g g c g t t c c c t t c a t g g a g a c c a g t t t c t c c c t c c t c c c c c t c t t t g a t c g a t t c c t c a a a c c g c a a g g g a a g t a c c t c t g g t c a

780 AKTGLNVELAFTAVAKELKH g c t a a a a c a g g c c t g a a t g t g g a g t t g g c c t t c a c t g c g g t t g c c a a g g a a c t g a a g c a c c g a t t t t g t c c g g a c t t a c a c c t c a a c c g g a a g t g a c g c c a a c g g t t c c t t g a c t t c g t g

BsaAI 840 RELKEPNEPKFQLQEYVNKE a g g g a g t t a a a g g a a c c a a a c g a g c c c a a g t t t c a g c t g c a g g a g t a c g t g a a c a a g g a g t c c c t c a a t t t c c t t g g t t t g c t c g g g t t c a a a g t c g a c g t c c t c a t g c a c t t g t t c c t c

PsiI 900 attL3 MKGVGCCRS* a t g a a g g g a g t c g g g t g c t g t c g c t c a t a a c a a c t t t a t t a t a c a a a g t t g g c a t t a t a a t a c t t c c c t c a g c c c a c g a c a g c g a g t a t t g t t g a a a t a a t a t g t t t c a a c c g t a a t a t t

960 attL3 a a a a g c a t t g c t t a t c a a t t t g t t g c a a c g a a c a g g t c a c t a t c a g t c a a a a t a a a a t c a t t t t c g t a a c g a a t a g t t a a a c a a c g t t g c t t g t c c a g t g a t a g t c a g t t t t a t t t t a g t

EcoRVEagINotINcoIBtgI 1020 attL3 T7 promoter G G G A T A T C A C T C A G C A T A T7 t t a t t t g g a g c t c c a t g g t a g c g t t a a c g c g g c c g c g a t a t c c c c t a t a g t g a g t c g t a t a a t a a a c c t c g a g g t a c c a t c g c a a t t g c g c c g g c g c t a t a g g g g a t a t c a c t c a g c a t a

1080 T7 promoter M13 rev A T T7 C A G T A T C G A C A A A G G A C M13 Reverse t a c a t g g t c a t a g c t g t t t c c t g g c a g c t c t g g c c c g t g t c t c a a a a t c t c t g a t g t t a c a t g t a c c a g t a t c g a c a a a g g a c c g t c g a g a c c g g g c a c a g a g t t t t a g a g a c t a c a a t g

1140 a t t g c a c a a g a t a a a a a t a t a t c a t c a t g a a c a a t a a a a c t g t c t g c t t a c a t a a a c a g t t a a c g t g t t c t a t t t t t a t a t a g t a g t a c t t g t t a t t t t g a c a g a c g a a t g t a t t t g t c a

1200 1 5 10 15 MSHIQRETSRPRLNS KanR G T T C C C C A C A A T A C T C G G T A pENTR-R MSHIQRETSRPRLNS a a t a c a a g g g g t g t t a t g a g c c a t a t t c a a c g g g a a a c g t c g a g g c c g c g a t t a a a t t c c t t a t g t t c c c c a c a a t a c t c g g t a t a a g t t g c c c t t t g c a g c t c c g g c g c t a a t t t a a g g

NruI 1260 20 25 30 35 NMDADLYGYKWARDNVGQSG KanR C C A T A T T T A C C C G A G C G C T A Kan-R NMDADLYGYKWARDNVGQSG a a c a t g g a t g c t g a t t t a t a t g g g t a t a a a t g g g c t c g c g a t a a t g t c g g g c a a t c a g g t t t g t a c c t a c g a c t a a a t a t a c c c a t a t t t a c c c g a g c g c t a t t a c a g c c c g t t a g t c c a

1320 40 45 50 55 ATIYRLYGKPDAPELFLKHG KanR ATIYRLYGKPDAPELFLKHG g c g a c a a t c t a t c g c t t g t a t g g g a a g c c c g a t g c g c c a g a g t t g t t t c t g a a a c a t g g c c g c t g t t a g a t a g c g a a c a t a c c c t t c g g g c t a c g c g g t c t c a a c a a a g a c t t t g t a c c g

1380 60 65 70 75 KGSVANDVTDEMVRLNWLTE KanR KGSVANDVTDEMVRLNWLTE a a a g g t a g c g t t g c c a a t g a t g t t a c a g a t g a g a t g g t c a g a c t a a a c t g g c t g a c g g a a t t t c c a t c g c a a c g g t t a c t a c a a t g t c t a c t c t a c c a g t c t g a t t t g a c c g a c t g c c t t

1440 80 85 90 95 FMPLPTIKHFIRTPDDAWLL KanR FMPLPTIKHFIRTPDDAWLL t t t a t g c c t c t t c c g a c c a t c a a g c a t t t t a t c c g t a c t c c t g a t g a t g c a t g g t t a c t c a a a t a c g g a g a a g g c t g g t a g t t c g t a a a a t a g g c a t g a g g a c t a c t a c g t a c c a a t g a g

EcoNI 1500 100 105 110 115 TTAIPGKTAFQVLEEYPDSG KanR TTAIPGKTAFQVLEEYPDSG a c c a c t g c g a t c c c c g g a a a a a c a g c a t t c c a g g t a t t a g a a g a a t a t c c t g a t t c a g g t t g g t g a c g c t a g g g g c c t t t t t g t c g t a a g g t c c a t a a t c t t c t t a t a g g a c t a a g t c c a

SspI 1560 120 125 130 135 ENIVDALAVFLRRLHSIPVC KanR ENIVDALAVFLRRLHSIPVC g a a a a t a t t g t t g a t g c g c t g g c a g t g t t c c t g c g c c g g t t g c a t t c g a t t c c t g t t t g t c t t t t a t a a c a a c t a c g c g a c c g t c a c a a g g a c g c g g c c a a c g t a a g c t a a g g a c a a a c a

AsiSIPvuI 1620 140 145 150 155 NCPFNSDRVFRLAQAQSRMN KanR NCPFNSDRVFRLAQAQSRMN a a t t g t c c t t t t a a c a g c g a t c g c g t a t t t c g t c t c g c t c a g g c g c a a t c a c g a a t g a a t t t a a c a g g a a a a t t g t c g c t a g c g c a t a a a g c a g a g c g a g t c c g c g t t a g t g c t t a c t t a

1680 160 165 170 175 NGLVDASDFDDERNGWPVEQ KanR NGLVDASDFDDERNGWPVEQ a a c g g t t t g g t t g a t g c g a g t g a t t t t g a t g a c g a g c g t a a t g g c t g g c c t g t t g a a c a a t t g c c a a a c c a a c t a c g c t c a c t a a a a c t a c t g c t c g c a t t a c c g a c c g g a c a a c t t g t t

1740 180 185 190 195 VWKEMHKLLPFSPDSVVTHG KanR VWKEMHKLLPFSPDSVVTHG g t c t g g a a a g a a a t g c a t a a a c t t t t g c c a t t c t c a c c g g a t t c a g t c g t c a c t c a t g g t c a g a c c t t t c t t t a c g t a t t t g a a a a c g g t a a g a g t g g c c t a a g t c a g c a g t g a g t a c c a

1800 200 205 210 215 DFSLDNLIFDEGKLIGCIDV KanR DFSLDNLIFDEGKLIGCIDV g a t t t c t c a c t t g a t a a c c t t a t t t t t g a c g a g g g g a a a t t a a t a g g t t g t a t t g a t g t t c t a a a g a g t g a a c t a t t g g a a t a a a a a c t g c t c c c c t t t a a t t a t c c a a c a t a a c t a c a a

PflMI 1860 220 225 230 235 GRVGIADRYQDLAILWNCLG KanR GRVGIADRYQDLAILWNCLG g g a c g a g t c g g a a t c g c a g a c c g a t a c c a g g a t c t t g c c a t c c t a t g g a a c t g c c t c g g t c c t g c t c a g c c t t a g c g t c t g g c t a t g g t c c t a g a a c g g t a g g a t a c c t t g a c g g a g c c a

1920 240 245 250 255 EFSPSLQKRLFQKYGIDNPD KanR EFSPSLQKRLFQKYGIDNPD g a g t t t t c t c c t t c a t t a c a g a a a c g g c t t t t t c a a a a a t a t g g t a t t g a t a a t c c t g a t c t c a a a a g a g g a a g t a a t g t c t t t g c c g a a a a a g t t t t t a t a c c a t a a c t a t t a g g a c t a

1980 260 265 270 MNKLQFHLMLDEFF* KanR MNKLQFHLMLDEFF* a t g a a t a a a t t g c a g t t t c a t t t g a t g c t c g a t g a g t t t t t c t a a t c a g a a t t g g t t a a t t a c t t a t t t a a c g t c a a a g t a a a c t a c g a g c t a c t c a a a a a g a t t a g t c t t a a c c a a t t a

2040 t g g t t g t a a c a c t g g c a g a g c a t t a c g c t g a c t t g a c g g g a c g g c g c a a g c t c a t g a c c a a c c a a c a t t g t g a c c g t c t c g t a a t g c g a c t g a a c t g c c c t g c c g c g t t c g a g t a c t g g t

2100 a a a t c c c t t a a c g t g a g t t a c g c g t c g t t c c a c t g a g c g t c a g a c c c c g t a g a a a a g a t c t t t a g g g a a t t g c a c t c a a t g c g c a g c a a g g t g a c t c g c a g t c t g g g g c a t c t t t t c t a g

2160 ori a a a g g a t c t t c t t g a g a t c c t t t t t t t c t g c g c g t a a t c t g c t g c t t g c a a a c a a a a a a a t t t c c t a g a a g a a c t c t a g g a a a a a a a g a c g c g c a t t a g a c g a c g a a c g t t t g t t t t t t t

2220 ori c c a c c g c t a c c a g c g g t g g t t t g t t t g c c g g a t c a a g a g c t a c c a a c t c t t t t t c c g a a g g g t g g c g a t g g t c g c c a c c a a a c a a a c g g c c t a g t t c t c g a t g g t t g a g a a a a a g g c t t c

2280 ori g t a a c t g g c t t c a g c a g a g c g c a g a t a c c a a a t a c t g t t c t t c t a g t g t a g c c g t a g t t a c a t t g a c c g a a g t c g t c t c g c g t c t a t g g t t t a t g a c a a g a a g a t c a c a t c g g c a t c a a t

2340 ori g g c c a c c a c t t c a a g a a c t c t g t a g c a c c g c c t a c a t a c c t c g c t c t g c t a a t c c t g t t a c c g g t g g t g a a g t t c t t g a g a c a t c g t g g c g g a t g t a t g g a g c g a g a c g a t t a g g a c a a t

AlwNI 2400 ori c c a g t g g c t g c t g c c a g t g g c g a t a a g t c g t g t c t t a c c g g g t t g g a c t c a a g a c g a t a g g g t c a c c g a c g a c g g t c a c c g c t a t t c a g c a c a g a a t g g c c c a a c c t g a g t t c t g c t a t c

ApaLI 2460 ori t t a c c g g a t a a g g c g c a g c g g t c g g g c t g a a c g g g g g g t t c g t g c a c a c a g c c c a g c t t g a a t g g c c t a t t c c g c g t c g c c a g c c c g a c t t g c c c c c c a a g c a c g t g t g t c g g g t c g a a c

2520 ori g a g c g a a c g a c c t a c a c c g a a c t g a g a t a c c t a c a g c g t g a g c t a t g a g a a a g c g c c a c g c t c g c t t g c t g g a t g t g g c t t g a c t c t a t g g a t g t c g c a c t c g a t a c t c t t t c g c g g t g c

2580 ori c t t c c c g a a g g g a g a a a g g c g g a c a g g t a t c c g g t a a g c g g c a g g g t c g g a a c a g g a g a g g a a g g g c t t c c c t c t t t c c g c c t g t c c a t a g g c c a t t c g c c g t c c c a g c c t t g t c c t c t c

2640 ori G G G A A A C G C C T G G T A T C T T T pBR322ori-F c g c a c g a g g g a g c t t c c a g g g g g a a a c g c c t g g t a t c t t t a t a g t c c t g t c g g g t t t c g c g c g t g c t c c c t c g a a g g t c c c c c t t t g c g g a c c a t a g a a a t a t c a g g a c a g c c c a a a g c g

DrdI 2700 ori c a c c t c t g a c t t g a g c g t c g a t t t t t g t g a t g c t c g t c a g g g g g g c g g a g c c t a t g g a a a g t g g a g a c t g a a c t c g c a g c t a a a a a c a c t a c g a g c a g t c c c c c c g c c t c g g a t a c c t t t

NspIPciI 2760 a a c g c c a g c a a c g c g g c c t t t t t a c g g t t c c t g g c c t t t t g c t g g c c t t t t g c t c a c a t g t t g c g g t c g t t g c g c c g g a a a a a t g c c a a g g a c c g g a a a a c g a c c g g a a a a c g a g t g t a c

2820 t t c t t t c c t g c g t t a t c c c c t g a t t c t g t g g a t a a c c g t a t t a c c g c c t t t g a g t g a g c t a a g a a a g g a c g c a a t a g g g g a c t a a g a c a c c t a t t g g c a t a a t g g c g g a a a c t c a c t c g a

BspQISapI 2880 A G C G A G T C A G T G A G C G A G L4440 g a t a c c g c t c g c c g c a g c c g a a c g a c c g a g c g c a g c g a g t c a g t g a g c g a g g a a g c g g a a c t a t g g c g a g c g g c g t c g g c t t g c t g g c t c g c g t c g c t c a g t c a c t c g c t c c t t c g c c t t

2940 g a g c g c c c a a t a c g c a a a c c g c c t c t c c c c g c g c g t t g g c c g a t t c a t t a a t g c a g c t g g c t c g c g g g t t a t g c g t t t g g c g g a g a g g g g c g c g c a a c c g g c t a a g t a a t t a c g t c g a c c

3000 c a c g a c a g g t t t c c c g a c t g g a a a g c g g g c a g t g a g c g c a a c g c a a t t a a t a c g c g t a c c g t g c t g t c c a a a g g g c t g a c c t t t c g c c c g t c a c t c g c g t t g c g t t a a t t a t g c g c a t g g

3060 rrnB T2 terminator g c t a g c c a g g a a g a g t t t g t a g a a a c g c a a a a a g g c c a t c c g t c a g g a t g g c c t t c t g c t c g a t c g g t c c t t c t c a a a c a t c t t t g c g t t t t t c c g g t a g g c a g t c c t a c c g g a a g a c g a

BsaHI 3120 t a g t t t g a t g c c t g g c a g t t t a t g g c g g g c g t c c t g c c c g c c a c c c t c c g g g c c g t t g c t a t c a a a c t a c g g a c c g t c a a a t a c c g c c c g c a g g a c g g g c g g t g g g a g g c c c g g c a a c g a

AclI 3180 rrnB T1 terminator t c a c a a c g t t c a a a t c c g c t c c c g g c g g a t t t g t c c t a c t c a g g a g a g c g t t c a c c g a c a a g t g t t g c a a g t t t a g g c g a g g g c c g c c t a a a c a g g a t g a g t c c t c t c g c a a g t g g c t g t

BbsI 3240 rrnB T1 terminator a a c a a c a g a t a a a a c g a a a g g c c c a g t c t t c c g a c t g a g c c t t t c g t t t t a t t t g a t g c c t t g t t g t c t a t t t t g c t t t c c g g g t c a g a a g g c t g a c t c g g a a a g c a a a a t a a a c t a c g g

3300 M13 fwd C C C A G T C A C G A C G T T G T M13/pUC Forward T G T M13 Forward t g g c a g t t c c c t a c t c t c g c g t t a a c g c t a g c a t g g a t g t t t t c c c a g t c a c g a c g t t g t a c c g t c a a g g g a t g a g a g c g c a a t t g c g a t c g t a c c t a c a a a a g g g t c a g t g c t g c a a c a

XbaIAhdIAflIIBsoBIAvaIPspOMIEcoO109IApaI 3360 M13 fwd A A A A C G M13/pUC Forward A A A A C G A C G G C C A G T M13 Forward a a a a c g a c g g c c a g t c t t a a g c t c g g g c c c t g c a g c t c t a g a g c t c g a a t t c t a c a g g t c t t t t g c t g c c g g t c a g a a t t c g a g c c c g g g a c g t c g a g a t c t c g a g c t t a a g a t g t c c a g

3385 a c t a a t a c c a t c t a a g t a g t t g g t t t g a t t a t g g t a g a t t c a t c a a c c a a

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.