Addgene p3E-rab26-DN - Sequence Analyzer Skip to main content
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Sequence Analyzer: p3E-rab26-DN


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PciI (3379) DrdI (3277) pBR322ori-F (3224 .. 3243) ApaLI (3065) AlwNI (2970) PflMI (2467) AsiSI - PvuI (2204) SspI (2129) EcoNI (2116) Kan-R (1846 .. 1865) NruI (1861) pENTR-R (1768 .. 1787) NspI (3383) L4440 (92 .. 109) BspQI - SapI (111) rrnB T2 terminator BsaHI (327) AclI (364) BbsI (437) M13/pUC Forward (522 .. 544) M13 Forward (536 .. 553) AhdI (549) AflII (554) AvaI - BsoBI (560) PspOMI (563) EcoO109I (564) ApaI (567) XbaI (575) NdeI (636) BsrGI - TatI (736) NgoMIV (868) NaeI (870) BtgZI (890) BpmI (958) DraI (971) HindIII (995) BglII (1069) BseRI (1305) BsaI (1329) BsaAI (1451) PsiI (1520) BtgI - NcoI (1596) EagI - NotI (1613) EcoRV (1622) T7 (1626 .. 1645) M13 rev M13 Reverse (1650 .. 1666) p3E-rab26-DN 3385 bp

Sequence View

5ʹ 3ʹ 60 c t t t c c t g c g t t a t c c c c t g a t t c t g t g g a t a a c c g t a t t a c c g c c t t t g a g t g a g c t g a g a a a g g a c g c a a t a g g g g a c t a a g a c a c c t a t t g g c a t a a t g g c g g a a a c t c a c t c g a c t

BspQISapI 120 A G C G A G T C A G T G A G C G A G L4440 t a c c g c t c g c c g c a g c c g a a c g a c c g a g c g c a g c g a g t c a g t g a g c g a g g a a g c g g a a g a a t g g c g a g c g g c g t c g g c t t g c t g g c t c g c g t c g c t c a g t c a c t c g c t c c t t c g c c t t c t

180 g c g c c c a a t a c g c a a a c c g c c t c t c c c c g c g c g t t g g c c g a t t c a t t a a t g c a g c t g g c a c g c g g g t t a t g c g t t t g g c g g a g a g g g g c g c g c a a c c g g c t a a g t a a t t a c g t c g a c c g t

240 c g a c a g g t t t c c c g a c t g g a a a g c g g g c a g t g a g c g c a a c g c a a t t a a t a c g c g t a c c g c g c t g t c c a a a g g g c t g a c c t t t c g c c c g t c a c t c g c g t t g c g t t a a t t a t g c g c a t g g c g

300 rrnB T2 terminator t a g c c a g g a a g a g t t t g t a g a a a c g c a a a a a g g c c a t c c g t c a g g a t g g c c t t c t g c t t a a t c g g t c c t t c t c a a a c a t c t t t g c g t t t t t c c g g t a g g c a g t c c t a c c g g a a g a c g a a t

BsaHI 360 g t t t g a t g c c t g g c a g t t t a t g g c g g g c g t c c t g c c c g c c a c c c t c c g g g c c g t t g c t t c c a a a c t a c g g a c c g t c a a a t a c c g c c c g c a g g a c g g g c g g t g g g a g g c c c g g c a a c g a a g

AclI 420 rrnB T1 terminator a c a a c g t t c a a a t c c g c t c c c g g c g g a t t t g t c c t a c t c a g g a g a g c g t t c a c c g a c a a a t g t t g c a a g t t t a g g c g a g g g c c g c c t a a a c a g g a t g a g t c c t c t c g c a a g t g g c t g t t t

BbsI 480 rrnB T1 terminator c a a c a g a t a a a a c g a a a g g c c c a g t c t t c c g a c t g a g c c t t t c g t t t t a t t t g a t g c c t g g t t g t c t a t t t t g c t t t c c g g g t c a g a a g g c t g a c t c g g a a a g c a a a a t a a a c t a c g g a c

540 M13 fwd C C C A G T C A C G A C G T T G T A A M13/pUC Forward T G T A A M13 Forward g c a g t t c c c t a c t c t c g c g t t a a c g c t a g c a t g g a t g t t t t c c c a g t c a c g a c g t t g t a a c g t c a a g g g a t g a g a g c g c a a t t g c g a t c g t a c c t a c a a a a g g g t c a g t g c t g c a a c a t t

XbaIAhdIAflIIBsoBIAvaIPspOMIEcoO109IApaI 600 M13 fwd A A C G M13/pUC Forward A A C G A C G G C C A G T M13 Forward a a c g a c g g c c a g t c t t a a g c t c g g g c c c t g c a g c t c t a g a g c t c g a a t t c t a c a g g t c a c t t g c t g c c g g t c a g a a t t c g a g c c c g g g a c g t c g a g a t c t c g a g c t t a a g a t g t c c a g t g

NdeI 660 attR2 t a a t a c c a t c t a a g t a g t t g g t t c a t a g t g a c t g c a t a t g t t g t g t t t t a c a g t a t t a t g a t t a t g g t a g a t t c a t c a a c c a a g t a t c a c t g a c g t a t a c a a c a c a a a a t g t c a t a a t a c

720 attR2 t a g t c t g t t t t t t a t g c a a a a t c t a a t t t a a t a t a t t g a t a t t t a t a t c a t t t t a c g t t t a t c a g a c a a a a a a t a c g t t t t a g a t t a a a t t a t a t a a c t a t a a a t a t a g t a a a a t g c a a a

BsrGITatI 780 attR2 c t c g t t c a a c t t t c t t g t a c a a a g t g g t g t c g a g g a a a a a a g c g c t g a a g g g g a a g g g c a g a g c a a g t t g a a a g a a c a t g t t t c a c c a c a g c t c c t t t t t t c g c g a c t t c c c c t t c c c g t

840 g t t c a a a c a c a c c g a a t t c a t c t c c g a g c g c t g a a a a a g a g a a g g g g a a a a a a g t g t c g a c a a g t t t g t g t g g c t t a a g t a g a g g c t c g c g a c t t t t t c t c t t c c c c t t t t t t c a c a g c t

BtgZINgoMIVNaeI 900 g c c a g g c g a a c g g a g t g g t t c a t c c c a g c c g g c c a t c t c t c a g c a a c a g c g g g g a g t t c t c g g t c c g c t t g c c t c a c c a a g t a g g g t c g g c c g g t a g a g a g t c g t t g t c g c c c c t c a a g a

BpmI 960 MLVGDSGVGKNCL a c g a c a t c g c a t t c a a g g t g a t g c t g g t c g g a g a c t c t g g a g t g g g g a a a a a c t g t c t g c t g c t g t a g c g t a a g t t c c a c t a c g a c c a g c c t c t g a g a c c t c a c c c c t t t t t g a c a g a c g

HindIIIDraI 1020 LVRFKDGAFLAGSFISTVGI t g g t t c g c t t t a a a g a t g g a g c a t t t c t g g c c g g a a g c t t c a t c t c a a c t g t t g g c a t a g a c c a a g c g a a a t t t c t a c c t c g t a a a g a c c g g c c t t c g a a g t a g a g t t g a c a a c c g t a t c

BglII 1080 DFRNKVLSIDSMRVKLQIWD a c t t c a g g a a t a a a g t g c t g a g c a t c g a c a g c a t g a g g g t t a a a c t a c a g a t c t g g g a t a t g a a g t c c t t a t t t c a c g a c t c g t a g c t g t c g t a c t c c c a a t t t g a t g t c t a g a c c c t a t

1140 TAGQERFRSVTHAYYRDAHA c a g c g g g a c a g g a g c g t t t c a g g a g t g t g a c g c a c g c a t a c t a t c g a g a c g c t c a c g c t c g t c g c c c t g t c c t c g c a a a g t c c t c a c a c t g c g t g c g t a t g a t a g c t c t g c g a g t g c g a g

1200 LLLLYDVTNKSSFDNIQAWL t t t t g c t g c t t t a t g a t g t g a c a a a t a a a t c c t c c t t t g a c a a c a t a c a g g c c t g g c t g a a a a a c g a c g a a a t a c t a c a c t g t t t a t t t a g g a g g a a a c t g t t g t a t g t c c g g a c c g a c t

1260 TEIHEFAQQNVVIMLLGNKA c g g a g a t t c a c g a g t t c g c t c a g c a g a a c g t g g t c a t t a t g c t g t t g g g t a a t a a g g c t g g c c t c t a a g t g c t c a a g c g a g t c g t c t t g c a c c a g t a a t a c g a c a a c c c a t t a t t c c g a c

BseRI 1320 DATHERIVKREEGEKLAKEF a t g c t a c a c a t g a a c g c a t t g t g a a g a g g g a g g a g g g g g a g a a a c t a g c t a a g g a g t t t g t a c g a t g t g t a c t t g c g t a a c a c t t c t c c c t c c t c c c c c t c t t t g a t c g a t t c c t c a a a c

BsaI 1380 GVPFMETSAKTGLNVELAFT g c g t t c c c t t c a t g g a g a c c a g t g c t a a a a c a g g c c t g a a t g t g g a g t t g g c c t t c a c t g c g c a a g g g a a g t a c c t c t g g t c a c g a t t t t g t c c g g a c t t a c a c c t c a a c c g g a a g t g a c

1440 AVAKELKHRELKEPNEPKFQ c g g t t g c c a a g g a a c t g a a g c a c a g g g a g t t a a a g g a a c c a a a c g a g c c c a a g t t t c a g c g c c a a c g g t t c c t t g a c t t c g t g t c c c t c a a t t t c c t t g g t t t g c t c g g g t t c a a a g t c g

BsaAI 1500 attL3 LQEYVNKEMKGVGCCRS* t g c a g g a g t a c g t g a a c a a g g a g a t g a a g g g a g t c g g g t g c t g t c g c t c a t a a c a a c t t t a c g t c c t c a t g c a c t t g t t c c t c t a c t t c c c t c a g c c c a c g a c a g c g a g t a t t g t t g a a a

PsiI 1560 attL3 a t t a t a c a a a g t t g g c a t t a t a a a a a a g c a t t g c t t a t c a a t t t g t t g c a a c g a a c a g g t t a a t a t g t t t c a a c c g t a a t a t t t t t t c g t a a c g a a t a g t t a a a c a a c g t t g c t t g t c c a

EagINotINcoIBtgI 1620 attL3 c a c t a t c a g t c a a a a t a a a a t c a t t a t t t g g a g c t c c a t g g t a g c g t t a a c g c g g c c g c g g t g a t a g t c a g t t t t a t t t t a g t a a t a a a c c t c g a g g t a c c a t c g c a a t t g c g c c g g c g c

EcoRV 1680 T7 promoter M13 rev G G G A T A T C A C T C A G C A T A A T T7 C A G T A T C G A C A A A G G A C M13 Reverse a t a t c c c c t a t a g t g a g t c g t a t t a c a t g g t c a t a g c t g t t t c c t g g c a g c t c t g g c c c g t a t a g g g g a t a t c a c t c a g c a t a a t g t a c c a g t a t c g a c a a a g g a c c g t c g a g a c c g g g c

1740 t g t c t c a a a a t c t c t g a t g t t a c a t t g c a c a a g a t a a a a a t a t a t c a t c a t g a a c a a t a a a c a g a g t t t t a g a g a c t a c a a t g t a a c g t g t t c t a t t t t t a t a t a g t a g t a c t t g t t a t t

1800 1 5 MSHIQRE KanR G T T C C C C A C A A T A C T C G G T A pENTR-R MSHIQRE a a c t g t c t g c t t a c a t a a a c a g t a a t a c a a g g g g t g t t a t g a g c c a t a t t c a a c g g g a a a t t g a c a g a c g a a t g t a t t t g t c a t t a t g t t c c c c a c a a t a c t c g g t a t a a g t t g c c c t t t

1860 10 15 20 25 TSRPRLNSNMDADLYGYKWA KanR C C A T A T T T A C C C G A G Kan-R TSRPRLNSNMDADLYGYKWA c g t c g a g g c c g c g a t t a a a t t c c a a c a t g g a t g c t g a t t t a t a t g g g t a t a a a t g g g c t c g c a g c t c c g g c g c t a a t t t a a g g t t g t a c c t a c g a c t a a a t a t a c c c a t a t t t a c c c g a g

NruI 1920 30 35 40 45 RDNVGQSGATIYRLYGKPDA KanR C G C T A Kan-R RDNVGQSGATIYRLYGKPDA g c g a t a a t g t c g g g c a a t c a g g t g c g a c a a t c t a t c g c t t g t a t g g g a a g c c c g a t g c g c c g c t a t t a c a g c c c g t t a g t c c a c g c t g t t a g a t a g c g a a c a t a c c c t t c g g g c t a c g c g

1980 50 55 60 65 PELFLKHGKGSVANDVTDEM KanR PELFLKHGKGSVANDVTDEM c a g a g t t g t t t c t g a a a c a t g g c a a a g g t a g c g t t g c c a a t g a t g t t a c a g a t g a g a t g g g t c t c a a c a a a g a c t t t g t a c c g t t t c c a t c g c a a c g g t t a c t a c a a t g t c t a c t c t a c c

2040 70 75 80 85 VRLNWLTEFMPLPTIKHFIR KanR VRLNWLTEFMPLPTIKHFIR t c a g a c t a a a c t g g c t g a c g g a a t t t a t g c c t c t t c c g a c c a t c a a g c a t t t t a t c c g t a a g t c t g a t t t g a c c g a c t g c c t t a a a t a c g g a g a a g g c t g g t a g t t c g t a a a a t a g g c a t

2100 90 95 100 105 TPDDAWLLTTAIPGKTAFQV KanR TPDDAWLLTTAIPGKTAFQV c t c c t g a t g a t g c a t g g t t a c t c a c c a c t g c g a t c c c c g g a a a a a c a g c a t t c c a g g t a t g a g g a c t a c t a c g t a c c a a t g a g t g g t g a c g c t a g g g g c c t t t t t g t c g t a a g g t c c a t a

SspIEcoNI 2160 110 115 120 125 LEEYPDSGENIVDALAVFLR KanR LEEYPDSGENIVDALAVFLR t a g a a g a a t a t c c t g a t t c a g g t g a a a a t a t t g t t g a t g c g c t g g c a g t g t t c c t g c g c c a t c t t c t t a t a g g a c t a a g t c c a c t t t t a t a a c a a c t a c g c g a c c g t c a c a a g g a c g c g g

AsiSIPvuI 2220 130 135 140 145 RLHSIPVCNCPFNSDRVFRL KanR RLHSIPVCNCPFNSDRVFRL g g t t g c a t t c g a t t c c t g t t t g t a a t t g t c c t t t t a a c a g c g a t c g c g t a t t t c g t c t c g c c a a c g t a a g c t a a g g a c a a a c a t t a a c a g g a a a a t t g t c g c t a g c g c a t a a a g c a g a g c

2280 150 155 160 165 AQAQSRMNNGLVDASDFDDE KanR AQAQSRMNNGLVDASDFDDE c t c a g g c g c a a t c a c g a a t g a a t a a c g g t t t g g t t g a t g c g a g t g a t t t t g a t g a c g a g c g a g t c c g c g t t a g t g c t t a c t t a t t g c c a a a c c a a c t a c g c t c a c t a a a a c t a c t g c t c g

2340 170 175 180 185 RNGWPVEQVWKEMHKLLPFS KanR RNGWPVEQVWKEMHKLLPFS g t a a t g g c t g g c c t g t t g a a c a a g t c t g g a a a g a a a t g c a t a a a c t t t t g c c a t t c t c a c c a t t a c c g a c c g g a c a a c t t g t t c a g a c c t t t c t t t a c g t a t t t g a a a a c g g t a a g a g t g

2400 190 195 200 205 PDSVVTHGDFSLDNLIFDEG KanR PDSVVTHGDFSLDNLIFDEG c g g a t t c a g t c g t c a c t c a t g g t g a t t t c t c a c t t g a t a a c c t t a t t t t t g a c g a g g g g a g c c t a a g t c a g c a g t g a g t a c c a c t a a a g a g t g a a c t a t t g g a a t a a a a a c t g c t c c c c t

2460 210 215 220 225 KLIGCIDVGRVGIADRYQDL KanR KLIGCIDVGRVGIADRYQDL a a t t a a t a g g t t g t a t t g a t g t t g g a c g a g t c g g a a t c g c a g a c c g a t a c c a g g a t c t t g t t a a t t a t c c a a c a t a a c t a c a a c c t g c t c a g c c t t a g c g t c t g g c t a t g g t c c t a g a a c

PflMI 2520 230 235 240 245 AILWNCLGEFSPSLQKRLFQ KanR AILWNCLGEFSPSLQKRLFQ c c a t c c t a t g g a a c t g c c t c g g t g a g t t t t c t c c t t c a t t a c a g a a a c g g c t t t t t c a a a g g t a g g a t a c c t t g a c g g a g c c a c t c a a a a g a g g a a g t a a t g t c t t t g c c g a a a a a g t t t

2580 250 255 260 265 KYGIDNPDMNKLQFHLMLDE KanR KYGIDNPDMNKLQFHLMLDE a a t a t g g t a t t g a t a a t c c t g a t a t g a a t a a a t t g c a g t t t c a t t t g a t g c t c g a t g a g t t t a t a c c a t a a c t a t t a g g a c t a t a c t t a t t t a a c g t c a a a g t a a a c t a c g a g c t a c t c a

2640 270 FF* KanR FF* t t t t c t a a t c a g a a t t g g t t a a t t g g t t g t a a c a c t g g c a g a g c a t t a c g c t g a c t t g a c a a a a g a t t a g t c t t a a c c a a t t a a c c a a c a t t g t g a c c g t c t c g t a a t g c g a c t g a a c t g

2700 g g g a c g g c g c a a g c t c a t g a c c a a a a t c c c t t a a c g t g a g t t a c g c g t c g t t c c a c t g a g c c c t g c c g c g t t c g a g t a c t g g t t t t a g g g a a t t g c a c t c a a t g c g c a g c a a g g t g a c t c

2760 ori c g t c a g a c c c c g t a g a a a a g a t c a a a g g a t c t t c t t g a g a t c c t t t t t t t c t g c g c g t a a g c a g t c t g g g g c a t c t t t t c t a g t t t c c t a g a a g a a c t c t a g g a a a a a a a g a c g c g c a t t

2820 ori t c t g c t g c t t g c a a a c a a a a a a a c c a c c g c t a c c a g c g g t g g t t t g t t t g c c g g a t c a a g a g a c g a c g a a c g t t t g t t t t t t t g g t g g c g a t g g t c g c c a c c a a a c a a a c g g c c t a g t t c

2880 ori a g c t a c c a a c t c t t t t t c c g a a g g t a a c t g g c t t c a g c a g a g c g c a g a t a c c a a a t a c t g t c g a t g g t t g a g a a a a a g g c t t c c a t t g a c c g a a g t c g t c t c g c g t c t a t g g t t t a t g a c

2940 ori t c c t t c t a g t g t a g c c g t a g t t a g g c c a c c a c t t c a a g a a c t c t g t a g c a c c g c c t a c a t a g g a a g a t c a c a t c g g c a t c a a t c c g g t g g t g a a g t t c t t g a g a c a t c g t g g c g g a t g t a

AlwNI 3000 ori a c c t c g c t c t g c t a a t c c t g t t a c c a g t g g c t g c t g c c a g t g g c g a t a a g t c g t g t c t t a t g g a g c g a g a c g a t t a g g a c a a t g g t c a c c g a c g a c g g t c a c c g c t a t t c a g c a c a g a a t

3060 ori c c g g g t t g g a c t c a a g a c g a t a g t t a c c g g a t a a g g c g c a g c g g t c g g g c t g a a c g g g g g g g c c c a a c c t g a g t t c t g c t a t c a a t g g c c t a t t c c g c g t c g c c a g c c c g a c t t g c c c c c

ApaLI 3120 ori g t t c g t g c a c a c a g c c c a g c t t g g a g c g a a c g a c c t a c a c c g a a c t g a g a t a c c t a c a g c c a a g c a c g t g t g t c g g g t c g a a c c t c g c t t g c t g g a t g t g g c t t g a c t c t a t g g a t g t c g

3180 ori g t g a g c a t t g a g a a a g c g c c a c g c t t c c c g a a g g g a g a a a g g c g g a c a g g t a t c c g g t a a c a c t c g t a a c t c t t t c g c g g t g c g a a g g g c t t c c c t c t t t c c g c c t g t c c a t a g g c c a t t

3240 ori G G G A A A C G C C T G G T A T C pBR322ori-F g c g g c a g g g t c g g a a c a g g a g a g c g c a c g a g g g a g c t t c c a g g g g g a a a c g c c t g g t a t c c g c c g t c c c a g c c t t g t c c t c t c g c g t g c t c c c t c g a a g g t c c c c c t t t g c g g a c c a t a g

DrdI 3300 ori T T T pBR322ori-F t t t a t a g t c c t g t c g g g t t t c g c c a c c t c t g a c t t g a g c g t c g a t t t t t g t g a t g c t c g t a a a t a t c a g g a c a g c c c a a a g c g g t g g a g a c t g a a c t c g c a g c t a a a a a c a c t a c g a g c a

3360 ori c a g g g g g g c g g a g c c t a t g g a a a a a c g c c a g c a a c g c g g c c t t t t t a c g g t t c c t g g c c t g t c c c c c c g c c t c g g a t a c c t t t t t g c g g t c g t t g c g c c g g a a a a a t g c c a a g g a c c g g a

NspIPciI 3ʹ 5ʹ 3385 t t t g c t g g c c t t t t g c t c a c a t g t t a a a c g a c c g g a a a a c g a g t g t a c a a

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.