Addgene pDONR223_PIH1D1_WT_V5 Sequencing Result - Sequence Analyzer Skip to main content
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Sequence Analyzer: pDONR223_PIH1D1_WT_V5 Sequencing Result


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BstEII (3328) BfuAI - BspMI (3142) BglI (2864) NaeI (2842) NgoMIV (2840) BssHII (2765) ApoI (2746) BsaAI (2736) PaeR7I - PspXI - XhoI (2693) BciVI (2162) pBR322ori-F (2100 .. 2119) NspI (1963) PciI (1959) L4440 (1849 .. 1866) M13 Reverse (263 .. 279) M13 rev T7 (284 .. 303) EcoRV (306) BanI (425) MscI (446) BspHI (491) PasI (591) TspMI - XmaI (694) SmaI (696) PpuMI (714) PfoI * (725) PflMI * (726) BamHI (729) BspEI (809) BsaBI * (860) BstXI (988) BmgBI (1050) XmnI (1097) BbvCI - Bpu10I (1138) XcmI (1140) StuI (1199) AflII (1399) AhdI (1409) M13 Forward (1405 .. 1422) M13/pUC Forward (1414 .. 1436) HpaI (1456) BbsI (1516) AclI (1591) rrnB T2 terminator BspQI - SapI (1843) pDONR223_PIH1D1_WT_V5 3660 bp

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60 NGGSRETLTRSWNRSRM g t t a c c a c c g c t g c g t t c g g t c a a g g t t c t g g a c c a g t t g c g t g a g c g c a t a c g c t a c t t c a a t g g t g g c g a c g c a a g c c a g t t c c a a g a c c t g g t c a a c g c a c t c g c g t a t g c g a t g a a

120 g c a t t a c a g c t t a c g a a c c g a a c a g g c t t a t g t c c a c t g g g t t c g t g c c t t c a t c c g t t t c g t a a t g t c g a a t g c t t g g c t t g t c c g a a t a c a g g t g a c c c a a g c a c g g a a g t a g g c a a a

180 c c a c g g t g t g c g t c a c c c g g c a a c c t t g g g t a g c a g c g a a g t c g a g g c a t t t c t g t c c t g g g t g c c a c a c g c a g t g g g c c g t t g g a a c c c a t c g t c g c t t c a g c t c c g t a a a g a c a g g a c

240 *LN g c t g g t c t a g a g g a g g c a t g a t g a t a t a t t t t t a t c t t g t g c a a t g t a a c a t c a g a g a t t c g a c c a g a t c t c c t c c g t a c t a c t a t a t a a a a a t a g a a c a c g t t a c a t t g t a g t c t c t a a

300 M13 rev T7 promoter C A G G A A A C A G C T A T G A C M13 Reverse T A A T A C G A C T C A C T A T A T7 QSVPWLQWSVAIVMYYSESY t t g a g a c a c g g g c c a g a g c t g c c a g g a a a c a g c t a t g a c c a t g t a a t a c g a c t c a c t a t a a a c t c t g t g c c c g g t c t c g a c g g t c c t t t g t c g a t a c t g g t a c a t t a t g c t g a g t g a t a t

EcoRV 360 T7 promoter attL2 G G G T7 PIDAPHCIIIKNQSITVQEN g g g g a t a t c a g c t g g a t g g c a a a t a a t g a t t t t a t t t t g a c t g a t a g t g a c c t g t t c g t t c c c c t a t a g t c g a c c t a c c g t t t a t t a c t a a a a t a a a a c t g a c t a t c a c t g g a c a a g c a a

420 attL2 CCISLCHKRIIGVKYLFTPC g c a a c a a a t t g a t a a g c a a t g c t t t c t t a t a a t g c c a a c t t t g t a c a a g a a a g t t g g g c a c g t t g t t t a a c t a t t c g t t a c g a a a g a a t a t t a c g g t t g a a a c a t g t t c t t t c a a c c c g t

MscIBanI 480 SPVLLLPMAVMLQKRKRHFA a g a a g g c a c c a g c a g a a g c g g c a t g g c c a c c a t t a a t t g c t t t c t c t t c c g g t g g a a g g c t c t t c c g t g g t c g t c t t c g c c g t a c c g g t g g t a a t t a a c g a a a g a g a a g g c c a c c t t c c g

BspHI 540 AKSEHSNIQLPIYADLHYLQ t g c c t t g c t c t c a t g a g a g t t g a t c t g c a g c g g g a t a t a a g c g t c t a g a t g a t a c a g c t g a c g g a a c g a g a g t a c t c t c a a c t a g a c g t c g c c c t a t a t t c g c a g a t c t a c t a t g t c g a c

PasI 600 QPGGMVLRNEGIELSLGLAG c t g g g g g c c c c c c a t c a c c a g g c g g t t c t c c c c g a t c t c c a g c g a c a g c c c c a g g g c t c c g a c c c c c g g g g g g t a g t g g t c c g c c a a g a g g g g c t a g a g g t c g c t g t c g g g g t c c c g a g g

660 DLKPLDIEALLLDPAELWLN a t c c a g t t t g g g g a g g t c a a t t t c g g c c a a g a g g a g g t c g g g g g c t t c c a g c c a c a g g t t t a g g t c a a a c c c c t c c a g t t a a a g c c g g t t c t c c t c c a g c c c c c g a a g g t c g g t g t c c a a

PpuMITspMIXmaISmaI 720 LHPKEPGSEARGPAPTYLDG c a g g t g a g g c t t t t c a g g g c c t g a c t c a g c t c t c c c g g g g g c g g g c g t g t a c a g g t c c c c g t c c a c t c c g a a a a g t c c c g g a c t g a g t c g a g a g g g c c c c c g c c c g c a c a t g t c c a g g g g

PfoI*PflMI*BamHI 780 LEQIRPRQESRINQQSISGM c a g c t c c t g g a t c c g a g g a c g c t g c t c c g a g c g g a t g t t c t g c t g c g a g a t g g a g c c c a t g t c g a g g a c c t a g g c t c c t g c g a c g a g g c t c g c c t a c a a g a c g a c g c t c t a c c t c g g g t a

BspEI 840 FPRNKMMRWEPNLQLNYKDE g a a t g g c c g g t t c t t c a t c a t g c g c c a t t c c g g a t t c a g c t g c a a g t t g t a t t t g t c c t c c t t a c c g g c c a a g a a g t a g t a c g c g g t a a g g c c t a a g t c g a c g t t c a a c a t a a a c a g g a g

BsaBI* 900 LGERAITIVLERLFDSNQMR a a g g c c c t c c c t g g c g a t g g t g a t c a c g a g c t c c c g c a a g a a a t c g c t g t t c t g c a t c c t t t c c g g g a g g g a c c g c t a c c a c t a g t g c t c g a g g g c g t t c t t t a g c g a c a a g a c g t a g g a

960 RYFDSNVAVDYATCGQGKAD c c g g t a g a a g t c g c t g t t g a c a g c t a c g t c g t a g g c g g t a c a t c c c t g g c c t t t t g c a t c g g c c a t c t t c a g c g a c a a c t g t c g a t g c a g c a t c c g c c a t g t a g g g a c c g g a a a a c g t a g

BstXI 1020 LEAHPEGLSMPIRFGAQDEE c a g t t c t g c a t g a g g c t c t c c c a g a c t c a t g g g g a t g c g a a a c c c a g c t t g g t c c t c c t c g t c a a g a c g t a c t c c g a g a g g g t c t g a g t a c c c c t a c g c t t t g g g t c g a a c c a g g a g g a g

BmgBI 1080 LMQLLEEETVDAPPPISPSH t a g c a t c t g a a g c a g c t c c t c c t c g g t c a c g t c g g c g g g a g g a g g g a t a g a g g g g g a g t g a t c g t a g a c t t c g t c g a g g a g g a g c c a g t g c a g c c g c c c t c c t c c c t a t c t c c c c c t c a c

Bpu10IBbvCIXcmIXmnI 1140 CINIFVKGESSNTKICFGPQ g c a g a t g t t g a t g a a a a c c t t c c c t t c c g a g g a g t t g g t c t t t a t g c a g a a a c c a g g c t g c g t c t a c a a c t a c t t t t g g a a g g g a a g g c t c c t c a a c c a g a a a t a c g t c t t t g g t c c g a c

StuI 1200 PQIQTSEPRTTQAQQLEKSA a g g c t g g a t t t g t g t c g a t t c t g g t c t g g t t g t c t g g g c t t g c t g g a g c t c c t t c g a g g c t c c g a c c t a a a c a c a g c t a a g a c c a g a c c a a c a g a c c c g a a c g a c c t c g a g g a a g c t c c g

1260 QLLLEEFRASDAGIAEAESL c t g c a g c a g c a g c t c c t c a a a t c g c g c c g a a t c a g c a c c g a t c g c c t c c g c c t c g c t t a g g a c g t c g t c g t c g a g g a g t t t a g c g c g g c t t a g t c g t g g c t a g c g g a g g c g g a g c g a a t c

1320 attL1 ELGLLKPNAMGVKKYLTPM c t c c a g t c c c a g c a g c t t c g g g t t c g c c a t g c c a a c t t t t t t g t a c a a a g t t g g c a t t a t g a g g t c a g g g t c g t c g a a g c c c a a g c g g t a c g g t t g a a a a a a c a t g t t t c a a c c g t a a t a

1380 attL1 a a a a a a g c a t t g c t c a t c a a t t t g t t g c a a c g a a c a g g t c a c t a t c a g t c a a a a t a a a a t t t t t t t c g t a a c g a g t a g t t a a a c a a c g t t g c t t g t c c a g t g a t a g t c a g t t t t a t t t t a

AhdIAflII 1440 attL1 M13 fwd T G A C C G G C A G C A A A A T G T M13 Forward G C A A A A T G T T G C A G C A C T G A C C C M13/pUC Forward c a t t a t t t g g g g c c c g a g c t t a a g a c t g g c c g t c g t t t t a c a a c g t c g t g a c t g g g a a a a g t a a t a a a c c c c g g g c t c g a a t t c t g a c c g g c a g c a a a a t g t t g c a g c a c t g a c c c t t t t

HpaI 1500 rrnB T1 terminator c a t c c a t g c t a g c g t t a a c g c g a g a g t a g g g a a c t g c c a g g c a t c a a a t a a a a c g a a a g g g t a g g t a c g a t c g c a a t t g c g c t c t c a t c c c t t g a c g g t c c g t a g t t t a t t t t g c t t t c c

BbsI 1560 rrnB T1 terminator c t c a g t c g g a a g a c t g g g c c t t t c g t t t t a t c t g t t g t t t g t c g g t g a a c g c t c t c c t g a g a g t c a g c c t t c t g a c c c g g a a a g c a a a a t a g a c a a c a a a c a g c c a c t t g c g a g a g g a c t

AclI 1620 rrnB T1 terminator g t a g g a c a a a t c c g c c g g g a g c g g a t t t g a a c g t t g t g a a g c a a c g g c c c g g a g g g t g g c c a t c c t g t t t a g g c g g c c c t c g c c t a a a c t t g c a a c a c t t c g t t g c c g g g c c t c c c a c c g

1680 rrnB T2 terminator g g g c a g g a c g c c c g c c a t a a a c t g c c a g g c a t c a a a c t a a g c a g a a g g c c a t c c t g a c g g c c c g t c c t g c g g g c g g t a t t t g a c g g t c c g t a g t t t g a t t c g t c t t c c g g t a g g a c t g c c

1740 rrnB T2 terminator a t g g c c t t t t t g c g t t t c t a c a a a c t c t t c c t g g c t a g c g g t a c g c g t a t t a a t t g c g t t t a c c g g a a a a a c g c a a a g a t g t t t g a g a a g g a c c g a t c g c c a t g c g c a t a a t t a a c g c a a

1800 g c g c t c a c t g c c c g c t t t c c a g t c g g g a a a c c t g t c g t g c c a g c t g c a t t a a t g a a t c g g c g c g a g t g a c g g g c g a a a g g t c a g c c c t t t g g a c a g c a c g g t c g a c g t a a t t a c t t a g c c

BspQISapI 1860 G A G C G A G T G A C T L4440 c c a a c g c g c g g g g a g a g g c g g t t t g c g t a t t g g g c g c t c t t c c g c t t c c t c g c t c a c t g a g g t t g c g c g c c c c t c t c c g c c a a a c g c a t a a c c c g c g a g a a g g c g a a g g a g c g a g t g a c t

1920 G A G C G A L4440 c t c g c t g c g c t c g g t c g t t c g g c t g c g g c g a g c g g t a t c a g c t c a c t c a a a g g c g g t a a t g a g c g a c g c g a g c c a g c a a g c c g a c g c c g c t c g c c a t a g t c g a g t g a g t t t c c g c c a t t a

NspIPciI 1980 a c g g t t a t c c a c a g a a t c a g g g g a t a a c g c a g g a a a g a a c a t g t g a g c a a a a g g c c a g c a t g c c a a t a g g t g t c t t a g t c c c c t a t t g c g t c c t t t c t t g t a c a c t c g t t t t c c g g t c g t

2040 ori a a a g g c c a g g a a c c g t a a a a a g g c c g c g t t g c t g g c g t t t t t c c a t a g g c t c c g c c c c c c t t t c c g g t c c t t g g c a t t t t t c c g g c g c a a c g a c c g c a a a a a g g t a t c c g a g g c g g g g g g

2100 ori T pBR322ori-F t g a c g a g c a t c a c a a a a a t c g a c g c t c a a g t c a g a g g t g g c g a a a c c c g a c a g g a c t a t a a c t g c t c g t a g t g t t t t t a g c t g c g a g t t c a g t c t c c a c c g c t t t g g g c t g t c c t g a t a t

2160 ori T T C T A T G G T C C G C A A A G G G pBR322ori-F a a g a t a c c a g g c g t t t c c c c c t g g a a g c t c c c t c g t g c g c t c t c c t g t t c c g a c c c t g c c t t c t a t g g t c c g c a a a g g g g g a c c t t c g a g g g a g c a c g c g a g a g g a c a a g g c t g g g a c g g

BciVI 2220 ori g c t t a c c g g a t a c c t g t c c g c c t t t c t c c c t t c g g g a a g c g t g g c g c t t t c t c a t a g c t c c g a a t g g c c t a t g g a c a g g c g g a a a g a g g g a a g c c c t t c g c a c c g c g a a a g a g t a t c g a g

2280 ori a c g c t g t a g g t a t c t c a g t t c g g t g t a g g t c g t t c g c t c c a a g c t g g g c t g t g t g c a c g a t g c g a c a t c c a t a g a g t c a a g c c a c a t c c a g c a a g c g a g g t t c g a c c c g a c a c a c g t g c t

2340 ori a c c c c c c g t t c a g c c c g a c c g c t g c g c c t t a t c c g g t a a c t a t c g t c t t g a g t c c a a c c c t g g g g g g c a a g t c g g g c t g g c g a c g c g g a a t a g g c c a t t g a t a g c a g a a c t c a g g t t g g g

2400 ori g g t a a g a c a c g a c t t a t c g c c a c t g g c a g c a g c c a c t g g t a a c a g g a t t a g c a g a g c g a g c c a t t c t g t g c t g a a t a g c g g t g a c c g t c g t c g g t g a c c a t t g t c c t a a t c g t c t c g c t c

2460 ori g t a t g t a g g c g g t g c t a c a g a g t t c t t g a a g t g g t g g c c t a a c t a c g g c t a c a c t a g a a g c a t a c a t c c g c c a c g a t g t c t c a a g a a c t t c a c c a c c g g a t t g a t g c c g a t g t g a t c t t c

2520 ori a a c a g t a t t t g g t a t c t g c g c t c t g c t g a a g c c a g t t a c c t t c g g a a a a a g a g t t g g t a g t t g t c a t a a a c c a t a g a c g c g a g a c g a c t t c g g t c a a t g g a a g c c t t t t t c t c a a c c a t c

2580 ori c t c t t g a t c c g g c a a a c a a a c c a c c g c t g g t a g c g g t g g t t t t t t t g t t t g c a a g c a g c a g a g a a c t a g g c c g t t t g t t t g g t g g c g a c c a t c g c c a c c a a a a a a a c a a a c g t t c g t c g t

2640 ori g a t t a c g c g c a g a a a a a a a g g a t c t c a a g a a g a t c c t t t g a t c t t t t c t a c g g g g t c t g a c t a a t g c g c g t c t t t t t t t c c t a g a g t t c t t c t a g g a a a c t a g a a a a g a t g c c c c a g a c t

PaeR7IPspXIXhoI 2700 c g c t c a g t g g a a c g a c g c g t a a c t c a c g t t a a g g g a t t t t g g t c a t g g g t g g c t c g a g g g g c g a g t c a c c t t g c t g c g c a t t g a g t g c a a t t c c c t a a a a c c a g t a c c c a c c g a g c t c c c

ApoIBsaAI 2760 260 255 250 245 *KGVVKTIEGKVYHVFEELQ SmR *KGVVKTIEGKVYHVFEELQ t t a t t t g c c g a c t a c c t t g g t g a t c t c g c c t t t c a c g t a g t g g a c a a a t t c t t c c a a c t g a a t a a a c g g c t g a t g g a a c c a c t a g a g c g g a a a g t g c a t c a c c t g t t t a a g a a g g t t g a c

BssHII 2820 240 235 230 225 DARSALRDEEQGLYAQRAEL SmR DARSALRDEEQGLYAQRAEL a t c t g c g c g c g a g g c c a a g c g a t c t t c t t c t t g t c c a a g a t a a g c c t g t c t a g c t t c a a g t a g a c g c g c g c t c c g g t t c g c t a g a a g a a g a a c a g g t t c t a t t c g g a c a g a t c g a a g t t c

BglINgoMIVNaeI 2880 220 215 210 205 IVPQYQAPLREMAWDAAVDK SmR IVPQYQAPLREMAWDAAVDK t a t g a c g g g c t g a t a c t g g g c c g g c a g g c g c t c c a t t g c c c a g t c g g c a g c g a c a t c c t t a t a c t g c c c g a c t a t g a c c c g g c c g t c c g c g a g g t a a c g g g t c a g c c g t c g c t g t a g g a a

2940 200 195 190 185 PAIKGTVASYWIRSLTLVVN SmR PAIKGTVASYWIRSLTLVVN c g g c g c g a t t t t g c c g g t t a c t g c g c t g t a c c a a a t g c g g g a c a a c g t a a g c a c t a c a t t g c c g c g c t a a a a c g g c c a a t g a c g c g a c a t g g t t t a c g c c c t g t t g c a t t c g t g a t g t a a

3000 180 175 170 165 REDGAWDPPSNWLTLTENLA SmR REDGAWDPPSNWLTLTENLA t c g c t c a t c g c c a g c c c a g t c g g g c g g c g a g t t c c a t a g c g t t a a g g t t t c a t t t a g c g c a g c g a g t a g c g g t c g g g t c a g c c c g c c g c t c a a g g t a t c g c a a t t c c a a a g t a a a t c g c g

3060 160 155 150 145 EFLDQEPVPDFLEEAAPGVL SmR EFLDQEPVPDFLEEAAPGVL c t c a a a t a g a t c c t g t t c a g g a a c c g g a t c a a a g a g t t c c t c c g c c g c t g g a c c t a c c a a g a g t t t a t c t a g g a c a a g t c c t t g g c c t a g t t t c t c a a g g a g g c g g c g a c c t g g a t g g t t

3120 140 135 130 125 AVSHERAKTLLIALDIDITA SmR AVSHERAKTLLIALDIDITA g g c a a c g c t a t g t t c t c t t g c t t t t g t c a g c a a g a t a g c c a g a t c a a t g t c g a t c g t g g c c c g t t g c g a t a c a a g a g a a c g a a a a c a g t c g t t c t a t c g g t c t a g t t a c a g c t a g c a c c g

BspMIBfuAI 3180 120 115 110 105 PEFIGALIDNRQWEGFQLER SmR PEFIGALIDNRQWEGFQLER t g g c t c g a a g a t a c c t g c a a g a a t g t c a t t g c g c t g c c a t t c t c c a a a t t g c a g t t c g c g a c c g a g c t t c t a t g g a c g t t c t t a c a g t a a c g c g a c g g t a a g a g g t t t a a c g t c a a g c g c

3240 100 95 90 85 KAPYRWPIIDDHVVITVEVA SmR KAPYRWPIIDDHVVITVEVA c t t a g c t g g a t a a c g c c a c g g a a t g a t g t c g t c g t g c a c a a c a a t g g t g a c t t c t a c a g c g a a t c g a c c t a t t g c g g t g c c t t a c t a c a g c a g c a c g t g t t g t t a c c a c t g a a g a t g t c g

3300 80 75 70 65 RLIESEGPSASTELLDNILA SmR RLIESEGPSASTELLDNILA g c g g a g a a t c t c g c t c t c t c c a g g g g a a g c c g a a g t t t c c a a a a g g t c g t t g a t c a a a g c c g c c t c t t a g a g c g a g a g a g g t c c c c t t c g g c t t c a a a g g t t t t c c a g c a a c t a g t t t c g

BstEII 3360 60 55 50 45 RRTTEDLRVTVTVLLDIDSH SmR RRTTEDLRVTVTVLLDIDSH t c g c c g c g t t g t t t c a t c a a g c c t t a c g g t c a c c g t a a c c a g c a a a t c a a t a t c a c t g t g a g c g g c g c a a c a a a g t a g t t c g g a a t g c c a g t g g c a t t g g t c g t t t a g t t a t a g t g a c a c

3420 40 35 30 25 PKLGGDVASGYLHVALLTPE SmR PKLGGDVASGYLHVALLTPE t g g c t t c a g g c c g c c a t c c a c t g c g g a g c c g t a c a a a t g t a c g g c c a g c a a c g t c g g t t c a c c g a a g t c c g g c g g t a g g t g a c g c c t c g g c a t g t t t a c a t g c c g g t c g t t g c a g c c a a g

3480 20 15 10 5 LHREIVGVVESLQTSVEAIV SmR LHREIVGVVESLQTSVEAIV g a g a t g g c g c t c g a t g a c g c c a a c t a c c t c t g a t a g t t g a g t c g a t a c t t c g g c g a t c a c c t c t a c c g c g a g c t a c t g c g g t t g a t g g a g a c t a t c a a c t c a g c t a t g a a g c c g c t a g t g

3540 1 AERM SmR AERMINLKTKPRSGQQTVDN c g c t t c c c t c a t a a t g t t t a a c t t t g t t t t a g g g c g a c t g c c c t g c t g c g t a a c a t c g t t g c g a a g g g a g t a t t a c a a a t t g a a a c a a a a t c c c g c t g a c g g g a c g a c g c a t t g t a g c a a

3600 SSWLMLCRGVAYRAQQKSAR g c t g c t c c a t a a c a t c a a a c a t c g a c c c a c g g c g t a a c g c g c t t g c t g c t t g g a t g c c c g c g a c g a g g t a t t g t a g t t t g t a g c t g g g t g c c g c a t t g c g c g a a c g a c g a a c c t a c g g g c

3660 PMSQVGFFCDYCAMFVAVAG a g g c a t a g a c t g t a c c c c a a a a a a a c a g t c a t a a c a a g c c a t g a a a a c c g c c a c t g c g c c t c c g t a t c t g a c a t g g g g t t t t t t t g t c a g t a t t g t t c g g t a c t t t t g g c g g t g a c g c g g

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.