Addgene pDONR223_KRAS_WT Sequencing Result - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: pDONR223_KRAS_WT Sequencing Result


Map View

800 600 400 200 End (928) M13 Reverse (801 .. 817) T7 (777 .. 796) EcoRV (773) PvuII - MspA1I (768) BstBI (581) EcoRI (505) Bpu10I (481) AccI (466) AcuI - Eco57MI (430) XmnI (367) BmrI (322) EcoP15I (295) BfuAI - BspMI (258) BanI (87) Start (0) attB1 K-Ras attL2 T7 promoter M13 rev pDONR223_KRAS_WT 928 bp

Sequence View

Start (0) 60 t t t t a t t t t g a c t g a t a g t g a c c t g t t c g t t g c a a c a a a t t g a t g a g c a a t g c t t t t t t a a a a a t a a a a c t g a c t a t c a c t g g a c a a g c a a c g t t g t t t a a c t a c t c g t t a c g a a a a a a t

BanI 120 1 5 MTEYKLVVV attB1 K-Ras MPTLYKKVGTMTEYKLVVV t a a t g c c a a c t t t g t a c a a a a a a g t t g g c a c c a t g a c t g a a t a t a a a c t t g t g g t a g t t g a t t a c g g t t g a a a c a t g t t t t t t c a a c c g t g g t a c t g a c t t a t a t t t g a a c a c c a t c a a c

180 10 15 20 25 GAGGVGKSALTIQLIQNHFV K-Ras GAGGVGKSALTIQLIQNHFV g a g c t g g t g g c g t a g g c a a g a g t g c c t t g a c g a t a c a g c t a a t t c a g a a t c a t t t t g t g g c t c g a c c a c c g c a t c c g t t c t c a c g g a a c t g c t a t g t c g a t t a a g t c t t a g t a a a a c a c c

240 30 35 40 45 DEYDPTIEDSYRKQVVIDGE K-Ras DEYDPTIEDSYRKQVVIDGE a c g a a t a t g a t c c a a c a a t a g a g g a t t c c t a c a g g a a g c a a g t a g t a a t t g a t g g a g a a a t g c t t a t a c t a g g t t g t t a t c t c c t a a g g a t g t c c t t c g t t c a t c a t t a a c t a c c t c t t t

EcoP15IBspMIBfuAI 300 50 55 60 65 TCLLDILDTAGQEEYSAMRD K-Ras TCLLDILDTAGQEEYSAMRD c c t g t c t c t t g g a t a t t c t c g a c a c a g c a g g t c a a g a g g a g t a c a g t g c a a t g a g g g a c c g g a c a g a g a a c c t a t a a g a g c t g t g t c g t c c a g t t c t c c t c a t g t c a c g t t a c t c c c t g g

BmrI 360 70 75 80 85 QYMRTGEGFLCVFAINNTKS K-Ras QYMRTGEGFLCVFAINNTKS a g t a c a t g a g g a c t g g g g a g g g c t t t c t t t g t g t a t t t g c c a t a a a t a a t a c t a a a t c a t t c a t g t a c t c c t g a c c c c t c c c g a a a g a a a c a c a t a a a c g g t a t t t a t t a t g a t t t a g t a

XmnI 420 90 95 100 105 FEDIHHYREQIKRVKDSEDV K-Ras FEDIHHYREQIKRVKDSEDV t t g a a g a t a t t c a c c a t t a t a g a g a a c a a a t t a a a a g a g t t a a g g a c t c t g a a g a t g t a c a a c t t c t a t a a g t g g t a a t a t c t c t t g t t t a a t t t t c t c a a t t c c t g a g a c t t c t a c a t g

AccIEco57MIAcuI 480 110 115 120 125 PMVLVGNKCDLPSRTVDTKQ K-Ras PMVLVGNKCDLPSRTVDTKQ c t a t g g t c c t a g t a g g a a a t a a a t g t g a t t t g c c t t c t a g a a c a g t a g a c a c a a a a c a g g g a t a c c a g g a t c a t c c t t t a t t t a c a c t a a a c g g a a g a t c t t g t c a t c t g t g t t t t g t c c

EcoRIBpu10I 540 130 135 140 145 AQDLARSYGIPFIETSAKTR K-Ras AQDLARSYGIPFIETSAKTR c t c a g g a c t t a g c a a g a a g t t a t g g a a t t c c t t t t a t t g a a a c a t c a g c a a a g a c a a g a c g a g t c c t g a a t c g t t c t t c a a t a c c t t a a g g a a a a t a a c t t t g t a g t c g t t t c t g t t c t g

BstBI 600 150 155 160 165 QGVDDAFYTLVREIRKHKEK K-Ras QGVDDAFYTLVREIRKHKEK a g g g t g t t g a t g a t g c c t t c t a t a c a t t a g t t c g a g a a a t t c g a a a a c a t a a a g a a a a g a t c c c a c a a c t a c t a c g g a a g a t a t g t a a t c a a g c t c t t t a a g c t t t t g t a t t t c t t t t c t

660 170 175 180 185 MSKDGKKKKKKSKTKCVIM* K-Ras MSKDGKKKKKKSKTKCVIM* t g a g c a a a g a t g g t a a a a a g a a g a a a a a g a a g t c a a a g a c a a a g t g t g t a a t t a t g t a a t a c t c g t t t c t a c c a t t t t t c t t c t t t t t c t t c a g t t t c t g t t t c a c a c a t t a a t a c a t t a

720 attL2 t g c c a a c t t t c t t g t a c a a a g t t g g c a t t a t a a g a a a g c a t t g c t t a t c a a t t t g t t g c a a c g g t t g a a a g a a c a t g t t t c a a c c g t a a t a t t c t t t c g t a a c g a a t a g t t a a a c a a c g t

MspA1IPvuIIEcoRV 780 attL2 T7 promoter G G G A T7 a c g a a c a g g t c a c t a t c a g t c a a a a t a a a a t c a t t a t t t g c c a t c c a g c t g a t a t c c c c t t g c t t g t c c a g t g a t a g t c a g t t t t a t t t t a g t a a t a a a c g g t a g g t c g a c t a t a g g g g a

840 T7 promoter M13 rev T A T C A C T C A G C A T A A T T7 C A G T A T C G A C A A A G G A C M13 Reverse a t a g t g a g t c g t a t t a c a t g g t c a t a g c t g t t t c c t g g c a g c t c t g g c c c g t g t c t c a a a t a t c a c t c a g c a t a a t g t a c c a g t a t c g a c a a a g g a c c g t c g a g a c c g g g c a c a g a g t t t

900 a t c t c t g a t g t t a c a t t g c a c a a g a t a a a a a t a t a t c a t c a t g c c t c c t c t a g a c c a g c c t a g a g a c t a c a a t g t a a c g t g t t c t a t t t t t a t a t a g t a g t a c g g a g g a g a t c t g g t c g g

End (928) 928 a g g a c a g a a a t g c c t c g a c t t c g c t g c t t c c t g t c t t t a c g g a g c t g a a g c g a c g a

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.