Addgene Ii-Str_ManII-SBP-tagBFP - Sequence Analyzer Skip to main content
Addgene

Sequence Analyzer: Ii-Str_ManII-SBP-tagBFP


Map View

pBR322ori-F (7173 .. 7192) TK-pA-R (6264 .. 6283) Neo-F (5946 .. 5965) RsrII (5926) Neo-R (5336 .. 5355) CsiI - SexAI * (4999) pBABE 3' (4913 .. 4933) F1ori-R (4651 .. 4670) F1ori-F (4439 .. 4460) MluI (4296) EBV-rev (4265 .. 4284) BtsI - BtsαI (4249) SV40pA-R (4211 .. 4230) HpaI (4173) MfeI (4160) XbaI (4057) PacI (4052) AbsI - PspXI (4036) FseI (4026) SnaBI (340) CMV-F (519 .. 539) NheI (591) BmtI (595) AfeI (596) BspEI (614) BsmBI - Esp3I (616) BsgI (791) BbvCI (1216) SalI (1395) FspAI (1494) EcoNI (1542) PpuMI (1814) NotI (1879) ScaI (1951) BglII (2120) pMT2-F (2158 .. 2177) AclI (2256) IRES reverse (2400 .. 2417) PmlI (2549) IRES-F (2627 .. 2646) Acc65I (2674) KpnI (2678) BmgBI (2776) TspMI - XmaI (2818) SmaI (2820) AscI - BssHII (2826) PshAI (2915) BstEII (3098) EcoRI (3201) SpeI (3406) Ii-Str_ManII-SBP-tagBFP 7386 bp

Sequence View

5ʹ 3ʹ 60 t a g t t a t t a a t a g t a a t c a a t t a c g g g g t c a t t a g t t c a t a g c c c a t a t a t g g a g t t c c g a t c a a t a a t t a t c a t t a g t t a a t g c c c c a g t a a t c a a g t a t c g g g t a t a t a c c t c a a g g c

120 CMV enhancer c g t t a c a t a a c t t a c g g t a a a t g g c c c g c c t g g c t g a c c g c c c a a c g a c c c c c g c c c a t t g c a a t g t a t t g a a t g c c a t t t a c c g g g c g g a c c g a c t g g c g g g t t g c t g g g g g c g g g t a a

180 CMV enhancer g a c g t c a a t a a t g a c g t a t g t t c c c a t a g t a a c g c c a a t a g g g a c t t t c c a t t g a c g t c a c t g c a g t t a t t a c t g c a t a c a a g g g t a t c a t t g c g g t t a t c c c t g a a a g g t a a c t g c a g t

240 CMV enhancer a t g g g t g g a g t a t t t a c g g t a a a c t g c c c a c t t g g c a g t a c a t c a a g t g t a t c a t a t g c c t a c c c a c c t c a t a a a t g c c a t t t g a c g g g t g a a c c g t c a t g t a g t t c a c a t a g t a t a c g g

300 CMV enhancer a a g t a c g c c c c c t a t t g a c g t c a a t g a c g g t a a a t g g c c c g c c t g g c a t t a t g c c c a g t a t t c a t g c g g g g g a t a a c t g c a g t t a c t g c c a t t t a c c g g g c g g a c c g t a a t a c g g g t c a t

SnaBI 360 CMV enhancer c a t g a c c t t a t g g g a c t t t c c t a c t t g g c a g t a c a t c t a c g t a t t a g t c a t c g c t a t t a c g t a c t g g a a t a c c c t g a a a g g a t g a a c c g t c a t g t a g a t g c a t a a t c a g t a g c g a t a a t g

420 CMV enhancer CMV promoter c a t g g t g a t g c g g t t t t g g c a g t a c a t c a a t g g g c g t g g a t a g c g g t t t g a c t c a c g g g g g t a c c a c t a c g c c a a a a c c g t c a t g t a g t t a c c c g c a c c t a t c g c c a a a c t g a g t g c c c c

480 CMV promoter a t t t c c a a g t c t c c a c c c c a t t g a c g t c a a t g g g a g t t t g t t t t g g c a c c a a a a t c a a c g t a a a g g t t c a g a g g t g g g g t a a c t g c a g t t a c c c t c a a a c a a a a c c g t g g t t t t a g t t g c

540 CMV promoter C G C A A A T G G G C G G T A G G C G T G CMV-F g g a c t t t c c a a a a t g t c g t a a c a a c t c c g c c c c a t t g a c g c a a a t g g g c g g t a g g c g t g t c c t g a a a g g t t t t a c a g c a t t g t t g a g g c g g g g t a a c t g c g t t t a c c c g c c a t c c g c a c a

NheIBmtIAfeI 600 CMV promoter a c g g t g g g a g g t c t a t a t a a g c a g a g c t g g t t t a g t g a a c c g t c a g a t c c g c t a g c g c t a t g c c a c c c t c c a g a t a t a t t c g t c t c g a c c a a a t c a c t t g g c a g t c t a g g c g a t c g c g a t

BspEIBsmBIEsp3I 660 MHRRRA c c g g t c g t a c g t c t c c g g a t t c g a a t t a a t t c g g a t c c g t g a t g c a c a g g a g g a g a g c c a g g c c a g c a t g c a g a g g c c t a a g c t t a a t t a a g c c t a g g c a c t a c g t g t c c t c c t c t c g g t

720 RACREDQKPVIDDQRDLISN g g g c c t g t c g g g a a g a t c a a a a g c c a g t c a t c g a t g a t c a g c g c g a c c t t a t c t c c a a c a c c c g g a c a g c c c t t c t a g t t t t c g g t c a g t a g c t a c t a g t c g c g c t g g a a t a g a g g t t g t

780 NEQLPMLGRRPGAPESKCSR a t g a g c a a c t g c c c a t g c t g g g c c g g c g c c c t g g g g c c c c g g a g a g c a a g t g c a g c c g c g t a c t c g t t g a c g g g t a c g a c c c g g c c g c g g g a c c c c g g g g c c t c t c g t t c a c g t c g g c g c

BsgI 840 GALYTGFSILVTLLLAGQAT g a g c c c t g t a c a c a g g c t t t t c c a t c c t g g t g a c t c t g c t c c t c g c t g g c c a g g c c a c c a c t c g g g a c a t g t g t c c g a a a a g g t a g g a c c a c t g a g a c g a g g a g c g a c c g g t c c g g t g g t

900 TAYFLYQQQGRLDKLTVTSQ c c g c c t a c t t c c t g t a c c a g c a g c a g g g c c g g c t g g a c a a a c t g a c a g t c a c c t c c c a g a g g c g g a t g a a g g a c a t g g t c g t c g t c c c g g c c g a c c t g t t t g a c t g t c a g t g g a g g g t c t

960 NLQLEMDPSKDSKAQVSAAE a c c t g c a g c t c g a g a t g g a c c c t a g c a a a g a c t c a a a a g c t c a g g t g t c c g c t g c c g a g g t g g a c g t c g a g c t c t a c c t g g g a t c g t t t c t g a g t t t t c g a g t c c a c a g g c g a c g g c t c c

1020 AGITGTWYNQLGSTFIVTAG c t g g c a t t a c t g g a a c a t g g t a c a a t c a g c t c g g g a g c a c c t t t a t t g t g a c t g c t g g a g g a c c g t a a t g a c c t t g t a c c a t g t t a g t c g a g c c c t c g t g g a a a t a a c a c t g a c g a c c t c

1080 ADGALTGTYESAVGNAESRY c c g a t g g a g c c c t c a c c g g a a c a t a c g a a t c t g c t g t g g g a a a c g c c g a a t c a c g g t a c g g g c t a c c t c g g g a g t g g c c t t g t a t g c t t a g a c g a c a c c c t t t g c g g c t t a g t g c c a t g c

1140 VLTGRYDSAPATDGSGTALG t c c t c a c t g g c c g a t a c g a t a g t g c c c c t g c c a c c g a c g g a t c t g g g a c t g c c c t g g g a t a g g a g t g a c c g g c t a t g c t a t c a c g g g g a c g g t g g c t g c c t a g a c c c t g a c g g g a c c c t a

1200 WTVAWKNNYRNAHSATTWSG g g a c t g t c g c t t g g a a a a a c a a c t a c c g g a a t g c t c a t t c t g c c a c a a c a t g g a g t g g a c c c t g a c a g c g a a c c t t t t t g t t g a t g g c c t t a c g a g t a a g a c g g t g t t g t a c c t c a c c t g

BbvCI 1260 QYVGGAEARINTQWLLTSGT a g t a c g t g g g a g g c g c t g a g g c t a g a a t c a a t a c a c a g t g g c t g c t c a c a t c t g g c a c a a t c a t g c a c c c t c c g c g a c t c c g a t c t t a g t t a t g t g t c a c c g a c g a g t g t a g a c c g t g t t

1320 TEANAWKSTLVGHDTFTKVK c c g a g g c a a a t g c t t g g a a a t c c a c c c t g g t g g g a c a t g a c a c a t t c a c c a a a g t g a a a c g g c t c c g t t t a c g a a c c t t t a g g t g g g a c c a c c c t g t a c t g t g t a a g t g g t t t c a c t t t g

1380 PSAASIDAAKKAGVNNGNPL c c t c c g c c g c t t c a a t c g a t g c c g c c a a a a a a g c c g g a g t c a a c a a c g g c a a t c c t c t g g g g a g g c g g c g a a g t t a g c t a c g g c g g t t t t t t c g g c c t c a g t t g t t g c c g t t a g g a g a c c

SalI 1440 1 5 YPYDVPDYA (in frame with HA) LDLQ HA DAVQQVDYPYDVPDYALDLQ a t g c c g t c c a g c a g g t c g a c t a t c c g t a c g a c g t a c c a g a c t a c g c a c t c g a c c t g c a g c t a c g g c a g g t c g t c c a g c t g a t a g g c a t g c t g c a t g g t c t g a t g c g t g a g c t g g a c g t c g

FspAI 1500 (in frame with HA) LENLRMKLPKPPKPVSKMRM LENLRMKLPKPPKPVSKMRM t g g a g a a c c t g c g c a t g a a g c t t c c c a a g c c t c c c a a g c c t g t g a g c a a g a t g c g c a t g g a c c t c t t g g a c g c g t a c t t c g a a g g g t t c g g a g g g t t c g g a c a c t c g t t c t a c g c g t a c c

EcoNI 1560 (in frame with HA) ATPLLMHALPMGALPQGPMQ ATPLLMHALPMGALPQGPMQ c c a c c c c g c t g c t g a t g c a t g c g c t g c c c a t g g g a g c c c t g c c c c a g g g g c c c a t g c a g a g g t g g g g c g a c g a c t a c g t a c g c g a c g g g t a c c c t c g g g a c g g g g t c c c c g g g t a c g t c t

1620 (in frame with HA) NATKYGNMTEDHVMHLLQNA NATKYGNMTEDHVMHLLQNA a t g c c a c c a a g t a t g g c a a c a t g a c a g a g g a c c a t g t g a t g c a c c t g c t c c a g a a t g c t g t a c g g t g g t t c a t a c c g t t g t a c t g t c t c c t g g t a c a c t a c g t g g a c g a g g t c t t a c g a c

1680 (in frame with HA) DPLKVYPPLKGSFPENLRHL DPLKVYPPLKGSFPENLRHL a c c c c c t g a a g g t g t a c c c g c c a c t g a a g g g g a g c t t c c c g g a g a a c c t g a g a c a c c t t a t g g g g g a c t t c c a c a t g g g c g g t g a c t t c c c c t c g a a g g g c c t c t t g g a c t c t g t g g a a t

1740 (in frame with HA) KNTMETIDWKVFESWMHHWL KNTMETIDWKVFESWMHHWL a g a a c a c c a t g g a g a c c a t a g a c t g g a a g g t c t t t g a g a g c t g g a t g c a c c a t t g g c t c c t c t t g t g g t a c c t c t g g t a t c t g a c c t t c c a g a a a c t c t c g a c c t a c g t g g t a a c c g a g g

1800 (in frame with HA) LFEMSRHSLEQKPTDAPPKE LFEMSRHSLEQKPTDAPPKE t g t t t g a a a t g a g c a g g c a c t c c t t g g a g c a a a a g c c c a c t g a c g c t c c a c c g a a a g a g t a c a a a c t t t a c t c g t c c g t g a g g a a c c t c g t t t t c g g g t g a c t g c g a g g t g g c t t t c t c a

PpuMI 1860 (in frame with HA) SLELEDPSSGLGVTKQDLGP SLELEDPSSGLGVTKQDLGP c a c t g g a a c t g g a g g a c c c g t c t t c t g g g c t g g g t g t g a c c a a g c a g g a t c t g g g c c c a g g t g a c c t t g a c c t c c t g g g c a g a a g a c c c g a c c c a c a c t g g t t c g t c c t a g a c c c g g g t c

NotI 1920 VPM* VPM* t c c c c a t g t g a g g a t c c g c g g c c g c a t a g a t a a c t g a t c c a g t g t g c t g g a a t t a a t t c g a g g g g t a c a c t c c t a g g c g c c g g c g t a t c t a t t g a c t a g g t c a c a c g a c c t t a a t t a a g c

ScaI 1980 chimeric intron c t g t c t g c g a g g g c c a g c t g t t g g g g t g a g t a c t c c c t c t c a a a a g c g g g c a t g a c t t c t g a c a g a c g c t c c c g g t c g a c a a c c c c a c t c a t g a g g g a g a g t t t t c g c c c g t a c t g a a g a

2040 chimeric intron g c g c t a a g a t t g t c a g t t t c c a a a a a c g a g g a g g a t t t g a t a t t c a c c t g g c c c g c g g t g c g c g a t t c t a a c a g t c a a a g g t t t t t g c t c c t c c t a a a c t a t a a g t g g a c c g g g c g c c a c

2100 chimeric intron a t g c c t t t g a g g g t g g c c g c g t c c a t c t g g t c a g a a a a g a c a a t c t t t t t g t t g t c a a g c t a c g g a a a c t c c c a c c g g c g c a g g t a g a c c a g t c t t t t c t g t t a g a a a a a c a a c a g t t c g

BglII 2160 chimeric intron T T G pMT2-F t t g a g g t g t g g c a g g c t t g a g a t c t g g c c a t a c a c t t g a g t g a c a a t g a c a t c c a c t t t g a a c t c c a c a c c g t c c g a a c t c t a g a c c g g t a t g t g a a c t c a c t g t t a c t g t a g g t g a a a c

2220 chimeric intron C C T T T C T C T C C A C A G G T pMT2-F c c t t t c t c t c c a c a g g t g t c c a c t c c c a g g t c c a a c t g c a g g t c g a g c a t g c a t c t a g g g g g a a a g a g a g g t g t c c a c a g g t g a g g g t c c a g g t t g a c g t c c a g c t c g t a c g t a g a t c c c

AclI 2280 IRES2 c g g c c a a t t c c g c c c c t c t c c c t c c c c c c c c c c t a a c g t t a c t g g c c g a a g c c g c t t g g a g c c g g t t a a g g c g g g g a g a g g g a g g g g g g g g g g a t t g c a a t g a c c g g c t t c g g c g a a c c t

2340 IRES2 a t a a g g c c g g t g t g c g t t t g t c t a t a t g t t a t t t t c c a c c a t a t t g c c g t c t t t t g g c a a t a t t c c g g c c a c a c g c a a a c a g a t a t a c a a t a a a a g g t g g t a t a a c g g c a g a a a a c c g t t

2400 IRES2 G IRES reverse t g t g a g g g c c c g g a a a c c t g g c c c t g t c t t c t t g a c g a g c a t t c c t a g g g g t c t t t c c c c a c a c t c c c g g g c c t t t g g a c c g g g a c a g a a g a a c t g c t c g t a a g g a t c c c c a g a a a g g g g

2460 IRES2 A G A G C G G T T T C C T T A C G IRES reverse t c t c g c c a a a g g a a t g c a a g g t c t g t t g a a t g t c g t g a a g g a a g c a g t t c c t c t g g a a g c a g a g c g g t t t c c t t a c g t t c c a g a c a a c t t a c a g c a c t t c c t t c g t c a a g g a g a c c t t c g

2520 IRES2 t t c t t g a a g a c a a a c a a c g t c t g t a g c g a c c c t t t g c a g g c a g c g g a a c c c c c c a c c t g g a a g a a c t t c t g t t t g t t g c a g a c a t c g c t g g g a a a c g t c c g t c g c c t t g g g g g g t g g a c c

PmlI 2580 IRES2 c g a c a g g t g c c t c t g c g g c c a a a a g c c a c g t g t a t a a g a t a c a c c t g c a a a g g c g g c a c a g c t g t c c a c g g a g a c g c c g g t t t t c g g t g c a c a t a t t c t a t g t g g a c g t t t c c g c c g t g t

2640 IRES2 T G G C T C T C C T C A A G IRES-F a c c c c a g t g c c a c g t t g t g a g t t g g a t a g t t g t g g a a a g a g t c a a a t g g c t c t c c t c a a g t g g g g t c a c g g t g c a a c a c t c a a c c t a t c a a c a c c t t t c t c a g t t t a c c g a g a g g a g t t c

Acc65IKpnI 2700 IRES2 C G T A T T IRES-F c g t a t t c a a c a a g g g g c t g a a g g a t g c c c a g a a g g t a c c c c a t t g t a t g g g a t c t g a t c t g c a t a a g t t g t t c c c c g a c t t c c t a c g g g t c t t c c a t g g g g t a a c a t a c c c t a g a c t a g a

2760 IRES2 MLYMCLVEVKKTSRP g g g g c c t c g g t g c a c a t g c t t t a c a t g t g t t t a g t c g a g g t t a a a a a a a c g t c t a g g c c c c c c c g g a g c c a c g t g t a c g a a a t g t a c a c a a a t c a g c t c c a a t t t t t t t g c a g a t c c g g g

TspMIXmaISmaIBmgBI 2820 ATG IRES2 PEPRGRGFPLKNTMISLPQP c c c g a a c c a c g g g g a c g t g g t t t t c c t t t g a a a a a c a c g a t g a t a a g c t t g c c a c a a c c c g g g c t t g g t g c c c c t g c a c c a a a a g g a a a c t t t t t g t g c t a c t a t t c g a a c g g t g t t g g g

BssHIIAscI 2880 GRRAMKLSRQFTVFGSAIFC g g g a g g c g c g c c a t g a a g t t a a g t c g c c a g t t c a c c g t g t t t g g c a g c g c g a t c t t c t g c c c c t c c g c g c g g t a c t t c a a t t c a g c g g t c a a g t g g c a c a a a c c g t c g c g c t a g a a g a c g

PshAI 2940 VVIFSLYLMLDRGHLDYPRG g t c g t a a t c t t c t c a c t c t a c c t g a t g c t g g a c a g g g g t c a c t t g g a c t a c c c t c g g g g c c a g c a t t a g a a g a g t g a g a t g g a c t a c g a c c t g t c c c c a g t g a a c c t g a t g g g a g c c c c g

3000 PRQEGSFPQGQLSILQEKID c c g c g c c a g g a g g g c t c c t t t c c g c a g g g c c a g c t t t c a a t a t t g c a a g a a a a g a t t g a c g g c g c g g t c c t c c c g a g g a a a g g c g t c c c g g t c g a a a g t t a t a a c g t t c t t t t c t a a c t g

3060 HLERLLAENNEIISNIRDSV c a t t t g g a g c g t t t g c t c g c t g a g a a c a a c g a g a t t a t c t c a a a t a t c a g a g a c t c a g t c g t a a a c c t c g c a a a c g a g c g a c t c t t g t t g c t c t a a t a g a g t t t a t a g t c t c t g a g t c a g

BstEII 3120 INLSESVEDGPRGSPGNASQ a t c a a c c t g a g c g a g t c t g t g g a g g a c g g c c c g c g g g g g t c a c c a g g c a a c g c c a g c c a a t a g t t g g a c t c g c t c a g a c a c c t c c t g c c g g g c g c c c c c a g t g g t c c g t t g c g g t c g g t t

3180 GSIHLHSPQLALQADPRDCL g g c t c c a t c c a c c t c c a c t c g c c a c a g t t g g c c c t g c a g g c t g a c c c c a g a g a c t g t t t g c c g a g g t a g g t g g a g g t g a g c g g t g t c a a c c g g g a c g t c c g a c t g g g g t c t c t g a c a a a c

EcoRI 3240 1 5 10 MDEKTTGWRGG SBP DPTGRHRNSMDEKTTGWRGG g a t c c c a c c g g t c g c c a c c g g a a t t c c a t g g a c g a g a a g a c c a c t g g t t g g c g a g g t g g a c t a g g g t g g c c a g c g g t g g c c t t a a g g t a c c t g c t c t t c t g g t g a c c a a c c g c t c c a c c t

3300 15 20 25 30 HVVEGLAGELEQLRARLEHH SBP HVVEGLAGELEQLRARLEHH c a c g t t g t t g a a g g a c t g g c t g g g g a a c t t g a a c a a c t t c g t g c a c g a c t g g a g c a t c a c g t g c a a c a a c t t c c t g a c c g a c c c c t t g a a c t t g t t g a a g c a c g t g c t g a c c t c g t a g t g

3360 35 PQGQREP (in frame with SBP) PAGSELIKENMHM SBP PQGQREPPAGSELIKENMHM c c a c a a g g t c a a c g t g a a c c a c c t g c a g g t t c t g a a c t c a t c a a g g a a a a c a t g c a t a t g g g t g t t c c a g t t g c a c t t g g t g g a c g t c c a a g a c t t g a g t a g t t c c t t t t g t a c g t a t a c

SpeI 3420 (in frame with SBP) KLYMEGTVDNHHFKCTSEGE KLYMEGTVDNHHFKCTSEGE a a a c t g t a c a t g g a g g g a a c c g t g g a t a a t c a c c a c t t c a a g t g t a c t a g t g a g g g c g a g t t t g a c a t g t a c c t c c c t t g g c a c c t a t t a g t g g t g a a g t t c a c a t g a t c a c t c c c g c t c

3480 (in frame with SBP) GKPYEGTQTMRIKVVEGGPL GKPYEGTQTMRIKVVEGGPL g g c a a a c c t t a c g a g g g a a c a c a g a c c a t g a g g a t c a a a g t c g t c g a g g g c g g a c c t c t g c c g t t t g g a a t g c t c c c t t g t g t c t g g t a c t c c t a g t t t c a g c a g c t c c c g c c t g g a g a c

3540 (in frame with SBP) PFAFDILATSFLYGSKTFIN PFAFDILATSFLYGSKTFIN c c t t t c g c t t t c g a c a t t c t g g c c a c a t c c t t t c t g t a c g g c t c c a a a a c c t t c a t c a a c g g a a a g c g a a a g c t g t a a g a c c g g t g t a g g a a a g a c a t g c c g a g g t t t t g g a a g t a g t t g

3600 (in frame with SBP) HTQGIPDFFKQSFPEGFTWE HTQGIPDFFKQSFPEGFTWE c a c a c a c a g g g c a t c c c c g a t t t c t t c a a a c a g t c c t t c c c c g a g g g c t t c a c a t g g g a a g t g t g t g t c c c g t a g g g g c t a a a g a a g t t t g t c a g g a a g g g g c t c c c g a a g t g t a c c c t t

3660 (in frame with SBP) RVTTYEDGGVLTATQDTSLQ RVTTYEDGGVLTATQDTSLQ c g a g t g a c a a c c t a c g a g g a c g g a g g a g t g c t c a c c g c t a c t c a g g a t a c t a g c c t c c a g g c t c a c t g t t g g a t g c t c c t g c c t c c t c a c g a g t g g c g a t g a g t c c t a t g a t c g g a g g t c

3720 (in frame with SBP) DGCLIYNVKIRGVNFTSNGP DGCLIYNVKIRGVNFTSNGP g a t g g a t g t c t c a t c t a c a a c g t g a a a a t c c g a g g c g t g a a c t t c a c c t c a a a t g g c c c c c t a c c t a c a g a g t a g a t g t t g c a c t t t t a g g c t c c g c a c t t g a a g t g g a g t t t a c c g g g g

3780 (in frame with SBP) VMQKKTLGWEAFTETLYPAD VMQKKTLGWEAFTETLYPAD g t g a t g c a g a a a a a a a c t c t c g g c t g g g a g g c c t t t a c t g a a a c c c t g t a c c c t g c c g a t c a c t a c g t c t t t t t t t g a g a g c c g a c c c t c c g g a a a t g a c t t t g g g a c a t g g g a c g g c t a

3840 (in frame with SBP) GGLEGRNDMALKLVGGSHLI GGLEGRNDMALKLVGGSHLI g g c g g c c t g g a g g g g c g a a a t g a t a t g g c t c t g a a a c t c g t g g g a g g a t c t c a c c t c a t t c c g c c g g a c c t c c c c g c t t t a c t a t a c c g a g a c t t t g a g c a c c c t c c t a g a g t g g a g t a a

3900 (in frame with SBP) ANIKTTYRSKKPAKNLKMPG ANIKTTYRSKKPAKNLKMPG g c c a a c a t c a a a a c c a c c t a c c g g a g c a a a a a a c c t g c c a a a a a t c t g a a a a t g c c t g g c c g g t t g t a g t t t t g g t g g a t g g c c t c g t t t t t t g g a c g g t t t t t a g a c t t t t a c g g a c c g

3960 (in frame with SBP) VYYVDYRLERIKEANNETYV VYYVDYRLERIKEANNETYV g t c t a c t a c g t c g a t t a c c g g c t g g a a c g a a t c a a a g a g g c c a a c a a c g a a a c t t a c g t g c a g a t g a t g c a g c t a a t g g c c g a c c t t g c t t a g t t t c t c c g g t t g t t g c t t t g a a t g c a c

4020 (in frame with SBP) EQHEVAVARYCDLPSKLGHK EQHEVAVARYCDLPSKLGHK g a a c a g c a c g a a g t c g c c g t g g c t c g a t a c t g t g a c c t g c c t a g c a a a c t g g g a c a c a a a c t t g t c g t g c t t c a g c g g c a c c g a g c t a t g a c a c t g g a c g g a t c g t t t g a c c c t g t g t t t

XbaIPacIPspXIAbsIFseI 4080 GRP* GRP* g g c c g g c c t t a a g g c c t c g a g g g c c a a t t a a t t a a c t c t a g a t a a c t g a t c a t a a t c a g c c c g g c c g g a a t t c c g g a g c t c c c g g t t a a t t a a t t g a g a t c t a t t g a c t a g t a t t a g t c g

4140 c a t a c c a c a t t t g t a g a g g t t t t a c t t g c t t t a a a a a a c c t c c c a c a c c t c c c c c t g a a c g t a t g g t g t a a a c a t c t c c a a a a t g a a c g a a a t t t t t t g g a g g g t g t g g a g g g g g a c t t g

HpaIMfeI 4200 SV40 poly(A) signal c t g a a a c a t a a a a t g a a t g c a a t t g t t g t t g t t a a c t t g t t t a t t g c a g c t t a t a a t g g t g a c t t t g t a t t t t a c t t a c g t t a a c a a c a a c a a t t g a a c a a a t a a c g t c g a a t a t t a c c a

BtsαIBtsI 4260 SV40 poly(A) signal C G T T A T C G T A G T G T T T A A A G SV40pA-R t a c a a a t a a a g c a a t a g c a t c a c a a a t t t c a c a a a t a a a g c a t t t t t t t c a c t g c a t t c t a t g t t t a t t t c g t t a t c g t a g t g t t t a a a g t g t t t a t t t c g t a a a a a a a g t g a c g t a a g a

MluI 4320 SV40 poly(A) signal f1 ori G T G G T T T G T C C A A A C T C A T C EBV-rev a g t t g t g g t t t g t c c a a a c t c a t c a a t g t a t c t t a a c g c g t a a a t t g t a a g c g t t a a t a t t c a a c a c c a a a c a g g t t t g a g t a g t t a c a t a g a a t t g c g c a t t t a a c a t t c g c a a t t a t a

4380 f1 ori t t t g t t a a a a t t c g c g t t a a a t t t t t g t t a a a t c a g c t c a t t t t t t a a c c a a t a g g c c g a a a a c a a t t t t a a g c g c a a t t t a a a a a c a a t t t a g t c g a g t a a a a a a t t g g t t a t c c g g c t

4440 f1 ori G G F1ori-F a a t c g g c a a a a t c c c t t a t a a a t c a a a a g a a t a g a c c g a g a t a g g g t t g a g t g t t g t t c c t t a g c c g t t t t a g g g a a t a t t t a g t t t t c t t a t c t g g c t c t a t c c c a a c t c a c a a c a a g g

4500 f1 ori T C A A A C C T T G T T C T C A G G T G F1ori-F a g t t t g g a a c a a g a g t c c a c t a t t a a a g a a c g t g g a c t c c a a c g t c a a a g g g c g a a a a a c t c a a a c c t t g t t c t c a g g t g a t a a t t t c t t g c a c c t g a g g t t g c a g t t t c c c g c t t t t t g

4560 f1 ori c g t c t a t c a g g g c g a t g g c c c a c t a c g t g a a c c a t c a c c c t a a t c a a g t t t t t t g g g g t c g c a g a t a g t c c c g c t a c c g g g t g a t g c a c t t g g t a g t g g g a t t a g t t c a a a a a a c c c c a g

4620 f1 ori g a g g t g c c g t a a a g c a c t a a a t c g g a a c c c t a a a g g g a g c c c c c g a t t t a g a g c t t g a c g c t c c a c g g c a t t t c g t g a t t t a g c c t t g g g a t t t c c c t c g g g g g c t a a a t c t c g a a c t g c

4680 f1 ori A G G G A A G A A A G C G A A A G G A G F1ori-R g g g a a a g c c g g c g a a c g t g g c g a g a a a g g a a g g g a a g a a a g c g a a a g g a g c g g g c g c t a g c c c t t t c g g c c g c t t g c a c c g c t c t t t c c t t c c c t t c t t t c g c t t t c c t c g c c c g c g a t c

4740 f1 ori g g c g c t g g c a a g t g t a g c g g t c a c g c t g c g c g t a a c c a c c a c a c c c g c c g c g c t t a a t g c c c g c g a c c g t t c a c a t c g c c a g t g c g a c g c g c a t t g g t g g t g t g g g c g g c g c g a a t t a c g

4800 f1 ori AmpR promoter g c c g c t a c a g g g c g c g t c a g g t g g c a c t t t t c g g g g a a a t g t g c g c g g a a c c c c t a t t t g c g g c g a t g t c c c g c g c a g t c c a c c g t g a a a a g c c c c t t t a c a c g c g c c t t g g g g a t a a a c

4860 AmpR promoter t t t a t t t t t c t a a a t a c a t t c a a a t a t g t a t c c g c t c a t g a g a c a a t a a c c c t g a t a a a t a a a t a a a a a g a t t t a t g t a a g t t t a t a c a t a g g c g a g t a c t c t g t t a t t g g g a c t a t t t a

4920 AmpR promoter SV40 promoter SV40 enhancer C C T T A C A C pBABE 3' g c t t c a a t a a t a t t g a a a a a g g a a g a g t c c t g a g g c g g a a a g a a c c a g c t g t g g a a t g t g c g a a g t t a t t a t a a c t t t t t c c t t c t c a g g a c t c c g c c t t t c t t g g t c g a c a c c t t a c a c

4980 SV40 promoter SV40 enhancer A C A G T C A A T C C C A pBABE 3' t g t c a g t t a g g g t g t g g a a a g t c c c c a g g c t c c c c a g c a g g c a g a a g t a t g c a a a g c a t g a c a g t c a a t c c c a c a c c t t t c a g g g g t c c g a g g g g t c g t c c g t c t t c a t a c g t t t c g t a c

SexAI*CsiI 5040 SV40 promoter SV40 enhancer c a t c t c a a t t a g t c a g c a a c c a g g t g t g g a a a g t c c c c a g g c t c c c c a g c a g g c a g a a g t g t a g a g t t a a t c a g t c g t t g g t c c a c a c c t t t c a g g g g t c c g a g g g g t c g t c c g t c t t c a

5100 SV40 promoter SV40 enhancer SV40 ori a t g c a a a g c a t g c a t c t c a a t t a g t c a g c a a c c a t a g t c c c g c c c c t a a c t c c g c c c a t c t a c g t t t c g t a c g t a g a g t t a a t c a g t c g t t g g t a t c a g g g c g g g g a t t g a g g c g g g t a g

5160 SV40 promoter SV40 ori c c g c c c c t a a c t c c g c c c a g t t c c g c c c a t t c t c c g c c c c a t g g c t g a c t a a t t t t t t t t g g c g g g g a t t g a g g c g g g t c a a g g c g g g t a a g a g g c g g g g t a c c g a c t g a t t a a a a a a a a

5220 SV40 promoter SV40 ori a t t t a t g c a g a g g c c g a g g c c g c c t c g g c c t c t g a g c t a t t c c a g a a g t a g t g a g g a g g c t a a a t a c g t c t c c g g c t c c g g c g g a g c c g g a g a c t c g a t a a g g t c t t c a t c a c t c c t c c g

5280 SV40 promoter SV40 ori t t t t t t g g a g g c c t a g g c t t t t g c a a a g a t c g a t c a a g a g a c a g g a t g a g g a t c g t t t c g a a a a a a c c t c c g g a t c c g a a a a c g t t t c t a g c t a g t t c t c t g t c c t a c t c c t a g c a a a g c

5340 1 5 10 15 20 MIEQDGLHAGSPAAWVERLF NeoR/KanR 1 5 10 15 20 MIEQDGLHAGSPAAWVERLF NeoR/KanR G A T A A Neo-R MIEQDGLHAGSPAAWVERLF c a t g a t t g a a c a a g a t g g a t t g c a c g c a g g t t c t c c g g c c g c t t g g g t g g a g a g g c t a t t g t a c t a a c t t g t t c t a c c t a a c g t g c g t c c a a g a g g c c g g c g a a c c c a c c t c t c c g a t a a

5400 25 30 35 40 GYDWAQQTIGCSDAAVFRLS NeoR/KanR 25 30 35 40 GYDWAQQTIGCSDAAVFRLS NeoR/KanR G C C G A T A C T G A C C C G Neo-R GYDWAQQTIGCSDAAVFRLS c g g c t a t g a c t g g g c a c a a c a g a c a a t c g g c t g c t c t g a t g c c g c c g t g t t c c g g c t g t c g c c g a t a c t g a c c c g t g t t g t c t g t t a g c c g a c g a g a c t a c g g c g g c a c a a g g c c g a c a g

5460 45 50 55 60 AQGRPVLFVKTDLSGALNEL NeoR/KanR 45 50 55 60 AQGRPVLFVKTDLSGALNEL NeoR/KanR AQGRPVLFVKTDLSGALNEL a g c g c a g g g g c g c c c g g t t c t t t t t g t c a a g a c c g a c c t g t c c g g t g c c c t g a a t g a a c t t c g c g t c c c c g c g g g c c a a g a a a a a c a g t t c t g g c t g g a c a g g c c a c g g g a c t t a c t t g a

5520 65 70 75 80 QDEAARLSWLATTGVPCAAV NeoR/KanR 65 70 75 80 QDEAARLSWLATTGVPCAAV NeoR/KanR QDEAARLSWLATTGVPCAAV g c a a g a c g a g g c a g c g c g g c t a t c g t g g c t g g c c a c g a c g g g c g t t c c t t g c g c a g c t g t c g t t c t g c t c c g t c g c g c c g a t a g c a c c g a c c g g t g c t g c c c g c a a g g a a c g c g t c g a c a

5580 85 90 95 100 LDVVTEAGRDWLLLGEVPGQ NeoR/KanR 85 90 95 100 LDVVTEAGRDWLLLGEVPGQ NeoR/KanR LDVVTEAGRDWLLLGEVPGQ g c t c g a c g t t g t c a c t g a a g c g g g a a g g g a c t g g c t g c t a t t g g g c g a a g t g c c g g g g c a c g a g c t g c a a c a g t g a c t t c g c c c t t c c c t g a c c g a c g a t a a c c c g c t t c a c g g c c c c g t

5640 105 110 115 120 DLLSSHLAPAEKVSIMADAM NeoR/KanR 105 110 115 120 DLLSSHLAPAEKVSIMADAM NeoR/KanR DLLSSHLAPAEKVSIMADAM *RVKSRGLFYGDHSICH g g a t c t c c t g t c a t c t c a c c t t g c t c c t g c c g a g a a a g t a t c c a t c a t g g c t g a t g c a a t c c t a g a g g a c a g t a g a g t g g a a c g a g g a c g g c t c t t t c a t a g g t a g t a c c g a c t a c g t t a

5700 125 130 135 140 RRLHTLDPATCPFDHQAKHR NeoR/KanR 125 130 135 140 RRLHTLDPATCPFDHQAKHR NeoR/KanR RRLHTLDPATCPFDHQAKHR PPQMRKIRSGAWEVVLRFMA g c g g c g g c t g c a t a c g c t t g a t c c g g c t a c c t g c c c a t t c g a c c a c c a a g c g a a a c a t c g c g c c g c c g a c g t a t g c g a a c t a g g c c g a t g g a c g g g t a a g c t g g t g g t t c g c t t t g t a g c

5760 145 150 155 160 IERARTRMEAGLVDQDDLDE NeoR/KanR 145 150 155 160 IERARTRMEAGLVDQDDLDE NeoR/KanR IERARTRMEAGLVDQDDLDE DLSCTSPHFGTKDILIIQVF c a t c g a g c g a g c a c g t a c t c g g a t g g a a g c c g g t c t t g t c g a t c a g g a t g a t c t g g a c g a g t a g c t c g c t c g t g c a t g a g c c t a c c t t c g g c c a g a a c a g c t a g t c c t a c t a g a c c t g c t

5820 165 170 175 180 EHQGLAPAELFARLKASMPD NeoR/KanR 165 170 175 180 EHQGLAPAELFARLKASMPD NeoR/KanR EHQGLAPAELFARLKASMPD LMLPERWGFQEGPELRAHGV a g a g c a t c a g g g g c t c g c g c c a g c c g a a c t g t t c g c c a g g c t c a a g g c g a g c a t g c c c g a t c t c g t a g t c c c c g a g c g c g g t c g g c t t g a c a a g c g g t c c g a g t t c c g c t c g t a c g g g c t

5880 185 190 195 200 GEDLVVTHGDACLPNIMVEN NeoR/KanR 185 190 195 200 GEDLVVTHGDACLPNIMVEN NeoR/KanR GEDLVVTHGDACLPNIMVEN ALIEDHGMAIGAQRIDHHFI c g g c g a g g a t c t c g t c g t g a c c c a t g g c g a t g c c t g c t t g c c g a a t a t c a t g g t g g a a a a g c c g c t c c t a g a g c a g c a c t g g g t a c c g c t a c g g a c g a a c g g c t t a t a g t a c c a c c t t t t

RsrII 5940 205 210 215 220 GRFSGFIDCGRLGVADRYQD NeoR/KanR 205 210 215 220 GRFSGFIDCGRLGVADRYQD NeoR/KanR GRFSGFIDCGRLGVADRYQD AAKRSEDVTAPQTHRVAILV t g g c c g c t t t t c t g g a t t c a t c g a c t g t g g c c g g c t g g g t g t g g c g g a c c g c t a t c a g g a a c c g g c g a a a a g a c c t a a g t a g c t g a c a c c g g c c g a c c c a c a c c g c c t g g c g a t a g t c c t

6000 225 230 235 240 IALATRDIAEELGGEWADRF NeoR/KanR 225 230 235 240 IALATRDIAEELGGEWADRF NeoR/KanR C G T T G G C T A C C C G T G A T A T T Neo-F IALATRDIAEELGGEWADRF YRQSGTINSFLKAAFPSVAE c a t a g c g t t g g c t a c c c g t g a t a t t g c t g a a g a g c t t g g c g g c g a a t g g g c t g a c c g c t t g t a t c g c a a c c g a t g g g c a c t a t a a c g a c t t c t c g a a c c g c c g c t t a c c c g a c t g g c g a a

6060 245 250 255 260 LVLYGIAAPDSQRIAFYRLL NeoR/KanR 245 250 255 260 LVLYGIAAPDSQRIAFYRLL NeoR/KanR LVLYGIAAPDSQRIAFYRLL EHKVTDGSGIRLADGEIAKK c c t c g t g c t t t a c g g t a t c g c c g c t c c c g a t t c g c a g c g c a t c g c c t t c t a t c g c c t t c t g g a g c a c g a a a t g c c a t a g c g g c g a g g g c t a a g c g t c g c g t a g c g g a a g a t a g c g g a a g a

6120 265 DEFF* NeoR/KanR 265 DEFF* NeoR/KanR MTDQATPN DEFF* VLEESRSEPTRFSRGLSAWG t g a c g a g t t c t t c t g a g c g g g a c t c t g g g g t t c g a a a t g a c c g a c c a a g c g a c g c c c a a c a c t g c t c a a g a a g a c t c g c c c t g a g a c c c c a a g c t t t a c t g g c t g g t t c g c t g c g g g t t g

6180 LPSRDFDSTAAFYERLGFGI AM c t g c c a t c a c g a g a t t t c g a t t c c a c c g c c g c c t t c t a t g a a a g g t t g g g c t t c g g a a t c g a c g g t a g t g c t c t a a a g c t a a g g t g g c g g c g g a a g a t a c t t t c c a a c c c g a a g c c t t a g

6240 VFRDAGWMILQRGDLMLEFF g t t t t c c g g g a c g c c g g c t g g a t g a t c c t c c a g c g c g g g g a t c t c a t g c t g g a g t t c t t c c a a a a g g c c c t g c g g c c g a c c t a c t a g g a g g t c g c g c c c c t a g a g t a c g a c c t c a a g a a g

6300 A C T T T G T G C C T T C C T C T G T T TK-pA-R AHPRGRLTETRKETIPEGTR g c c c a c c c t a g g g g g a g g c t a a c t g a a a c a c g g a a g g a g a c a a t a c c g g a a g g a a c c c g c c g g g t g g g a t c c c c c t c c g a t t g a c t t t g t g c c t t c c t c t g t t a t g g c c t t c c t t g g g c g

6360 HSV TK poly(A) signal AMTAIKRQNKTHGVGSFVHK g c t a t g a c g g c a a t a a a a a g a c a g a a t a a a a c g c a c g g t g t t g g g t c g t t t g t t c a t a a a c g a t a c t g c c g t t a t t t t t c t g t c t t a t t t t g c g t g c c a c a a c c c a g c a a a c a a g t a t t t

6420 RGVRSQGWHSVDTPPRPHWG c g c g g g g t t c g g t c c c a g g g c t g g c a c t c t g t c g a t a c c c c a c c g a g a c c c c a t t g g g g c g c g c c c c a a g c c a g g g t c c c g a c c g t g a g a c a g c t a t g g g g t g g c t c t g g g g t a a c c c c g

6480 QYARVSSFSPPHPPSSGEGP c a a t a c g c c c g c g t t t c t t c c t t t t c c c c a c c c c a c c c c c c a a g t t c g g g t g a a g g c c c a g t t a t g c g g g c g c a a a g a a g g a a a a g g g g t g g g g t g g g g g g t t c a a g c c c a c t t c c g g g t

6540 GLAANVGAAGPAIASGYSYI g g g c t c g c a g c c a a c g t c g g g g c g g c a g g c c c t g c c a t a g c c t c a g g t t a c t c a t a t a t a c c c g a g c g t c g g t t g c a g c c c c g c c g t c c g g g a c g g t a t c g g a g t c c a a t g a g t a t a t a t

6600 L* c t t t a g a t t g a t t t a a a a c t t c a t t t t t a a t t t a a a a g g a t c t a g g t g a a g a t c c t t t t t g a a a t c t a a c t a a a t t t t g a a g t a a a a a t t a a a t t t t c c t a g a t c c a c t t c t a g g a a a a a

6660 g a t a a t c t c a t g a c c a a a a t c c c t t a a c g t g a g t t t t c g t t c c a c t g a g c g t c a g a c c c c c t a t t a g a g t a c t g g t t t t a g g g a a t t g c a c t c a a a a g c a a g g t g a c t c g c a g t c t g g g g

6720 ori g t a g a a a a g a t c a a a g g a t c t t c t t g a g a t c c t t t t t t t c t g c g c g t a a t c t g c t g c t t g c a t c t t t t c t a g t t t c c t a g a a g a a c t c t a g g a a a a a a a g a c g c g c a t t a g a c g a c g a a c

6780 ori c a a a c a a a a a a a c c a c c g c t a c c a g c g g t g g t t t g t t t g c c g g a t c a a g a g c t a c c a a c t g t t t g t t t t t t t g g t g g c g a t g g t c g c c a c c a a a c a a a c g g c c t a g t t c t c g a t g g t t g a

6840 ori c t t t t t c c g a a g g t a a c t g g c t t c a g c a g a g c g c a g a t a c c a a a t a c t g t c c t t c t a g t g g a a a a a g g c t t c c a t t g a c c g a a g t c g t c t c g c g t c t a t g g t t t a t g a c a g g a a g a t c a c

6900 ori t a g c c g t a g t t a g g c c a c c a c t t c a a g a a c t c t g t a g c a c c g c c t a c a t a c c t c g c t c t g a t c g g c a t c a a t c c g g t g g t g a a g t t c t t g a g a c a t c g t g g c g g a t g t a t g g a g c g a g a c

6960 ori c t a a t c c t g t t a c c a g t g g c t g c t g c c a g t g g c g a t a a g t c g t g t c t t a c c g g g t t g g a c g a t t a g g a c a a t g g t c a c c g a c g a c g g t c a c c g c t a t t c a g c a c a g a a t g g c c c a a c c t g

7020 ori t c a a g a c g a t a g t t a c c g g a t a a g g c g c a g c g g t c g g g c t g a a c g g g g g g t t c g t g c a c a a g t t c t g c t a t c a a t g g c c t a t t c c g c g t c g c c a g c c c g a c t t g c c c c c c a a g c a c g t g t

7080 ori c a g c c c a g c t t g g a g c g a a c g a c c t a c a c c g a a c t g a g a t a c c t a c a g c g t g a g c t a t g a g t c g g g t c g a a c c t c g c t t g c t g g a t g t g g c t t g a c t c t a t g g a t g t c g c a c t c g a t a c t

7140 ori g a a a g c g c c a c g c t t c c c g a a g g g a g a a a g g c g g a c a g g t a t c c g g t a a g c g g c a g g g t c c t t t c g c g g t g c g a a g g g c t t c c c t c t t t c c g c c t g t c c a t a g g c c a t t c g c c g t c c c a g

7200 ori G G G A A A C G C C T G G T A T C T T T pBR322ori-F g g a a c a g g a g a g c g c a c g a g g g a g c t t c c a g g g g g a a a c g c c t g g t a t c t t t a t a g t c c t c c t t g t c c t c t c g c g t g c t c c c t c g a a g g t c c c c c t t t g c g g a c c a t a g a a a t a t c a g g a

7260 ori g t c g g g t t t c g c c a c c t c t g a c t t g a g c g t c g a t t t t t g t g a t g c t c g t c a g g g g g g c g g c a g c c c a a a g c g g t g g a g a c t g a a c t c g c a g c t a a a a a c a c t a c g a g c a g t c c c c c c g c c

7320 ori a g c c t a t g g a a a a a c g c c a g c a a c g c g g c c t t t t t a c g g t t c c t g g c c t t t t g c t g g c c t t c g g a t a c c t t t t t g c g g t c g t t g c g c c g g a a a a a t g c c a a g g a c c g g a a a a c g a c c g g a

7380 t t t g c t c a c a t g t t c t t t c c t g c g t t a t c c c c t g a t t c t g t g g a t a a c c g t a t t a c c g c c a a a c g a g t g t a c a a g a a a g g a c g c a a t a g g g g a c t a a g a c a c c t a t t g g c a t a a t g g c g g

3ʹ 5ʹ 7386 a t g c a t t a c g t a

Restriction Enzymes

Instructions: By default, all cutters are shown. Filter on number of cut sites or search by enzyme name.

Filter

Features

Primers

BLAST

BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. Click on the buttons below to submit a BLAST search to NCBI. The results will appear in a new window. See your recent BLAST results on NCBI's website.

  • Nucleotide-Nucleotide BLAST (BLASTN)

  • Translated Nucleotide-Protein BLAST (BLASTX)

  • Sequence alignment using BLAST (BLAST2)

Sequence Analyzer Guide

Map

Displays a graphical map based on nucleotide sequence data labeled with restriction enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site)

To select a portion of sequence, click one location on the plasmid and then a second location to display the sequence between the two locations.

Sequence

Displays both strands of base paired nucleotide sequences with annotated enzymes, plasmid features, ORFs (theoretical open reading frames) and primers. Hovering over data labels will display additional information (e.g. cut site).

To select a portion of sequence, click one location on the sequence and then a second location to display the sequence between the two locations.

Enzymes

List of restriction enzymes that can cut a given nucleotide sequence. Table lists enzyme name and the sequence location of the cut.

Features

List of common features detected in a given nucleotide sequence. Table lists feature name, location, size, color used to indicate its position on the map, and direction (if relevant).

Primers

List of commonly used primers detected in a given nucleotide sequence. Table lists primer name, sequence, length, binding site location, and direction.

BLAST

Use Basic Local Alignment Search Tool (BLAST) via the NCBI website to determine similarity between a given sequence and nucleotide (BLASTN) or protein (BLASTX) sequence databases. Additionally, align a custom nucleotide sequence against a given sequence using BLAST2.

File Downloads

GenBank

File contains the nucleotide sequence and annotated features in GenBank flat file format. Open the file with a text editor or plasmid mapping software to view the sequence.

SnapGene

File contains the nucleotide sequence and enhanced annotations from SnapGene Server. Open the file with SnapGene software or the free Viewer to view the plasmid map, sequence, and perform additional sequence analysis.