A fluorescent reporter for quantification and enrichment of DNA editing by APOBEC-Cas9 or cleavage by Cas9 in living cells.
St Martin A, Salamango D, Serebrenik A, Shaban N, Brown WL, Donati F, Munagala U, Conticello SG, Harris RS
Nucleic Acids Res. 2018 May 9. pii: 4994269. doi: 10.1093/nar/gky332. PubMed Article
St Martin A, Salamango D, Serebrenik A, Shaban N, Brown WL, Donati F, Munagala U, Conticello SG, Harris RS
Nucleic Acids Res. 2018 May 9. pii: 4994269. doi: 10.1093/nar/gky332. PubMed Article
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 109425 | A3Ai-Cas9n-UGI-NLS | Expresses human APOBEC3A containing an L1 intron fused to Cas9n, Uracil DNA Glycosylase Inhibitor, with a nuclear localization signal. |
| 109426 | A3Bi-ctd-Cas9n-UGI-NLS | Expresses the C-terminal catalytic domain of human APOBEC3B containing an L1 intron fused to Cas9n, Uracil DNA Glycosylase Inhibitor, with a nuclear localization signal. |
| 109427 | plenti-CMV-mCherry-T2A-GFP | A lentiviral backbone expressing mCherry-T2A-eGFP off of a CMV promoter. |
| 109428 | ACE Reporter (pLenti-CMV-mCherry (+43) -T2A-eGFP) | A lentiviral backbone expressing mCherry with a 43 basepair insert and eGFP off of a CMV promoter. A reporter for both Cas9 nuclease and APOBEC-mediated base-editing activity. |
| 109429 | A3Bi-ctd E255A -Cas9n-UGI-NLS | Expresses the C-terminal catalytically inactive mutant of human APOBEC3B containing an L1 intron fused to Cas9n, Uracil DNA Glycosylase Inhibitor, with a nuclear localization signal. |
| 109430 | A3Ai E72A-Cas9n-UGI-NLS | Expresses catalytically inactive human APOBEC3A with an L1 intron fused to Cas9n, Uracil DNA Glycosylase Inhibitor, with a nuclear localization signal. |
| 109431 | mCherry Codon 59 sgRNA | MLM3636 backbone containing a gRNA that guides Cas9 to codon 59 of mCherry in the ACE reporter |
| 109432 | Non-specific sgRNA | MLM3636 backbone containing a gRNA that does not bind to any sequence in the human genome. |