A high-throughput method to identify trans-activation domains within transcription factor sequences. | Arnold CD, Nemcko F, Woodfin AR, Wienerroither S, Vlasova A, Schleiffer A, Pagani M, Rath M, Stark A | EMBO J. 2018 Aug 15;37(16). pii: embj.201798896. doi: 10.15252/embj.201798896. Epub 2018 Jul 13. |
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation. | Zabidi MA, Arnold CD, Schernhuber K, Pagani M, Rath M, Frank O, Stark A | Nature. 2015 Feb 26;518(7540):556-9. doi: 10.1038/nature13994. Epub 2014 Dec 15. |
Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution. | Arnold CD, Zabidi MA, Pagani M, Rath M, Schernhuber K, Kazmar T, Stark A | Nat Biotechnol. 2016 Dec 26. doi: 10.1038/nbt.3739. |
Genome-wide quantitative enhancer activity maps identified by STARR-seq. | Arnold CD, Gerlach D, Stelzer C, Boryn LM, Rath M, Stark A | Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17. |
Proteome-scale tagging and functional screening in mammalian cells by ORFtag | (unpublished) | |
Resolving systematic errors in widely used enhancer activity assays in human cells. | Muerdter F, Boryn LM, Woodfin AR, Neumayr C, Rath M, Zabidi MA, Pagani M, Haberle V, Kazmar T, Catarino RR, Schernhuber K, Arnold CD, Stark A | Nat Methods. 2017 Dec 11. pii: nmeth.4534. doi: 10.1038/nmeth.4534. |
Transcriptional cofactors display specificity for distinct types of core promoters. | Haberle V, Arnold CD, Pagani M, Rath M, Schernhuber K, Stark A | Nature. 2019 Jun;570(7759):122-126. doi: 10.1038/s41586-019-1210-7. Epub 2019 May 15. |
Transcriptional regulators form diverse groups with context-dependent regulatory functions. | Stampfel G, Kazmar T, Frank O, Wienerroither S, Reiter F, Stark A | Nature. 2015 Nov 9. doi: 10.1038/nature15545. |