Jeremy Wilusz Lab Materials

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Title	Authors	Publication
A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs.	Huang C, Liang D, Tatomer DC, Wilusz JE	Genes Dev. 2018 May 17. pii: gad.314856.118. doi: 10.1101/gad.314856.118.
An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3' ends.	Xiao MS, Wilusz JE	Nucleic Acids Res. 2019 Jul 3. pii: 5527976. doi: 10.1093/nar/gkz576.
Circular RNA CircFndc3b modulates cardiac repair after myocardial infarction via FUS/VEGF-A axis.	Garikipati VNS, Verma SK, Cheng Z, Liang D, Truongcao MM, Cimini M, Yue Y, Huang G, Wang C, Benedict C, Tang Y, Mallaredy V, Ibetti J, Grisanti L, Schumacher SM, Gao E, Rajan S, Wilusz JE, Goukassian D, Houser SR, Koch WJ, Kishore R	Nat Commun. 2019 Sep 20;10(1):4317. doi: 10.1038/s41467-019-11777-7.
Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.	Kramer MC, Liang D, Tatomer DC, Gold B, March ZM, Cherry S, Wilusz JE	Genes Dev. 2015 Oct 8.
CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells.	Ai Y, Liang D, Wilusz JE	Nucleic Acids Res. 2022 Mar 4. pii: 6542487. doi: 10.1093/nar/gkac159.
IntS6 and the Integrator phosphatase module tune the efficiency of select premature transcription termination events.	Fujiwara R, Zhai SN, Liang D, Shah AP, Tracey M, Ma XK, Fields CJ, Mendoza-Figueroa MS, Meline MC, Tatomer DC, Yang L, Wilusz JE	Mol Cell. 2023 Nov 14:S1097-2765(23)00902-4. doi: 10.1016/j.molcel.2023.10.035.
Ribosome queuing enables non-AUG translation to be resistant to multiple protein synthesis inhibitors.	Kearse MG, Goldman DH, Choi J, Nwaezeapu C, Liang D, Green KM, Goldstrohm AC, Todd PK, Green R, Wilusz JE	Genes Dev. 2019 Jun 6. pii: gad.324715.119. doi: 10.1101/gad.324715.119.
Short intronic repeat sequences facilitate circular RNA production.	Liang D, Wilusz JE	Genes Dev. 2014 Oct 3. pii: gad.251926.114.
The Integrator complex cleaves nascent mRNAs to attenuate transcription.	Tatomer DC, Elrod ND, Liang D, Xiao MS, Jiang JZ, Jonathan M, Huang KL, Wagner EJ, Cherry S, Wilusz JE	Genes Dev. 2019 Sep 17. pii: gad.330167.119. doi: 10.1101/gad.330167.119.
The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting.	Liang D, Tatomer DC, Luo Z, Wu H, Yang L, Chen LL, Cherry S, Wilusz JE	Mol Cell. 2017 Nov 9. pii: S1097-2765(17)30835-3. doi: 10.1016/j.molcel.2017.10.034.

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	ID	Plasmid	Gene/Insert	Vector Type	Publication
100.467.623261.129020	129020	pcDNA3.1(+) eGFP	eGFP	Mammalian Expression	An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3' ends. Nucleic Acids Res. 2019 Jul 3. pii: 5527976. doi: 10.1093/nar/gkz576.
100.10.518932.60648	60648	pcDNA3.1(+) CircRNA Mini Vector	ZKSCAN1 (ZKSCAN1 Human)	Mammalian Expression	Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014 Oct 3. pii: gad.251926.114.
100.1.766851.69901	69901	pcDNA3.1(+) ZKSCAN1 MCS Exon Vector	ZKSCAN1 (ZKSCAN1 Human)	Mammalian Expression	Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015 Oct 8.
50.2.600969.69909	69909	pcDNA3.1(+) ZKSCAN1 MCS-WT Split GFP + Sense IRES	ZKSCAN1, GFP (ZKSCAN1 Human)	Mammalian Expression	Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015 Oct 8.
50.1.376112.69893	69893	pcDNA3.1(+) Laccase2 MCS Exon Vector	Laccase2 (stw Fly)	Mammalian Expression	Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015 Oct 8.
20.57.463671.176301	176301	pcDNA3.1(+) mCherry	mCherry	Mammalian Expression	CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells. Nucleic Acids Res. 2022 Mar 4. pii: 6542487. doi: 10.1093/nar/gkac159.
20.13.962845.127331	127331	pcDNA3.1(+)/AUG-DAP5-3XFLAG	DAP5 (EIF4G2 Human)	Mammalian Expression	Ribosome queuing enables non-AUG translation to be resistant to multiple protein synthesis inhibitors. Genes Dev. 2019 Jun 6. pii: gad.324715.119. doi: 10.1101/gad.324715.119.
20.0.990952.69908	69908	pcDNA3.1(+) ZKSCAN1 MCS-WT Split GFP	ZKSCAN1, GFP (ZKSCAN1 Human)	Mammalian Expression	Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015 Oct 8.
20.0.706099.69906	69906	pcDNA3.1(+) ZKSCAN1 MCS-ciRS7 Exon	ciRS7 (CDR1-AS Human)	Mammalian Expression	Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015 Oct 8.
20.0.322228.60649	60649	pcDNA3.1(+) CircRNA Mini Vector-ZKSCAN1 nt 548-1047	ZKSCAN1 (ZKSCAN1 Human)	Mammalian Expression	Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014 Oct 3. pii: gad.251926.114.