RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations.
Ishikawa M, Sugino S, Masuda Y, Tarumoto Y, Seto Y, Taniyama N, Wagai F, Yamauchi Y, Kojima Y, Kiryu H, Yusa K, Eiraku M, Mochizuki A
Commun Biol. 2023 Dec 28;6(1):1290. doi: 10.1038/s42003-023-05594-4.
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Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 211954 | pKLV2-U6gRNA5(AAVS1-1)-PGKpuroBFP-W | Express safe-cutter control gRNA with puro and BFP |
| 211955 | pKLV2-U6gRNA5(AAVS1-2)-PGKpuroBFP-W | Express safe-cutter control gRNA with puro and BFP |
| 211956 | pKLV2-U6gRNA5(CTRL00509)-PGKpuroBFP-W | Express non-cutter control gRNA with puro and BFP |
| 211957 | pKLV2-U6gRNA5(CTRL00626)-PGKpuroBFP-W | Express non-cutter control gRNA with puro and BFP |
| 211958 | pKLV2-U6gRNA5(ETS2_5-2)-PGKpuroBFP-W | Express gRNA against ETS2 with puro and BFP |
| 211959 | pKLV2-U6gRNA5(ETS2_5-5)-PGKpuroBFP-W | Express gRNA against ETS2 with puro and BFP |
| 211960 | pKLV2-U6gRNA5(ETV4_5-1)-PGKpuroBFP-W | Express gRNA against ETV4 with puro and BFP |
| 211961 | pKLV2-U6gRNA5(ETV4_5-2)-PGKpuroBFP-W | Express gRNA against ETV4 with puro and BFP |
| 211962 | pKLV2-U6gRNA5(FOXH1_5-2)-PGKpuroBFP-W | Express gRNA against FOXH1 with puro and BFP |
| 211963 | pKLV2-U6gRNA5(FOXH1_5-4)-PGKpuroBFP-W | Express gRNA against FOXH1 with puro and BFP |
| 211964 | pKLV2-U6gRNA5(ID1_5-2)-PGKpuroBFP-W | Express gRNA against ID1 with puro and BFP |
| 211965 | pKLV2-U6gRNA5(ID1_5-5)-PGKpuroBFP-W | Express gRNA against ID1 with puro and BFP |
| 211966 | pKLV2-U6gRNA5(JARID2_5-4)-PGKpuroBFP-W | Express gRNA against JARID2 with puro and BFP |
| 211967 | pKLV2-U6gRNA5(JARID2_5-5)-PGKpuroBFP-W | Express gRNA against JARID2 with puro and BFP |
| 211968 | pKLV2-U6gRNA5(LIN28A_5-3)-PGKpuroBFP-W | Express gRNA against LIN28A with puro and BFP |
| 211969 | pKLV2-U6gRNA5(LIN28A_5-4)-PGKpuroBFP-W | Express gRNA against LIN28A with puro and BFP |
| 211970 | pKLV2-U6gRNA5(MYC_2)-PGKpuroBFP-W | Express gRNA against MYC with puro and BFP |
| 211971 | pKLV2-U6gRNA5(MYC_7)-PGKpuroBFP-W | Express gRNA against MYC with puro and BFP |
| 211972 | pKLV2-U6gRNA5(MYCN_5-3)-PGKpuroBFP-W | Express gRNA against MYCN with puro and BFP |
| 211973 | pKLV2-U6gRNA5(MYCN_5-4)-PGKpuroBFP-W | Express gRNA against MYCN with puro and BFP |
| 211974 | pKLV2-U6gRNA5(NANOG_g1)-PGKpuroBFP-W | Express gRNA against NANOG with puro and BFP |
| 211975 | pKLV2-U6gRNA5(NANOG_g2)-PGKpuroBFP-W | Express gRNA against NANOG with puro and BFP |
| 211976 | pKLV2-U6gRNA5(NR5A2_5-2)-PGKpuroBFP-W | Express gRNA against NR5A2 with puro and BFP |
| 211977 | pKLV2-U6gRNA5(NR5A2_5-5)-PGKpuroBFP-W | Express gRNA against NR5A2 with puro and BFP |
| 211978 | pKLV2-U6gRNA5(PDLIM1_5-1)-PGKpuroBFP-W | Express gRNA against PDLIM1 with puro and BFP |
| 211979 | pKLV2-U6gRNA5(PDLIM1_Bru)-PGKpuroBFP-W | Express gRNA against PDLIM1 with puro and BFP |
| 211980 | pKLV2-U6gRNA5(POU5F1_g1)-PGKpuroBFP-W | Express gRNA against POU5F1 with puro and BFP |
| 211981 | pKLV2-U6gRNA5(POU5F1_g15-14)-PGKpuroBFP-W | Express gRNA against POU5F1 with puro and BFP |
| 211982 | pKLV2-U6gRNA5(PRDM14_v32_7-4)-PGKpuroBFP-W | Express gRNA against PRDM14 with puro and BFP |
| 211983 | pKLV2-U6gRNA5(PRDM14_v32_7-6)-PGKpuroBFP-W | Express gRNA against PRDM14 with puro and BFP |
| 211984 | pKLV2-U6gRNA5(RUNX1T1 g3)-PGKpuroBFP-W | Express gRNA against RUNX1T1 with puro and BFP |
| 211985 | pKLV2-U6gRNA5(RUNX1T1 g7-5)-PGKpuroBFP-W | Express gRNA against RUNX1T1 with puro and BFP |
| 211986 | pKLV2-U6gRNA5(SOX2_v32_7-4)-PGKpuroBFP-W | Express gRNA against SOX2 with puro and BFP |
| 211987 | pKLV2-U6gRNA5(SOX2_v32_7-5)-PGKpuroBFP-W | Express gRNA against SOX2 with puro and BFP |
| 211988 | pKLV2-U6gRNA5(TRIM24_4)-PGKpuroBFP-W | Express gRNA against TRIM24 with puro and BFP |
| 211989 | pKLV2-U6gRNA5(TRIM24_5-4)-PGKpuroBFP-W | Express gRNA against TRIM24 with puro and BFP |
| 211990 | pKLV2-U6gRNA5(TRIM25_5-2)-PGKpuroBFP-W | Express gRNA against TRIM25 with puro and BFP |
| 211991 | pKLV2-U6gRNA5(TRIM25_v3_6-4)-PGKpuroBFP-W | Express gRNA against TRIM25 with puro and BFP |
| 211992 | pKLV2-U6gRNA5(VENTX_5-4)-PGKpuroBFP-W | Express gRNA against VENTX with puro and BFP |
| 211993 | pKLV2-U6gRNA5(VENTX_5-5)-PGKpuroBFP-W | Express gRNA against VENTX with puro and BFP |
| 211994 | pKLV2-U6gRNA5(ZIC2_5-4)-PGKpuroBFP-W | Express gRNA against ZIC2 with puro and BFP |
| 211995 | pKLV2-U6gRNA5(ZIC2_5-5)-PGKpuroBFP-W | Express gRNA against ZIC2 with puro and BFP |
| 211996 | pKLV2-U6gRNA5(ZIC3_5-3)-PGKpuroBFP-W | Express gRNA against ZIC3 with puro and BFP |
| 211997 | pKLV2-U6gRNA5(ZIC3_5-5)-PGKpuroBFP-W | Express gRNA against ZIC3 with puro and BFP |
| 211998 | pKLV2-U6gRNA5(ZNF398_5-2)-PGKpuroBFP-W | Express gRNA against ZNF398 with puro and BFP |
| 211999 | pKLV2-U6gRNA5(ZNF398_5-5)-PGKpuroBFP-W | Express gRNA against ZNF398 with puro and BFP |
| 212000 | pKLV2-U6gRNA5(ZNF649_5-1)-PGKpuroBFP-W | Express gRNA against ZNF649 with puro and BFP |
| 212001 | pKLV2-U6gRNA5(ZNF649_5-5)-PGKpuroBFP-W | Express gRNA against ZNF649 with puro and BFP |
| 212002 | pKLV2-U6gRNA5(ZNF90_5-3)-PGKpuroBFP-W | Express gRNA against ZNF90 with puro and BFP |
| 212003 | pKLV2-U6gRNA5(ZNF90_5-5)-PGKpuroBFP-W | Express gRNA against ZNF90 with puro and BFP |