hSTARR-seq_ORI vector Citations (20)

Originally described in: Resolving systematic errors in widely used enhancer activity assays in human cells.
Muerdter F, Boryn LM, Woodfin AR, Neumayr C, Rath M, Zabidi MA, Pagani M, Haberle V, Kazmar T, Catarino RR, Schernhuber K, Arnold CD, Stark A Nat Methods. 2017 Dec 11. pii: nmeth.4534. doi: 10.1038/nmeth.4534. PubMed Journal

---

Articles Citing hSTARR-seq_ORI vector

Articles
STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries. Neumayr C, Pagani M, Stark A, Arnold CD. Curr Protoc Mol Biol. 2019 Sep;128(1):e105. doi: 10.1002/cpmb.105. PubMed
Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression. Lin L, Holmes B, Shen MW, Kammeron D, Geijsen N, Gifford DK, Sherwood RI. Cell Rep. 2020 Nov 24;33(8):108426. doi: 10.1016/j.celrep.2020.108426. PubMed
STARRPeaker: uniform processing and accurate identification of STARR-seq active regions. Lee D, Shi M, Moran J, Wall M, Zhang J, Liu J, Fitzgerald D, Kyono Y, Ma L, White KP, Gerstein M. Genome Biol. 2020 Dec 8;21(1):298. doi: 10.1186/s13059-020-02194-x. PubMed
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands. Roberts BS, Partridge EC, Moyers BA, Agarwal V, Newberry KM, Martin BK, Shendure J, Myers RM, Cooper GM. Genome Res. 2021 May;31(5):866-876. doi: 10.1101/gr.270751.120. Epub 2021 Apr 20. PubMed
Functional mapping of androgen receptor enhancer activity. Huang CF, Lingadahalli S, Morova T, Ozturan D, Hu E, Yu IPL, Linder S, Hoogstraat M, Stelloo S, Sar F, van der Poel H, Altintas UB, Saffarzadeh M, Le Bihan S, McConeghy B, Gokbayrak B, Feng FY, Gleave ME, Bergman AM, Collins C, Hach F, Zwart W, Emberly E, Lack NA. Genome Biol. 2021 May 11;22(1):149. doi: 10.1186/s13059-021-02339-6. PubMed
Analysis of long and short enhancers in melanoma cell states. Mauduit D, Taskiran II, Minnoye L, de Waegeneer M, Christiaens V, Hulselmans G, Demeulemeester J, Wouters J, Aerts S. Elife. 2021 Dec 7;10. pii: 71735. doi: 10.7554/eLife.71735. PubMed Associated Plasmids pSA293-CHEQ-seq
Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations. Toropainen A, Stolze LK, Ord T, Whalen MB, Torrell PM, Link VM, Kaikkonen MU, Romanoski CE. Genome Res. 2022 Mar;32(3):409-424. doi: 10.1101/gr.276064.121. Epub 2022 Feb 22. PubMed
Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, Haberle V, Serebreni L, Karner K, Hendy O, Boija A, Henninger JE, Li CH, Stejskal K, Lin G, Bergauer K, Pagani M, Rath M, Mechtler K, Arnold CD, Stark A. Nature. 2022 Jun;606(7913):406-413. doi: 10.1038/s41586-022-04779-x. Epub 2022 Jun 1. PubMed
Epigenomic profiling of glucocorticoid responses identifies cis-regulatory disruptions impacting steroid resistance in childhood acute lymphoblastic leukemia. Bergeron BP, Diedrich JD, Zhang Y, Barnett KR, Dong Q, Ferguson DC, Autry RJ, Yang W, Hansen BS, Smith C, Crews KR, Fan Y, Pui CH, Pruett-Miller SM, Relling MV, Yang JJ, Li C, Evans WE, Savic D. Leukemia. 2022 Oct;36(10):2374-2383. doi: 10.1038/s41375-022-01685-z. Epub 2022 Aug 26. PubMed
Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation. Chen PB, Fiaux PC, Zhang K, Li B, Kubo N, Jiang S, Hu R, Rooholfada E, Wu S, Wang M, Wang W, McVicker G, Mischel PS, Ren B. Cell Rep. 2022 Nov 8;41(6):111630. doi: 10.1016/j.celrep.2022.111630. PubMed
Glucocorticoids unmask silent non-coding genetic risk variants for common diseases. Nguyen TTL, Gao H, Liu D, Philips TJ, Ye Z, Lee JH, Shi GX, Copenhaver K, Zhang L, Wei L, Yu J, Zhang H, Barath A, Luong M, Zhang C, Gaspar-Maia A, Li H, Wang L, Ordog T, Weinshilboum RM. Nucleic Acids Res. 2022 Nov 11;50(20):11635-11653. doi: 10.1093/nar/gkac1045. PubMed
Leveraging massively parallel reporter assays for evolutionary questions. Gallego Romero I, Lea AJ. Genome Biol. 2023 Feb 14;24(1):26. doi: 10.1186/s13059-023-02856-6. PubMed
eRNA profiling uncovers the enhancer landscape of oesophageal adenocarcinoma and reveals new deregulated pathways. Ahmed I, Yang SH, Ogden S, Zhang W, Li Y, Sharrocks AD. Elife. 2023 Feb 20;12:e80840. doi: 10.7554/eLife.80840. PubMed
Human gene regulatory evolution is driven by the divergence of regulatory element function in both cis and trans. Hansen T, Fong S, Capra JA, Hodges E. bioRxiv [Preprint]. 2023 Feb 15:2023.02.14.528376. doi: 10.1101/2023.02.14.528376. PubMed
Shared gene targets of the ATF4 and p53 transcriptional networks. Baniulyte G, Durham SA, Merchant LE, Sammons MA. bioRxiv. 2023 Jun 5:2023.03.15.532778. doi: 10.1101/2023.03.15.532778. Preprint. PubMed
High-throughput functional dissection of noncoding SNPs with biased allelic enhancer activity for insulin resistance-relevant phenotypes. Duan YY, Chen XF, Zhu RJ, Jia YY, Huang XT, Zhang M, Yang N, Dong SS, Zeng M, Feng Z, Zhu DL, Wu H, Jiang F, Shi W, Hu WX, Ke X, Chen H, Liu Y, Jing RH, Guo Y, Li M, Yang TL. Am J Hum Genet. 2023 Aug 3;110(8):1266-1288. doi: 10.1016/j.ajhg.2023.07.002. Epub 2023 Jul 27. PubMed
Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq. Gaynor-Gillett SC, Cheng L, Shi M, Liu J, Wang G, Spector M, Flaherty M, Wall M, Hwang A, Gu M, Chen Z, Chen Y, Consortium P, Moran JR, Zhang J, Lee D, Gerstein M, Geschwind D, White KP. bioRxiv [Preprint]. 2024 Mar 18:2024.03.14.585066. doi: 10.1101/2024.03.14.585066. PubMed
Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs. Wang C, Chen C, Lei B, Qin S, Zhang Y, Li K, Zhang S, Liu Y. Genet Sel Evol. 2024 Apr 9;56(1):28. doi: 10.1186/s12711-024-00897-4. PubMed
Human gene regulatory evolution is driven by the divergence of regulatory element function in both cis and trans. Hansen TJ, Fong SL, Day JK, Capra JA, Hodges E. Cell Genom. 2024 Apr 10;4(4):100536. doi: 10.1016/j.xgen.2024.100536. PubMed
Context dependent activity of p63-bound gene regulatory elements. McCann AA, Baniulyte G, Woodstock DL, Sammons MA. bioRxiv [Preprint]. 2024 May 12:2024.05.09.593326. doi: 10.1101/2024.05.09.593326. PubMed

If you have published an article using this material, please email us at to have your article added to this page.