sgOpti Citations (11)

Originally described in: Systematic mapping of functional enhancer-promoter connections with CRISPR interference.
Fulco CP, Munschauer M, Anyoha R, Munson G, Grossman SR, Perez EM, Kane M, Cleary B, Lander ES, Engreitz JM Science. 2016 Sep 29. pii: aag2445. PubMed Journal

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Articles Citing sgOpti

Articles
De Novo PITX1 Expression Controls Bi-Stable Transcriptional Circuits to Govern Self-Renewal and Differentiation in Squamous Cell Carcinoma. Sastre-Perona A, Hoang-Phou S, Leitner MC, Okuniewska M, Meehan S, Schober M. Cell Stem Cell. 2019 Mar 7;24(3):390-404.e8. doi: 10.1016/j.stem.2019.01.003. Epub 2019 Jan 31. PubMed
Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis. Ludwig LS, Lareau CA, Bao EL, Nandakumar SK, Muus C, Ulirsch JC, Chowdhary K, Buenrostro JD, Mohandas N, An X, Aryee MJ, Regev A, Sankaran VG. Cell Rep. 2019 Jun 11;27(11):3228-3240.e7. doi: 10.1016/j.celrep.2019.05.046. PubMed
Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH. Reilly SK, Gosai SJ, Gutierrez A, Mackay-Smith A, Ulirsch JC, Kanai M, Mouri K, Berenzy D, Kales S, Butler GM, Gladden-Young A, Bhuiyan RM, Stitzel ML, Finucane HK, Sabeti PC, Tewhey R. Nat Genet. 2021 Aug;53(8):1166-1176. doi: 10.1038/s41588-021-00900-4. Epub 2021 Jul 29. PubMed
Wnt target enhancer regulation by a CDX/TCF transcription factor collective and a novel DNA motif. Ramakrishnan AB, Chen L, Burby PE, Cadigan KM. Nucleic Acids Res. 2021 Sep 7;49(15):8625-8641. doi: 10.1093/nar/gkab657. PubMed
Mitochondrial respiration contributes to the interferon gamma response in antigen-presenting cells. Kiritsy MC, McCann K, Mott D, Holland SM, Behar SM, Sassetti CM, Olive AJ. Elife. 2021 Nov 2;10. pii: 65109. doi: 10.7554/eLife.65109. PubMed
Fetal Liver-Derived Alveolar-like Macrophages: A Self-Replicating Ex Vivo Model of Alveolar Macrophages for Functional Genetic Studies. Thomas ST, Wierenga KA, Pestka JJ, Olive AJ. Immunohorizons. 2022 Feb 22;6(2):156-169. doi: 10.4049/immunohorizons.2200011. PubMed
A Genome-Wide Screen in Macrophages Defines Host Genes Regulating the Uptake of Mycobacterium abscessus. Gilliland HN, Beckman OK, Olive AJ. mSphere. 2023 Apr 20;8(2):e0066322. doi: 10.1128/msphere.00663-22. Epub 2023 Feb 16. PubMed
Alternative CDC20 translational isoforms tune mitotic arrest duration. Tsang MJ, Cheeseman IM. Nature. 2023 May;617(7959):154-161. doi: 10.1038/s41586-023-05943-7. Epub 2023 Apr 26. PubMed
Selective Enhancer Dependencies in MYC -Intact and MYC -Rearranged Germinal Center B-cell Diffuse Large B-cell Lymphoma. Iyer AR, Gurumurthy A, Kodgule R, Aguilar AR, Saari T, Ramzan A, Rausch D, Gupta J, Hall CN, Runge JS, Weiss M, Rahmat M, Anyoha R, Fulco CP, Ghobrial IM, Engreitz J, Cieslik MP, Ryan RJH. bioRxiv. 2023 May 3:2023.05.02.538892. doi: 10.1101/2023.05.02.538892. Preprint. PubMed
A genome-wide screen in macrophages identifies PTEN as required for myeloid restriction of Listeria monocytogenes infection. Glover RC, Schwardt NH, Leano SE, Sanchez ME, Thomason MK, Olive AJ, Reniere ML. PLoS Pathog. 2023 May 22;19(5):e1011058. doi: 10.1371/journal.ppat.1011058. eCollection 2023 May. PubMed
Rewriting regulatory DNA to dissect and reprogram gene expression. Martyn GE, Montgomery MT, Jones H, Guo K, Doughty BR, Linder J, Chen Z, Cochran K, Lawrence KA, Munson G, Pampari A, Fulco CP, Kelley DR, Lander ES, Kundaje A, Engreitz JM. bioRxiv [Preprint]. 2023 Dec 21:2023.12.20.572268. doi: 10.1101/2023.12.20.572268. PubMed

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