pDECKO_mCherry Citations (12)
Originally described in: Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.Pulido-Quetglas C, Aparicio-Prat E, Arnan C, Polidori T, Hermoso T, Palumbo E, Ponomarenko J, Guigo R, Johnson R PLoS Comput Biol. 2017 Mar 2;13(3):e1005341. doi: 10.1371/journal.pcbi.1005341. eCollection 2017 Mar. PubMed Journal
Articles Citing pDECKO_mCherry
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Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.
Pulido-Quetglas C, Aparicio-Prat E, Arnan C, Polidori T, Hermoso T, Palumbo E, Ponomarenko J, Guigo R, Johnson R.
PLoS Comput Biol. 2017 Mar 2;13(3):e1005341. doi: 10.1371/journal.pcbi.1005341. eCollection 2017 Mar.
PubMed
Associated Plasmids |
| CBFbeta-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid Leukemia. Pulikkan JA, Hegde M, Ahmad HM, Belaghzal H, Illendula A, Yu J, O'Hagan K, Ou J, Muller-Tidow C, Wolfe SA, Zhu LJ, Dekker J, Bushweller JH, Castilla LH. Cell. 2018 Jun 28;174(1):172-186.e21. doi: 10.1016/j.cell.2018.05.048. PubMed |
| SARS-CoV-2 uses a multipronged strategy to impede host protein synthesis. Finkel Y, Gluck A, Nachshon A, Winkler R, Fisher T, Rozman B, Mizrahi O, Lubelsky Y, Zuckerman B, Slobodin B, Yahalom-Ronen Y, Tamir H, Ulitsky I, Israely T, Paran N, Schwartz M, Stern-Ginossar N. Nature. 2021 Jun;594(7862):240-245. doi: 10.1038/s41586-021-03610-3. Epub 2021 May 12. PubMed |
| Core binding factor leukemia hijacks T-cell prone PU.1 antisense promoter. van der Kouwe E, Heller G, Czibere A, Pulikkan JA, Agreiter C, Castilla LH, Delwel R, Di Ruscio A, Ebralidze AK, Forte M, Grebien F, Heyes E, Kazianka L, Klinger J, Kornauth C, Le T, Lind K, Barbosa IAM, Pemovska T, Pichler AS, Schmolke AS, Schweicker CM, Sill H, Sperr WR, Spittler A, Surapally S, Trinh BQ, Valent P, Vanura K, Welner RS, Zuber J, Tenen DG, Staber PB. Blood. 2021 May 19. pii: S0006-4971(21)01066-1. doi: 10.1182/blood.2020008971. PubMed |
| Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs. Vancura A, Lanzos A, Bosch-Guiteras N, Esteban MT, Gutierrez AH, Haefliger S, Johnson R. NAR Cancer. 2021 Apr 14;3(2):zcab013. doi: 10.1093/narcan/zcab013. eCollection 2021 Jun. PubMed |
| Lack of IRF6 Disrupts Human Epithelial Homeostasis by Altering Colony Morphology, Migration Pattern, and Differentiation Potential of Keratinocytes. Girousi E, Muerner L, Parisi L, Rihs S, von Gunten S, Katsaros C, Degen M. Front Cell Dev Biol. 2021 Sep 30;9:718066. doi: 10.3389/fcell.2021.718066. eCollection 2021. PubMed |
| LINC00152 Drives a Competing Endogenous RNA Network in Human Hepatocellular Carcinoma. Pellegrino R, Castoldi M, Ticconi F, Skawran B, Budczies J, Rose F, Schwab C, Breuhahn K, Neumann UP, Gaisa NT, Loosen SH, Luedde T, Costa IG, Longerich T. Cells. 2022 May 3;11(9). pii: cells11091528. doi: 10.3390/cells11091528. PubMed |
Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages.
Arnan C, Ullrich S, Pulido-Quetglas C, Nurtdinov R, Esteban A, Blanco-Fernandez J, Aparicio-Prat E, Johnson R, Perez-Lluch S, Guigo R.
BMC Genomics. 2022 May 26;23(1):402. doi: 10.1186/s12864-022-08612-7.
PubMed
Associated Plasmids |
| A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C. Cancer Discov. 2023 Feb 6;13(2):332-347. doi: 10.1158/2159-8290.CD-22-0210. PubMed |
| Tumour mutations in long noncoding RNAs enhance cell fitness. Esposito R, Lanzos A, Uroda T, Ramnarayanan S, Buchi I, Polidori T, Guillen-Ramirez H, Mihaljevic A, Merlin BM, Mela L, Zoni E, Hovhannisyan L, McCluggage F, Medo M, Basile G, Meise DF, Zwyssig S, Wenger C, Schwarz K, Vancura A, Bosch-Guiteras N, Andrades A, Tham AM, Roemmele M, Ochsenbein AF, Riether C, Kruithof-de Julio M, Zimmer Y, Medova M, Stroka D, Fox A, Johnson R. Nat Commun. 2023 Jun 8;14(1):3342. doi: 10.1038/s41467-023-39160-7. PubMed |
| Identifying essential long non-coding RNAs in cancer using CRISPRi-based dropout screens. Bril O, Schwarzmueller LJ, Moreno LF, Vermeulen L, Leveille N. STAR Protoc. 2023 Dec 15;4(4):102588. doi: 10.1016/j.xpro.2023.102588. Epub 2023 Sep 28. PubMed |
| Cell type specific long non-coding RNA targets identified by integrative analysis of single-cell and bulk colorectal cancer transcriptomes. Mihaljevic A, Rubin PD, Chouvardas P, Esposito R. Sci Rep. 2024 May 13;14(1):10939. doi: 10.1038/s41598-024-61430-7. PubMed |
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