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PurposeExpresses Cas9 codon optimized for Phaeodactylum tricornutum and a sgRNA driven by a U6 promoter
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Depositing Lab
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Sequence Information
Ordering
Item | Catalog # | Description | Quantity | Price (USD) | |
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Plasmid | 74923 | Standard format: Plasmid sent in bacteria as agar stab | 1 | $85 |
Backbone
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Vector backbonepBlueScript KS(+)
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Backbone manufacturerStratagene
- Backbone size w/o insert (bp) 2904
- Total vector size (bp) 8577
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Modifications to backboneBsa1 site located in ampicillin resistance gene removed
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Vector typeCRISPR
Growth in Bacteria
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Bacterial Resistance(s)Ampicillin, 100 μg/mL
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Growth Temperature37°C
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Growth Strain(s)DH5alpha
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Copy numberHigh Copy
Gene/Insert 1
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Gene/Insert nameLHCF2 promoter
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SpeciesPhaeodactylum tricornutum
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Insert Size (bp)442
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GenBank IDZ24761.1
- Promoter Cas9 module
Cloning Information for Gene/Insert 1
- Cloning method Restriction Enzyme
- 5′ cloning site Sac1 (not destroyed)
- 3′ cloning site Xba1 (not destroyed)
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Gene/Insert 2
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Gene/Insert namediaCas9
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SpeciesSynthetic
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Insert Size (bp)4283
- Promoter Cas9 module
Cloning Information for Gene/Insert 2
- Cloning method Restriction Enzyme
- 5′ cloning site Xba1 (not destroyed)
- 3′ cloning site BamHI (not destroyed)
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Gene/Insert 3
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Gene/Insert nameLHCF1 terminator
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SpeciesPhaeodactylum tricornutum
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Insert Size (bp)216
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GenBank IDZ24761.1
- Promoter Cas9 module
Cloning Information for Gene/Insert 3
- Cloning method Restriction Enzyme
- 5′ cloning site BamHI (not destroyed)
- 3′ cloning site Pst1 (not destroyed)
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Gene/Insert 4
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Gene/Insert nameU6 promoter
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SpeciesPhaeodactylum tricornutum
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Insert Size (bp)280
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GenBank IDCM000611.1
- Promoter sgRNA module
Cloning Information for Gene/Insert 4
- Cloning method Restriction Enzyme
- 5′ cloning site Pst1 (not destroyed)
- 3′ cloning site none (unknown if destroyed)
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Gene/Insert 5
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Gene/Insert namesgRNA
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SpeciesSynthetic
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Insert Size (bp)103
- Promoter sgRNA module
Cloning Information for Gene/Insert 5
- Cloning method Unknown
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Gene/Insert 6
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Gene/Insert nameU6 3' region
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SpeciesPhaeodactylum tricornutum
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Insert Size (bp)330
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GenBank IDCM000611.1
- Promoter sgRNA module
Cloning Information for Gene/Insert 6
- Cloning method Restriction Enzyme
- 5′ cloning site none (unknown if destroyed)
- 3′ cloning site HindIII (not destroyed)
- 5′ sequencing primer none
- 3′ sequencing primer none (Common Sequencing Primers)
Resource Information
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Articles Citing this Plasmid
Terms and Licenses
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Academic/Nonprofit Terms
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Industry Terms
- Not Available to Industry
Trademarks:
- Zeocin® is an InvivoGen trademark.
Depositor Comments
The diaCas9 module was synthesized by GeneArt® Services Thermo Fisher Scientific Inc.
The sgRNA module was synthesized by Eurofins Genomic Services Ltd.
These plasmids were created by your colleagues. Please acknowledge the Principal Investigator, cite the article in which the plasmids were described, and include Addgene in the Materials and Methods of your future publications.
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For your Materials & Methods section:
pKS diaCas9_sgRNA was a gift from Per Winge (Addgene plasmid # 74923 ; http://n2t.net/addgene:74923 ; RRID:Addgene_74923) -
For your References section:
A CRISPR/Cas9 system adapted for gene editing in marine algae. Nymark M, Sharma AK, Sparstad T, Bones AM, Winge P. Sci Rep. 2016 Apr 25;6:24951. doi: 10.1038/srep24951. 10.1038/srep24951 PubMed 27108533