MCS-BioID2-HA Citations (47)
Originally described in: An improved smaller biotin ligase for BioID proximity labeling.Kim DI, Jensen SC, Noble KA, Kc B, Roux KH, Motamedchaboki K, Roux KJ Mol Biol Cell. 2016 Feb 24. pii: mbc.E15-12-0844. PubMed Journal
Articles Citing MCS-BioID2-HA
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| Proximity-Dependent Biotinylation for Identification of Interacting Proteins. Le Sage V, Cinti A, Mouland AJ. Curr Protoc Cell Biol. 2016 Dec 1;73:17.19.1-17.19.12. doi: 10.1002/cpcb.11. PubMed |
| The N-cadherin interactome in primary cardiomyocytes as defined using quantitative proximity proteomics. Li Y, Merkel CD, Zeng X, Heier JA, Cantrell PS, Sun M, Stolz DB, Watkins SC, Yates NA, Kwiatkowski AV. J Cell Sci. 2019 Feb 11;132(3). pii: jcs.221606. doi: 10.1242/jcs.221606. PubMed |
| Growth Factor Independence 1B-Mediated Transcriptional Repression and Lineage Allocation Require Lysine-Specific Demethylase 1-Dependent Recruitment of the BHC Complex. McClellan D, Casey MJ, Bareyan D, Lucente H, Ours C, Velinder M, Singer J, Lone MD, Sun W, Coria Y, Mason CC, Engel ME. Mol Cell Biol. 2019 Jun 13;39(13). pii: MCB.00020-19. doi: 10.1128/MCB.00020-19. Print 2019 Jul 1. PubMed |
| Rational targeting of a NuRD subcomplex guided by comprehensive in situ mutagenesis. Sher F, Hossain M, Seruggia D, Schoonenberg VAC, Yao Q, Cifani P, Dassama LMK, Cole MA, Ren C, Vinjamur DS, Macias-Trevino C, Luk K, McGuckin C, Schupp PG, Canver MC, Kurita R, Nakamura Y, Fujiwara Y, Wolfe SA, Pinello L, Maeda T, Kentsis A, Orkin SH, Bauer DE. Nat Genet. 2019 Jul;51(7):1149-1159. doi: 10.1038/s41588-019-0453-4. Epub 2019 Jun 28. PubMed |
| Structural Basis of Mitochondrial Scaffolds by Prohibitin Complexes: Insight into a Role of the Coiled-Coil Region. Yoshinaka T, Kosako H, Yoshizumi T, Furukawa R, Hirano Y, Kuge O, Tamada T, Koshiba T. iScience. 2019 Sep 27;19:1065-1078. doi: 10.1016/j.isci.2019.08.056. Epub 2019 Sep 3. PubMed |
EXP1 is required for organisation of EXP2 in the intraerythrocytic malaria parasite vacuole.
Nessel T, Beck JM, Rayatpisheh S, Jami-Alahmadi Y, Wohlschlegel JA, Goldberg DE, Beck JR.
Cell Microbiol. 2020 Jan 28:e13168. doi: 10.1111/cmi.13168.
PubMed
Associated Plasmids |
| The RUNX1-ETO target gene RASSF2 suppresses t(8;21) AML development and regulates Rac GTPase signaling. Stoner SA, Liu KTH, Andrews ET, Liu M, Arimoto KI, Yan M, Davis AG, Weng S, Dow M, Xian S, DeKelver RC, Carter H, Zhang DE. Blood Cancer J. 2020 Feb 6;10(2):16. doi: 10.1038/s41408-020-0282-9. PubMed |
| Selective EMC subunits act as molecular tethers of intracellular organelles exploited during viral entry. Bagchi P, Torres M, Qi L, Tsai B. Nat Commun. 2020 Feb 28;11(1):1127. doi: 10.1038/s41467-020-14967-w. PubMed |
| TECPR1 promotes aggrephagy by direct recruitment of LC3C autophagosomes to lysosomes. Wetzel L, Blanchard S, Rama S, Beier V, Kaufmann A, Wollert T. Nat Commun. 2020 Jun 12;11(1):2993. doi: 10.1038/s41467-020-16689-5. PubMed |
| Establishment of Proximity-Dependent Biotinylation Approaches in Different Plant Model Systems. Arora D, Abel NB, Liu C, Van Damme P, Yperman K, Eeckhout D, Vu LD, Wang J, Tornkvist A, Impens F, Korbei B, Van Leene J, Goossens A, De Jaeger G, Ott T, Moschou PN, Van Damme D. Plant Cell. 2020 Nov;32(11):3388-3407. doi: 10.1105/tpc.20.00235. Epub 2020 Aug 25. PubMed |
| Proximity-dependent Proteomics Reveals Extensive Interactions of Protocadherin-19 with Regulators of Rho GTPases and the Microtubule Cytoskeleton. Emond MR, Biswas S, Morrow ML, Jontes JD. Neuroscience. 2021 Jan 1;452:26-36. doi: 10.1016/j.neuroscience.2020.09.033. Epub 2020 Oct 1. PubMed |
| Insight into the Interactome of Intramitochondrial PKA Using Biotinylation-Proximity Labeling. Ould Amer Y, Hebert-Chatelain E. Int J Mol Sci. 2020 Nov 5;21(21). pii: ijms21218283. doi: 10.3390/ijms21218283. PubMed |
| STAU2 protein level is controlled by caspases and the CHK1 pathway and regulates cell cycle progression in the non-transformed hTERT-RPE1 cells. Conde L, Gonzalez Quesada Y, Bonnet-Magnaval F, Beaujois R, DesGroseillers L. BMC Mol Cell Biol. 2021 Mar 4;22(1):16. doi: 10.1186/s12860-021-00352-y. PubMed |
| SLFN11 Inactivation Induces Proteotoxic Stress and Sensitizes Cancer Cells to Ubiquitin Activating Enzyme Inhibitor TAK-243. Murai Y, Jo U, Murai J, Jenkins LM, Huang SN, Chakka S, Chen L, Cheng K, Fukuda S, Takebe N, Pommier Y. Cancer Res. 2021 Jun 1;81(11):3067-3078. doi: 10.1158/0008-5472.CAN-20-2694. Epub 2021 Apr 16. PubMed |
| AP-2alpha-Mediated Activation of E2F and EZH2 Drives Melanoma Metastasis. White JR, Thompson DT, Koch KE, Kiriazov BS, Beck AC, van der Heide DM, Grimm BG, Kulak MV, Weigel RJ. Cancer Res. 2021 Sep 1;81(17):4455-4470. doi: 10.1158/0008-5472.CAN-21-0772. Epub 2021 Jul 1. PubMed |
| Interactomes of SARS-CoV-2 and human coronaviruses reveal host factors potentially affecting pathogenesis. Chen Z, Wang C, Feng X, Nie L, Tang M, Zhang H, Xiong Y, Swisher SK, Srivastava M, Chen J. EMBO J. 2021 Sep 1;40(17):e107776. doi: 10.15252/embj.2021107776. Epub 2021 Jul 26. PubMed |
| TNK1 is a ubiquitin-binding and 14-3-3-regulated kinase that can be targeted to block tumor growth. Chan TY, Egbert CM, Maxson JE, Siddiqui A, Larsen LJ, Kohler K, Balasooriya ER, Pennington KL, Tsang TM, Frey M, Soderblom EJ, Geng H, Muschen M, Forostyan TV, Free S, Mercenne G, Banks CJ, Valdoz J, Whatcott CJ, Foulks JM, Bearss DJ, O'Hare T, Huang DCS, Christensen KA, Moody J, Warner SL, Tyner JW, Andersen JL. Nat Commun. 2021 Sep 9;12(1):5337. doi: 10.1038/s41467-021-25622-3. PubMed |
| Screening of novel Midkine binding protein by BioID2-based proximity labeling. Komata Y, Tsubota S, Sakamoto K, Ikematsu S, Kadomatsu K. Nagoya J Med Sci. 2021 Aug;83(3):495-508. doi: 10.18999/nagjms.83.3.495. PubMed |
| Mapping the Proximity Interaction Network of STIM1 Reveals New Mechanisms of Cytoskeletal Regulation. Gammons J, Halpage J, Mancarella S. Cells. 2021 Oct 9;10(10). pii: cells10102701. doi: 10.3390/cells10102701. PubMed |
| Proximity-dependent biotinylation detects associations between SARS coronavirus nonstructural protein 1 and stress granule-associated proteins. Gerassimovich YA, Miladinovski-Bangall SJ, Bridges KM, Boateng L, Ball LE, Valafar H, Nag A. J Biol Chem. 2021 Dec;297(6):101399. doi: 10.1016/j.jbc.2021.101399. Epub 2021 Nov 11. PubMed |
| CD95/Fas suppresses NF-kappaB activation through recruitment of KPC2 in a CD95L/FasL-independent mechanism. Guegan JP, Pollet J, Ginestier C, Charafe-Jauffret E, Peter ME, Legembre P. iScience. 2021 Dec 1;24(12):103538. doi: 10.1016/j.isci.2021.103538. eCollection 2021 Dec 17. PubMed |
| CRISPR screens for lipid regulators reveal a role for ER-bound SNX13 in lysosomal cholesterol export. Lu A, Hsieh F, Sharma BR, Vaughn SR, Enrich C, Pfeffer SR. J Cell Biol. 2022 Feb 7;221(2):e202105060. doi: 10.1083/jcb.202105060. Epub 2021 Dec 22. PubMed |
| DDR1 contributes to kidney inflammation and fibrosis by promoting the phosphorylation of BCR and STAT3. Borza CM, Bolas G, Bock F, Zhang X, Akabogu FC, Zhang MZ, de Caestecker M, Yang M, Yang H, Lee E, Gewin L, Fogo AB, McDonald WH, Zent R, Pozzi A. JCI Insight. 2022 Feb 8;7(3):e150887. doi: 10.1172/jci.insight.150887. PubMed |
| Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease. Jobbins AM, Haberman N, Artigas N, Amourda C, Paterson HAB, Yu S, Blackford SJI, Montoya A, Dore M, Wang YF, Sardini A, Cebola I, Zuber J, Rashid ST, Lenhard B, Vernia S. Nucleic Acids Res. 2022 Apr 8;50(6):3379-3393. doi: 10.1093/nar/gkac165. PubMed |
| Mitochondrial antiviral-signalling protein is a client of the BAG6 protein quality control complex. Roboti P, Lawless C, High S. J Cell Sci. 2022 May 1;135(9). pii: 275354. doi: 10.1242/jcs.259596. Epub 2022 May 11. PubMed |
MicroID2: A Novel Biotin Ligase Enables Rapid Proximity Dependent Proteomics.
Johnson BS, Chafin L, Farkas D, Adair J, Elhance A, Farkas L, Bednash JS, Londino JD.
Mol Cell Proteomics. 2022 Jun 7:100256. doi: 10.1016/j.mcpro.2022.100256.
PubMed
Associated Plasmids |
| The S-palmitoylome and DHHC-PAT interactome of Drosophila melanogaster S2R+ cells indicate a high degree of conservation to mammalian palmitoylomes. Porcellato E, Gonzalez-Sanchez JC, Ahlmann-Eltze C, Elsakka MA, Shapira I, Fritsch J, Navarro JA, Anders S, Russell RB, Wieland FT, Metzendorf C. PLoS One. 2022 Aug 12;17(8):e0261543. doi: 10.1371/journal.pone.0261543. eCollection 2022. PubMed |
| TurboID Identification of Evolutionarily Divergent Components of the Nuclear Pore Complex in the Malaria Model Plasmodium berghei. Ambekar SV, Beck JR, Mair GR. mBio. 2022 Oct 26;13(5):e0181522. doi: 10.1128/mbio.01815-22. Epub 2022 Aug 30. PubMed |
| Operation of a TCA cycle subnetwork in the mammalian nucleus. Kafkia E, Andres-Pons A, Ganter K, Seiler M, Smith TS, Andrejeva A, Jouhten P, Pereira F, Franco C, Kuroshchenkova A, Leone S, Sawarkar R, Boston R, Thaventhiran J, Zaugg JB, Lilley KS, Lancrin C, Beck M, Patil KR. Sci Adv. 2022 Sep 2;8(35):eabq5206. doi: 10.1126/sciadv.abq5206. Epub 2022 Aug 31. PubMed |
| Proximity proteomics of synaptopodin provides insight into the molecular composition of the spine apparatus of dendritic spines. Falahati H, Wu Y, Feuerer V, Simon HG, De Camilli P. Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2203750119. doi: 10.1073/pnas.2203750119. Epub 2022 Oct 10. PubMed |
| Polo-Like Kinase 2 Plays an Essential Role in Cytoprotection against MG132-Induced Proteasome Inhibition via Phosphorylation of Serine 19 in HSPB5. Ueda S, Nishihara M, Hioka Y, Yoshino KI, Yamada S, Yamanoue M, Shirai Y. Int J Mol Sci. 2022 Sep 24;23(19):11257. doi: 10.3390/ijms231911257. PubMed |
| A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation. Gonzalez Quesada Y, DesGroseillers L. Int J Mol Sci. 2022 Sep 30;23(19):11588. doi: 10.3390/ijms231911588. PubMed |
| OCA7 is a melanosome membrane protein that defines pigmentation by regulating early stages of melanosome biogenesis. Beyers WC, Detry AM, Di Pietro SM. J Biol Chem. 2022 Dec;298(12):102669. doi: 10.1016/j.jbc.2022.102669. Epub 2022 Nov 9. PubMed |
| TRIP13 Participates in Immediate-Early Sensing of DNA Strand Breaks and ATM Signaling Amplification through MRE11. Jeong H, Wie M, Baek IJ, Sohn G, Um SH, Lee SG, Seo Y, Ra J, Lee EA, Kim S, Kim BG, Deshpande RA, Paull TT, Han JS, Kwon T, Myung K. Cells. 2022 Dec 16;11(24):4095. doi: 10.3390/cells11244095. PubMed |
| Phosphorylation of TRF2 promotes its interaction with TIN2 and regulates DNA damage response at telomeres. Storchova R, Palek M, Palkova N, Veverka P, Brom T, Hofr C, Macurek L. Nucleic Acids Res. 2023 Feb 22;51(3):1154-1172. doi: 10.1093/nar/gkac1269. PubMed |
| Hexokinase-1 mitochondrial dissociation and protein O-GlcNAcylation drive heart failure with preserved ejection fraction. Tatekoshi Y, Shapiro JS, Liu M, Bianco GM, Tatekoshi A, De Jesus A, Koleini N, Wasserstrom JA, Dillmann WH, Weinberg SE, Ardehali H. Res Sq. 2023 Jan 25:rs.3.rs-2448086. doi: 10.21203/rs.3.rs-2448086/v1. Preprint. PubMed |
| A targeted multi-proteomics approach generates a blueprint of the ciliary ubiquitinome. Aslanyan MG, Doornbos C, Diwan GD, Anvarian Z, Beyer T, Junger K, van Beersum SEC, Russell RB, Ueffing M, Ludwig A, Boldt K, Pedersen LB, Roepman R. Front Cell Dev Biol. 2023 Jan 26;11:1113656. doi: 10.3389/fcell.2023.1113656. eCollection 2023. PubMed |
| Comparison of PB1-F2 Proximity Interactomes Reveals Functional Differences between a Human and an Avian Influenza Virus. Mettier J, Prompt C, Bruder E, Da Costa B, Chevalier C, Le Goffic R. Viruses. 2023 Jan 24;15(2):328. doi: 10.3390/v15020328. PubMed |
| MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states. Bailey LRJ, Bugg D, Reichardt IM, Ortac CD, Gunaje J, Johnson R, MacCoss MJ, Sakamoto T, Kelly DP, Regnier M, Davis JM. bioRxiv. 2023 Mar 16:2023.03.16.532974. doi: 10.1101/2023.03.16.532974. Preprint. PubMed |
| MICU1 regulates mitochondrial cristae structure and function independently of the mitochondrial Ca(2+) uniporter channel. Tomar D, Thomas M, Garbincius JF, Kolmetzky DW, Salik O, Jadiya P, Joseph SK, Carpenter AC, Hajnoczky G, Elrod JW. Sci Signal. 2023 Apr 25;16(782):eabi8948. doi: 10.1126/scisignal.abi8948. Epub 2023 Apr 25. PubMed |
| The RNA-binding protein Snd1/Tudor-SN regulates hypoxia-responsive gene expression. Saarikettu J, Lehmusvaara S, Pesu M, Junttila I, Partanen J, Sipila P, Poutanen M, Yang J, Haikarainen T, Silvennoinen O. FASEB Bioadv. 2023 Feb 21;5(5):183-198. doi: 10.1096/fba.2022-00115. eCollection 2023 May. PubMed |
| Extended-Synaptotagmin 1 Enhances Liver Cancer Progression Mediated by the Unconventional Secretion of Cytosolic Proteins. Yamada K, Hannya Y, Oikawa T, Yoshida A, Katagiri K, Yoshida S, Koizumi R, Tago N, Shimoyama Y, Kawamura A, Mochimaru Y, Eto K, Yoshida K. Molecules. 2023 May 11;28(10):4033. doi: 10.3390/molecules28104033. PubMed |
| The ubiquitin ligase Uhrf2 is a master regulator of cholesterol biosynthesis and is essential for liver regeneration. Slabber CF, Bachofner M, Speicher T, Kuklin A, Fearon AE, Padrissa-Altes S, Bogorad R, Horvath Rudigier C, Wust D, Krautbauer S, Horing M, Liebisch G, Anderson DG, Wolfrum C, Auf dem Keller U, Werner S. Sci Signal. 2023 May 30;16(787):eade8029. doi: 10.1126/scisignal.ade8029. Epub 2023 May 30. PubMed |
| Serine protease 35 regulates the fibroblast matrisome in response to hyperosmotic stress. Sanger CS, Cernakova M, Wietecha MS, Garau Paganella L, Labouesse C, Dudaryeva OY, Roubaty C, Stumpe M, Mazza E, Tibbitt MW, Dengjel J, Werner S. Sci Adv. 2023 Sep;9(35):eadh9219. doi: 10.1126/sciadv.adh9219. Epub 2023 Aug 30. PubMed |
| Transcriptional repression upon S phase entry protects genome integrity in pluripotent cells. Gokbuget D, Lenshoek K, Boileau RM, Bayerl J, Huang H, Wiita AP, Laird DJ, Blelloch R. Nat Struct Mol Biol. 2023 Oct;30(10):1561-1570. doi: 10.1038/s41594-023-01092-7. Epub 2023 Sep 11. PubMed |
| TMEM65 regulates NCLX-dependent mitochondrial calcium efflux. Garbincius JF, Salik O, Cohen HM, Choya-Foces C, Mangold AS, Makhoul AD, Schmidt AE, Khalil DY, Doolittle JJ, Wilkinson AS, Murray EK, Lazaropoulos MP, Hildebrand AN, Tomar D, Elrod JW. bioRxiv [Preprint]. 2023 Oct 9:2023.10.06.561062. doi: 10.1101/2023.10.06.561062. PubMed |
| Discovery of SQSTM1/p62-dependent P-bodies that regulate the NLRP3 inflammasome. Barrow ER, Valionyte E, Baxter CR, Yang Y, Herath S, O'Connell WA, Lopatecka J, Strachan A, Woznica W, Stephenson HN, Fejer G, Sharma V, Lu B, Luo S. Cell Rep. 2024 Mar 26;43(3):113935. doi: 10.1016/j.celrep.2024.113935. Epub 2024 Mar 7. PubMed |
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