pcDNA3-mRuby2 Citations (38)
Originally described in: Improving FRET dynamic range with bright green and red fluorescent proteins.Lam AJ, St-Pierre F, Gong Y, Marshall JD, Cranfill PJ, Baird MA, McKeown MR, Wiedenmann J, Davidson MW, Schnitzer MJ, Tsien RY, Lin MZ Nat Methods. 2012 Sep 9. doi: 10.1038/nmeth.2171. PubMed Journal
Articles Citing pcDNA3-mRuby2
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Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging.
Takai A, Nakano M, Saito K, Haruno R, Watanabe TM, Ohyanagi T, Jin T, Okada Y, Nagai T.
Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4352-6. doi: 10.1073/pnas.1418468112. Epub 2015 Mar 23.
PubMed
Associated Plasmids |
| Optimizing fluorescent protein trios for 3-Way FRET imaging of protein interactions in living cells. Scott BL, Hoppe AD. Sci Rep. 2015 Jul 1;5:10270. doi: 10.1038/srep10270. PubMed |
Developing Fast Fluorescent Protein Voltage Sensors by Optimizing FRET Interactions.
Sung U, Sepehri-Rad M, Piao HH, Jin L, Hughes T, Cohen LB, Baker BJ.
PLoS One. 2015 Nov 20;10(11):e0141585. doi: 10.1371/journal.pone.0141585. eCollection 2015.
PubMed
Associated Plasmids |
| Tip-localized receptors control pollen tube growth and LURE sensing in Arabidopsis. Takeuchi H, Higashiyama T. Nature. 2016 Mar 10;531(7593):245-8. doi: 10.1038/nature17413. PubMed |
| FRET reveals multiple interaction states between two component signalling system proteins of M. tuberculosis. Agrawal R, Kumar V P, Ramanan H, Saini DK. Biochim Biophys Acta. 2016 Jul;1860(7):1498-507. doi: 10.1016/j.bbagen.2016.04.011. Epub 2016 Apr 19. PubMed |
A bacterial phytochrome-based optogenetic system controllable with near-infrared light.
Kaberniuk AA, Shemetov AA, Verkhusha VV.
Nat Methods. 2016 May 9. doi: 10.1038/nmeth.3864.
PubMed
Associated Plasmids |
| Developmentally-regulated RNA-binding Protein 1 (Drb1)/RNA-binding Motif Protein 45 (RBM45), a Nuclear-cytoplasmic Trafficking Protein, Forms TAR DNA-binding Protein 43 (TDP-43)-mediated Cytoplasmic Aggregates. Mashiko T, Sakashita E, Kasashima K, Tominaga K, Kuroiwa K, Nozaki Y, Matsuura T, Hamamoto T, Endo H. J Biol Chem. 2016 May 12. pii: jbc.M115.712232. PubMed |
| Rho GTPase Rif signals through IRTKS, Eps8 and WAVE2 to generate dorsal membrane ruffles and filopodia. Sudhaharan T, Sem KP, Liew HF, Yu YH, Goh WI, Chou AM, Ahmed S. J Cell Sci. 2016 Jun 8. pii: jcs.179655. PubMed |
Cellular resolution circuit mapping with temporal-focused excitation of soma-targeted channelrhodopsin.
Baker CA, Elyada YM, Parra A, Bolton MM.
Elife. 2016 Aug 15;5. pii: e14193. doi: 10.7554/eLife.14193.
PubMed
Associated Plasmids |
| Immunogenomic engineering of a plug-and-(dis)play hybridoma platform. Pogson M, Parola C, Kelton WJ, Heuberger P, Reddy ST. Nat Commun. 2016 Aug 17;7:12535. doi: 10.1038/ncomms12535. PubMed |
| Single Amino Acid Substitution N659D in HIV-2 Envelope Glycoprotein (Env) Impairs Viral Release and Hampers BST-2 Antagonism. Dufrasne FE, Lombard C, Goubau P, Ruelle J. Viruses. 2016 Oct 14;8(10). pii: E285. PubMed |
mScarlet: a bright monomeric red fluorescent protein for cellular imaging.
Bindels DS, Haarbosch L, van Weeren L, Postma M, Wiese KE, Mastop M, Aumonier S, Gotthard G, Royant A, Hink MA, Gadella TW Jr.
Nat Methods. 2016 Nov 21. doi: 10.1038/nmeth.4074.
PubMed
Associated Plasmids |
| A KCNC3 mutation causes a neurodevelopmental, non-progressive SCA13 subtype associated with dominant negative effects and aberrant EGFR trafficking. Khare S, Nick JA, Zhang Y, Galeano K, Butler B, Khoshbouei H, Rayaprolu S, Hathorn T, Ranum LPW, Smithson L, Golde TE, Paucar M, Morse R, Raff M, Simon J, Nordenskjold M, Wirdefeldt K, Rincon-Limas DE, Lewis J, Kaczmarek LK, Fernandez-Funez P, Nick HS, Waters MF. PLoS One. 2017 May 3;12(5):e0173565. doi: 10.1371/journal.pone.0173565. eCollection 2017. PubMed |
Optogenetic protein clustering through fluorescent protein tagging and extension of CRY2.
Park H, Kim NY, Lee S, Kim N, Kim J, Heo WD.
Nat Commun. 2017 Jun 23;8(1):30. doi: 10.1038/s41467-017-00060-2.
PubMed
Associated Plasmids |
| Microtubule cross-linking activity of She1 ensures spindle stability for spindle positioning. Zhu Y, An X, Tomaszewski A, Hepler PK, Lee WL. J Cell Biol. 2017 Aug 9. pii: jcb.201701094. doi: 10.1083/jcb.201701094. PubMed |
| A common mechanism by which type 2A von Willebrand disease mutations enhance ADAMTS13 proteolysis revealed with a von Willebrand factor A2 domain FRET construct. Lynch CJ, Cawte AD, Millar CM, Rueda D, Lane DA. PLoS One. 2017 Nov 29;12(11):e0188405. doi: 10.1371/journal.pone.0188405. eCollection 2017. PubMed |
A noncanonical role for dynamin-1 in regulating early stages of clathrin-mediated endocytosis in non-neuronal cells.
Srinivasan S, Burckhardt CJ, Bhave M, Chen Z, Chen PH, Wang X, Danuser G, Schmid SL.
PLoS Biol. 2018 Apr 18;16(4):e2005377. doi: 10.1371/journal.pbio.2005377. eCollection 2018 Apr.
PubMed
Associated Plasmids |
Tunable molecular tension sensors reveal extension-based control of vinculin loading.
LaCroix AS, Lynch AD, Berginski ME, Hoffman BD.
eLife. 2018 Jul 19;7. pii: 33927. doi: 10.7554/eLife.33927.
PubMed
Associated Plasmids |
| Junction-based lamellipodia drive endothelial cell rearrangements in vivo via a VE-cadherin-F-actin based oscillatory cell-cell interaction. Paatero I, Sauteur L, Lee M, Lagendijk AK, Heutschi D, Wiesner C, Guzman C, Bieli D, Hogan BM, Affolter M, Belting HG. Nat Commun. 2018 Aug 31;9(1):3545. doi: 10.1038/s41467-018-05851-9. PubMed |
| Genome Engineering of Hybridomas to Generate Stable Cell Lines for Antibody Expression. Parola C, Mason DM, Zingg A, Neumeier D, Reddy ST. Methods Mol Biol. 2018;1850:79-111. doi: 10.1007/978-1-4939-8730-6_7. PubMed |
| Sensory perception drives food avoidance through excitatory basal forebrain circuits. Patel JM, Swanson J, Ung K, Herman A, Hanson E, Ortiz-Guzman J, Selever J, Tong Q, Arenkiel BR. Elife. 2019 May 10;8. pii: 44548. doi: 10.7554/eLife.44548. PubMed |
| Integrin Mechano-chemical Signaling Generates Plasma Membrane Nanodomains that Promote Cell Spreading. Kalappurakkal JM, Anilkumar AA, Patra C, van Zanten TS, Sheetz MP, Mayor S. Cell. 2019 Jun 13;177(7):1738-1756.e23. doi: 10.1016/j.cell.2019.04.037. Epub 2019 May 16. PubMed |
| Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids. Ouchi R, Togo S, Kimura M, Shinozawa T, Koido M, Koike H, Thompson W, Karns RA, Mayhew CN, McGrath PS, McCauley HA, Zhang RR, Lewis K, Hakozaki S, Ferguson A, Saiki N, Yoneyama Y, Takeuchi I, Mabuchi Y, Akazawa C, Yoshikawa HY, Wells JM, Takebe T. Cell Metab. 2019 May 30. pii: S1550-4131(19)30247-5. doi: 10.1016/j.cmet.2019.05.007. PubMed |
| The adhesion-GPCR BAI1 shapes dendritic arbors via Bcr-mediated RhoA activation causing late growth arrest. Duman JG, Mulherkar S, Tu YK, Erikson KC, Tzeng CP, Mavratsas VC, Ho TS, Tolias KF. Elife. 2019 Aug 28;8. pii: 47566. doi: 10.7554/eLife.47566. PubMed |
| Flow cytometry-based FRET identifies binding intensities in PPARgamma1 protein-protein interactions in living cells. Trumper V, von Knethen A, Preuss A, Ermilov E, Hackbarth S, Kuchler L, Gunne S, Schafer A, Bornhutter T, Vereb G, Ujlaky-Nagy L, Brune B, Roder B, Schindler M, Parnham MJ, Knape T. Theranostics. 2019 Jul 28;9(19):5444-5463. doi: 10.7150/thno.29367. eCollection 2019. PubMed |
| Optogenetic Control of Spine-Head JNK Reveals a Role in Dendritic Spine Regression. Hollos P, John JM, Lehtonen JV, Coffey ET. eNeuro. 2020 Feb 20;7(1). pii: ENEURO.0303-19.2019. doi: 10.1523/ENEURO.0303-19.2019. Print 2020 Jan/Feb. PubMed |
| Quantitative Determination of Dark Chromophore Population Explains the Apparent Low Quantum Yield of Red Fluorescent Proteins. Prangsma JC, Molenaar R, van Weeren L, Bindels DS, Haarbosch L, Stouthamer J, Gadella TWJ Jr, Subramaniam V, Vos WL, Blum C. J Phys Chem B. 2020 Feb 27;124(8):1383-1391. doi: 10.1021/acs.jpcb.9b10396. Epub 2020 Feb 17. PubMed |
| Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy. Valuchova S, Mikulkova P, Pecinkova J, Klimova J, Krumnikl M, Bainar P, Heckmann S, Tomancak P, Riha K. Elife. 2020 Feb 11;9. pii: 52546. doi: 10.7554/eLife.52546. PubMed |
| Upregulated PKM2 in Macrophages Exacerbates Experimental Arthritis via STAT1 Signaling. Xu J, Jiang C, Wang X, Geng M, Peng Y, Guo Y, Wang S, Li X, Tao P, Zhang F, Han Y, Ning Q, Zhu W, Meng L, Lu S. J Immunol. 2020 Jul 1;205(1):181-192. doi: 10.4049/jimmunol.1901021. Epub 2020 Jun 5. PubMed |
| Protein kinase D promotes activity-dependent AMPA receptor endocytosis in hippocampal neurons. Oueslati Morales CO, Ignacz A, Bencsik N, Sziber Z, Ratkai AE, Lieb WS, Eisler SA, Szucs A, Schlett K, Hausser A. Traffic. 2021 Dec;22(12):454-470. doi: 10.1111/tra.12819. Epub 2021 Oct 5. PubMed |
| A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells. Bai Y, Caussinus E, Leo S, Bosshardt F, Myachina F, Rot G, Robinson MD, Lehner CF. BMC Genomics. 2021 Oct 28;22(1):771. doi: 10.1186/s12864-021-08057-4. PubMed |
| Discovery and validation of human genomic safe harbor sites for gene and cell therapies. Aznauryan E, Yermanos A, Kinzina E, Devaux A, Kapetanovic E, Milanova D, Church GM, Reddy ST. Cell Rep Methods. 2022 Jan 14;2(1):100154. doi: 10.1016/j.crmeth.2021.100154. eCollection 2022 Jan 24. PubMed |
| Two-Photon Excitation Spectra of Various Fluorescent Proteins within a Broad Excitation Range. Leben R, Lindquist RL, Hauser AE, Niesner R, Rakhymzhan A. Int J Mol Sci. 2022 Nov 2;23(21):13407. doi: 10.3390/ijms232113407. PubMed |
| Tissue-like environments shape functional interactions of HIV-1 with immature dendritic cells. Gallucci L, Abele T, Fronza R, Stolp B, Laketa V, Sid Ahmed S, Flemming A, Muller B, Gopfrich K, Fackler OT. EMBO Rep. 2023 Jun 5;24(6):e56818. doi: 10.15252/embr.202356818. Epub 2023 Apr 12. PubMed |
| Keratin isoform shifts modulate motility signals during wound healing. Nanes BA, Bhatt K, Azarova E, Rajendran D, Isogai T, Dean KM, Danuser G. bioRxiv. 2023 May 5:2023.05.04.538989. doi: 10.1101/2023.05.04.538989. Preprint. PubMed |
| Convergent activation of Ca(2+) permeability in two-pore channel 2 through distinct molecular routes. Saito R, Mu Q, Yuan Y, Rubio-Alarcon M, Eznarriaga M, Zhao P, Gunaratne G, Kumar S, Keller M, Bracher F, Grimm C, Brailoiu E, Marchant JS, Rahman T, Patel S. Sci Signal. 2023 Aug 22;16(799):eadg0661. doi: 10.1126/scisignal.adg0661. Epub 2023 Aug 22. PubMed |
| A combined biochemical and cellular approach reveals Zn(2+)-dependent hetero- and homodimeric CD4 and Lck assemblies in T cells. Kocyla AM, Czogalla A, Wessels I, Rink L, Krezel A. Structure. 2024 Mar 7;32(3):292-303.e7. doi: 10.1016/j.str.2023.11.013. Epub 2023 Dec 28. PubMed |
| Cholinergic Basal Forebrain Connectivity to the Basolateral Amygdala Modulates Food Intake. Ortiz-Guzman J, Swanson JL, Tantry EK, Kochukov M, Ung K, Addison AP, Srivastava S, Belfort BD, Ji E, Dooling SW, Chen SA, Tong Q, Arenkiel BR. eNeuro. 2024 Mar 5;11(3):ENEURO.0369-23.2024. doi: 10.1523/ENEURO.0369-23.2024. Print 2024 Mar. PubMed |
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