pcDNA3.1 mycBioID Citations (84)
Originally described in: A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.Roux KJ, Kim DI, Raida M, Burke B J Cell Biol. 2012 Mar 12. PubMed Journal
Articles Citing pcDNA3.1 mycBioID
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| The N and C termini of ZO-1 are surrounded by distinct proteins and functional protein networks. Van Itallie CM, Aponte A, Tietgens AJ, Gucek M, Fredriksson K, Anderson JM. J Biol Chem. 2013 May 10;288(19):13775-88. doi: 10.1074/jbc.M113.466193. Epub 2013 Apr 3. PubMed |
| Biotin ligase tagging identifies proteins proximal to E-cadherin, including lipoma preferred partner, a regulator of epithelial cell-cell and cell-substrate adhesion. Van Itallie CM, Tietgens AJ, Aponte A, Fredriksson K, Fanning AS, Gucek M, Anderson JM. J Cell Sci. 2014 Feb 15;127(Pt 4):885-95. doi: 10.1242/jcs.140475. Epub 2013 Dec 11. PubMed |
| Probing nuclear pore complex architecture with proximity-dependent biotinylation. Kim DI, Birendra KC, Zhu W, Motamedchaboki K, Doye V, Roux KJ. Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):E2453-61. doi: 10.1073/pnas.1406459111. Epub 2014 Jun 3. PubMed |
| The eukaryotic signal sequence, YGRL, targets the chlamydial inclusion. Kabeiseman EJ, Cichos KH, Moore ER. Front Cell Infect Microbiol. 2014 Sep 11;4:129. doi: 10.3389/fcimb.2014.00129. eCollection 2014. PubMed |
| E-cadherin interactome complexity and robustness resolved by quantitative proteomics. Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S, Zaidel-Bar R. Sci Signal. 2014 Dec 2;7(354):rs7. doi: 10.1126/scisignal.2005473. PubMed |
| Proteomic analysis of proteins surrounding occludin and claudin-4 reveals their proximity to signaling and trafficking networks. Fredriksson K, Van Itallie CM, Aponte A, Gucek M, Tietgens AJ, Anderson JM. PLoS One. 2015 Mar 19;10(3):e0117074. doi: 10.1371/journal.pone.0117074. eCollection 2015. PubMed |
| Regulation of Latent Membrane Protein 1 Signaling through Interaction with Cytoskeletal Proteins. Holthusen K, Talaty P, Everly DN Jr. J Virol. 2015 Jul 15;89(14):7277-90. doi: 10.1128/JVI.00321-15. Epub 2015 May 6. PubMed |
| Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. Le Sage V, Cinti A, Valiente-Echeverria F, Mouland AJ. Virol J. 2015 Sep 11;12:138. doi: 10.1186/s12985-015-0365-6. PubMed |
An improved smaller biotin ligase for BioID proximity labeling.
Kim DI, Jensen SC, Noble KA, Kc B, Roux KH, Motamedchaboki K, Roux KJ.
Mol Biol Cell. 2016 Feb 24. pii: mbc.E15-12-0844.
PubMed
Associated Plasmids |
| Protein-protein interactions suggest novel activities of human cytomegalovirus tegument protein pUL103. Ortiz DA, Glassbrook JE, Pellett PE. J Virol. 2016 Jun 22. pii: JVI.00097-16. PubMed |
Determination of Local Chromatin Composition by CasID.
Schmidtmann E, Anton T, Rombaut P, Herzog F, Leonhardt H.
Nucleus. 2016 Sep 27:0.
PubMed
Associated Plasmids |
| Proximity-Dependent Biotinylation for Identification of Interacting Proteins. Le Sage V, Cinti A, Mouland AJ. Curr Protoc Cell Biol. 2016 Dec 1;73:17.19.1-17.19.12. doi: 10.1002/cpcb.11. PubMed |
| Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis. Cutler JA, Tahir R, Sreenivasamurthy SK, Mitchell C, Renuse S, Nirujogi RS, Patil AH, Heydarian M, Wong X, Wu X, Huang TC, Kim MS, Reddy KL, Pandey A. Leukemia. 2017 Jul;31(7):1513-1524. doi: 10.1038/leu.2017.61. Epub 2017 Feb 17. PubMed |
| Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. Groves JA, Maduka AO, O'Meally RN, Cole RN, Zachara NE. J Biol Chem. 2017 Apr 21;292(16):6493-6511. doi: 10.1074/jbc.M116.760785. Epub 2017 Feb 23. PubMed |
| Translocation of the papillomavirus L2/vDNA complex across the limiting membrane requires the onset of mitosis. Calton CM, Bronnimann MP, Manson AR, Li S, Chapman JA, Suarez-Berumen M, Williamson TR, Molugu SK, Bernal RA, Campos SK. PLoS Pathog. 2017 May 2;13(5):e1006200. doi: 10.1371/journal.ppat.1006200. eCollection 2017 May. PubMed |
| UCHL1 promotes invasion of breast cancer cells through activating Akt signaling pathway. Luo Y, He J, Yang C, Orange M, Ren X, Blair N, Tan T, Yang JM, Zhu H. J Cell Biochem. 2017 Jun 21. doi: 10.1002/jcb.26232. PubMed |
| The Protein Encoded by the CCDC170 Breast Cancer Gene Functions to Organize the Golgi-Microtubule Network. Jiang P, Li Y, Poleshko A, Medvedeva V, Baulina N, Zhang Y, Zhou Y, Slater CM, Pellegrin T, Wasserman J, Lindy M, Efimov A, Daly M, Katz RA, Chen X. EBioMedicine. 2017 Jun 27. pii: S2352-3964(17)30259-1. doi: 10.1016/j.ebiom.2017.06.024. PubMed |
| Condensin II is anchored by TFIIIC and H3K4me3 in the mammalian genome and supports the expression of active dense gene clusters. Yuen KC, Slaughter BD, Gerton JL. Sci Adv. 2017 Jun 21;3(6):e1700191. doi: 10.1126/sciadv.1700191. eCollection 2017 Jun. PubMed |
| TRIB1 is a positive regulator of hepatocyte nuclear factor 4-alpha. Soubeyrand S, Martinuk A, McPherson R. Sci Rep. 2017 Jul 17;7(1):5574. doi: 10.1038/s41598-017-05768-1. PubMed |
| SOCS2 Binds to and Regulates EphA2 through Multiple Mechanisms. Pilling C, Cooper JA. Sci Rep. 2017 Sep 7;7(1):10838. doi: 10.1038/s41598-017-11040-3. PubMed |
| The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module. Dilworth D, Upadhyay SK, Bonnafous P, Edoo AB, Bourbigot S, Pesek-Jardim F, Gudavicius G, Serpa JJ, Petrotchenko EV, Borchers CH, Nelson CJ, Mackereth CD. Nucleic Acids Res. 2017 Nov 16;45(20):11989-12004. doi: 10.1093/nar/gkx852. PubMed |
| Endosomal phosphatidylserine is critical for the YAP signalling pathway in proliferating cells. Matsudaira T, Mukai K, Noguchi T, Hasegawa J, Hatta T, Iemura SI, Natsume T, Miyamura N, Nishina H, Nakayama J, Semba K, Tomita T, Murata S, Arai H, Taguchi T. Nat Commun. 2017 Nov 1;8(1):1246. doi: 10.1038/s41467-017-01255-3. PubMed |
| The interactome of EBV LMP1 evaluated by proximity-based BioID approach. Rider MA, Cheerathodi MR, Hurwitz SN, Nkosi D, Howell LA, Tremblay DC, Liu X, Zhu F, Meckes DG Jr. Virology. 2018 Mar;516:55-70. doi: 10.1016/j.virol.2017.12.033. Epub 2018 Jan 9. PubMed |
| Identification of progesterone receptor membrane component-1 as an interaction partner and possible regulator of fatty acid 2-hydroxylase. Hardt R, Winter D, Gieselmann V, Eckhardt M. Biochem J. 2018 Mar 6;475(5):853-871. doi: 10.1042/BCJ20170963. PubMed |
| The MYO6 interactome reveals adaptor complexes coordinating early endosome and cytoskeletal dynamics. O'Loughlin T, Masters TA, Buss F. EMBO Rep. 2018 Apr;19(4). pii: embr.201744884. doi: 10.15252/embr.201744884. Epub 2018 Feb 21. PubMed |
| Actin-dependent regulation of cilia length by the inverted formin FHDC1. Copeland SJ, McRae A, Guarguaglini G, Trinkle-Mulcahy L, Copeland JW. Mol Biol Cell. 2018 Jul 1;29(13):1611-1627. doi: 10.1091/mbc.E18-02-0088. Epub 2018 May 9. PubMed |
| Flaviviruses Exploit the Lipid Droplet Protein AUP1 to Trigger Lipophagy and Drive Virus Production. Zhang J, Lan Y, Li MY, Lamers MM, Fusade-Boyer M, Klemm E, Thiele C, Ashour J, Sanyal S. Cell Host Microbe. 2018 Jun 13;23(6):819-831.e5. doi: 10.1016/j.chom.2018.05.005. PubMed |
Identification of Miro1 and Miro2 as mitochondrial receptors for myosin XIX.
Oeding SJ, Majstrowicz K, Hu XP, Schwarz V, Freitag A, Honnert U, Nikolaus P, Bahler M.
J Cell Sci. 2018 Sep 10;131(17). pii: jcs.219469. doi: 10.1242/jcs.219469.
PubMed
Associated Plasmids |
| Interactions of Nesprin-4-Containing LINC Complexes in Outer Hair Cells Explored by BioID. Burke B. Methods Mol Biol. 2018;1840:45-56. doi: 10.1007/978-1-4939-8691-0_5. PubMed |
RNA-binding proteins and heat-shock protein 90 are constituents of the cytoplasmic capping enzyme interactome.
Trotman JB, Agana BA, Giltmier AJ, Wysocki VH, Schoenberg DR.
J Biol Chem. 2018 Oct 26;293(43):16596-16607. doi: 10.1074/jbc.RA118.004973. Epub 2018 Aug 30.
PubMed
Associated Plasmids |
Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability.
Adhikari H, Counter CM.
Nat Commun. 2018 Sep 7;9(1):3646. doi: 10.1038/s41467-018-05692-6.
PubMed
Associated Plasmids |
| Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. Boucher MJ, Ghosh S, Zhang L, Lal A, Jang SW, Ju A, Zhang S, Wang X, Ralph SA, Zou J, Elias JE, Yeh E. PLoS Biol. 2018 Sep 13;16(9):e2005895. doi: 10.1371/journal.pbio.2005895. eCollection 2018 Sep. PubMed |
A Novel Class of ER Membrane Proteins Regulates ER-Associated Endosome Fission.
Hoyer MJ, Chitwood PJ, Ebmeier CC, Striepen JF, Qi RZ, Old WM, Voeltz GK.
Cell. 2018 Sep 20;175(1):254-265.e14. doi: 10.1016/j.cell.2018.08.030. Epub 2018 Sep 13.
PubMed
Associated Plasmids |
| AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A. Davies AK, Itzhak DN, Edgar JR, Archuleta TL, Hirst J, Jackson LP, Robinson MS, Borner GHH. Nat Commun. 2018 Sep 27;9(1):3958. doi: 10.1038/s41467-018-06172-7. PubMed |
| BioID: A Proximity-Dependent Labeling Approach in Proteomics Study. Li P, Meng Y, Wang L, Di LJ. Methods Mol Biol. 2019;1871:143-151. doi: 10.1007/978-1-4939-8814-3_10. PubMed |
| Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells. Zhang S, Williamson NA, Bogoyevitch MA. Sci Data. 2018 Nov 20;5:180262. doi: 10.1038/sdata.2018.262. PubMed |
| Intersectin-1 interacts with the golgin GCC88 to couple the actin network and Golgi architecture. Makhoul C, Gosavi P, Duffield R, Delbridge B, Williamson NA, Gleeson PA. Mol Biol Cell. 2019 Feb 1;30(3):370-386. doi: 10.1091/mbc.E18-05-0313. Epub 2018 Dec 12. PubMed |
| Replisome Dynamics and Their Functional Relevance upon DNA Damage through the PCNA Interactome. Srivastava M, Chen Z, Zhang H, Tang M, Wang C, Jung SY, Chen J. Cell Rep. 2018 Dec 26;25(13):3869-3883.e4. doi: 10.1016/j.celrep.2018.11.099. PubMed |
| Identification of calnexin as a diacylglycerol acyltransferase-2 interacting protein. Brandt C, McFie PJ, Vu H, Chumala P, Katselis GS, Stone SJ. PLoS One. 2019 Jan 7;14(1):e0210396. doi: 10.1371/journal.pone.0210396. eCollection 2019. PubMed |
| MIST1, an Inductive Signal for Salivary Amylase in Mesenchymal Stem Cells. Mona M, Miller R, Li H, Park YJ, Zaman R, Yang LJ, Cha S. Int J Mol Sci. 2019 Feb 12;20(3). pii: ijms20030767. doi: 10.3390/ijms20030767. PubMed |
| AP-1(cFos/JunB)/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration. Sabin KZ, Jiang P, Gearhart MD, Stewart R, Echeverri K. Commun Biol. 2019 Mar 6;2:91. doi: 10.1038/s42003-019-0335-4. eCollection 2019. PubMed |
| GGA2 and RAB13 promote activity-dependent beta1-integrin recycling. Sahgal P, Alanko J, Icha J, Paatero I, Hamidi H, Arjonen A, Pietila M, Rokka A, Ivaska J. J Cell Sci. 2019 Jun 7;132(11). pii: jcs.233387. doi: 10.1242/jcs.233387. PubMed |
| A molecular switch from STAT2-IRF9 to ISGF3 underlies interferon-induced gene transcription. Platanitis E, Demiroz D, Schneller A, Fischer K, Capelle C, Hartl M, Gossenreiter T, Muller M, Novatchkova M, Decker T. Nat Commun. 2019 Jul 2;10(1):2921. doi: 10.1038/s41467-019-10970-y. PubMed |
| A Non-canonical Role of YAP/TEAD Is Required for Activation of Estrogen-Regulated Enhancers in Breast Cancer. Zhu C, Li L, Zhang Z, Bi M, Wang H, Su W, Hernandez K, Liu P, Chen J, Chen M, Huang TH, Chen L, Liu Z. Mol Cell. 2019 Aug 22;75(4):791-806.e8. doi: 10.1016/j.molcel.2019.06.010. Epub 2019 Jul 11. PubMed |
| Proximity Labeling of the Chlamydia trachomatis Inclusion Membrane. Olson MG, Jorgenson LM, Widner RE, Rucks EA. Methods Mol Biol. 2019;2042:245-278. doi: 10.1007/978-1-4939-9694-0_17. PubMed |
| The human Shu complex functions with PDS5B and SPIDR to promote homologous recombination. Martino J, Brunette GJ, Barroso-Gonzalez J, Moiseeva TN, Smith CM, Bakkenist CJ, O'Sullivan RJ, Bernstein KA. Nucleic Acids Res. 2019 Nov 4;47(19):10151-10165. doi: 10.1093/nar/gkz738. PubMed |
| The PAX-SIX-EYA-DACH network modulates GATA-FOG function in fly hematopoiesis and human erythropoiesis. Creed TM, Baldeosingh R, Eberly CL, Schlee CS, Kim M, Cutler JA, Pandey A, Civin CI, Fossett NG, Kingsbury TJ. Development. 2020 Jan 3;147(1). pii: dev.177022. doi: 10.1242/dev.177022. PubMed |
| CLIC4 and CLIC1 bridge plasma membrane and cortical actin network for a successful cytokinesis. Uretmen Kagiali ZC, Saner N, Akdag M, Sanal E, Degirmenci BS, Mollaoglu G, Ozlu N. Life Sci Alliance. 2019 Dec 26;3(2). pii: 3/2/e201900558. doi: 10.26508/lsa.201900558. Print 2020 Feb. PubMed |
| Mapping axon initial segment structure and function by multiplexed proximity biotinylation. Hamdan H, Lim BC, Torii T, Joshi A, Konning M, Smith C, Palmer DJ, Ng P, Leterrier C, Oses-Prieto JA, Burlingame AL, Rasband MN. Nat Commun. 2020 Jan 3;11(1):100. doi: 10.1038/s41467-019-13658-5. PubMed |
| The LC3-conjugation machinery specifies the loading of RNA-binding proteins into extracellular vesicles. Leidal AM, Huang HH, Marsh T, Solvik T, Zhang D, Ye J, Kai F, Goldsmith J, Liu JY, Huang YH, Monkkonen T, Vlahakis A, Huang EJ, Goodarzi H, Yu L, Wiita AP, Debnath J. Nat Cell Biol. 2020 Feb;22(2):187-199. doi: 10.1038/s41556-019-0450-y. Epub 2020 Jan 13. PubMed |
| Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity. Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I. Nat Commun. 2020 Mar 13;11(1):1388. doi: 10.1038/s41467-020-15223-x. PubMed |
| The SHCA adapter protein cooperates with lipoma-preferred partner in the regulation of adhesion dynamics and invadopodia formation. Kiepas A, Voorand E, Senecal J, Ahn R, Annis MG, Jacquet K, Tali G, Bisson N, Ursini-Siegel J, Siegel PM, Brown CM. J Biol Chem. 2020 Jul 31;295(31):10535-10559. doi: 10.1074/jbc.RA119.011903. Epub 2020 Apr 16. PubMed |
Tollip coordinates Parkin-dependent trafficking of mitochondrial-derived vesicles.
Ryan TA, Phillips EO, Collier CL, Jb Robinson A, Routledge D, Wood RE, Assar EA, Tumbarello DA.
EMBO J. 2020 Jun 2;39(11):e102539. doi: 10.15252/embj.2019102539. Epub 2020 Apr 20.
PubMed
Associated Plasmids |
| Fbxo45 Binds SPRY Motifs in the Extracellular Domain of N-Cadherin and Regulates Neuron Migration during Brain Development. Na Y, Calvo-Jimenez E, Kon E, Cao H, Jossin Y, Cooper JA. Mol Cell Biol. 2020 Jun 29;40(14). pii: MCB.00539-19. doi: 10.1128/MCB.00539-19. Print 2020 Jun 29. PubMed |
| Ykt6-dependent endosomal recycling is required for Wnt secretion in the Drosophila wing epithelium. Linnemannstons K, Witte L, Karuna M P, Kittel JC, Danieli A, Muller D, Nitsch L, Honemann-Capito M, Grawe F, Wodarz A, Gross JC. Development. 2020 Aug 14;147(15). pii: dev.185421. doi: 10.1242/dev.185421. PubMed |
| TMEM16K is an interorganelle regulator of endosomal sorting. Petkovic M, Oses-Prieto J, Burlingame A, Jan LY, Jan YN. Nat Commun. 2020 Jul 3;11(1):3298. doi: 10.1038/s41467-020-17016-8. PubMed |
| The ataxin-1 interactome reveals direct connection with multiple disrupted nuclear transport pathways. Zhang S, Williamson NA, Duvick L, Lee A, Orr HT, Korlin-Downs A, Yang P, Mok YF, Jans DA, Bogoyevitch MA. Nat Commun. 2020 Jul 3;11(1):3343. doi: 10.1038/s41467-020-17145-0. PubMed |
| Splicing variation of BMP2K balances abundance of COPII assemblies and autophagic degradation in erythroid cells. Cendrowski J, Kaczmarek M, Mazur M, Kuzmicz-Kowalska K, Jastrzebski K, Brewinska-Olchowik M, Kominek A, Piwocka K, Miaczynska M. Elife. 2020 Aug 14;9. pii: 58504. doi: 10.7554/eLife.58504. PubMed |
| Menin and Menin-Associated Proteins Coregulate Cancer Energy Metabolism. Chou CW, Tan X, Hung CN, Lieberman B, Chen M, Kusi M, Mitsuya K, Lin CL, Morita M, Liu Z, Chen CL, Huang TH. Cancers (Basel). 2020 Sep 22;12(9). pii: cancers12092715. doi: 10.3390/cancers12092715. PubMed |
| Phosphorylation of Ykt6 SNARE Domain Regulates Its Membrane Recruitment and Activity. Karuna M P, Witte L, Linnemannstoens K, Choezom D, Danieli-Mackay A, Honemann-Capito M, Gross JC. Biomolecules. 2020 Nov 16;10(11). pii: biom10111560. doi: 10.3390/biom10111560. PubMed |
| Proximity-Dependent Biotinylation (BioID) of Integrin Interaction Partners. Myllymaki SM, Liu X, Varjosalo M, Manninen A. Methods Mol Biol. 2021;2217:57-69. doi: 10.1007/978-1-0716-0962-0_6. PubMed |
| A Casz1-NuRD complex regulates temporal identity transitions in neural progenitors. Mattar P, Jolicoeur C, Dang T, Shah S, Clark BS, Cayouette M. Sci Rep. 2021 Feb 16;11(1):3858. doi: 10.1038/s41598-021-83395-7. PubMed |
| Interactome Mapping of eIF3A in a Colon Cancer and an Immortalized Embryonic Cell Line Using Proximity-Dependent Biotin Identification. Vo DK, Engler A, Stoimenovski D, Hartig R, Kaehne T, Kalinski T, Naumann M, Haybaeck J, Nass N. Cancers (Basel). 2021 Mar 14;13(6). pii: cancers13061293. doi: 10.3390/cancers13061293. PubMed |
| Using BioID to Characterize the RAS Interactome. Adhikari H, Counter CM. Methods Mol Biol. 2021;2262:271-280. doi: 10.1007/978-1-0716-1190-6_16. PubMed |
| alpha-Synuclein A53T Binds to Transcriptional Adapter 2-Alpha and Blocks Histone H3 Acetylation. Lee JY, Kim H, Jo A, Khang R, Park CH, Park SJ, Kwag E, Shin JH. Int J Mol Sci. 2021 May 20;22(10). pii: ijms22105392. doi: 10.3390/ijms22105392. PubMed |
| Nestin Is Required for Spindle Assembly and Cell-Cycle Progression in Glioblastoma Cells. Wang Q, Wu H, Hu J, Fu H, Qu Y, Yang Y, Cai KQ, Efimov A, Wu M, Yen T, Wang Y, Yang ZJ. Mol Cancer Res. 2021 Oct;19(10):1651-1665. doi: 10.1158/1541-7786.MCR-20-0994. Epub 2021 Jun 22. PubMed |
| AF10 (MLLT10) prevents somatic cell reprogramming through regulation of DOT1L-mediated H3K79 methylation. Ugurlu-Cimen D, Odluyurt D, Sevinc K, Ozkan-Kucuk NE, Ozcimen B, Demirtas D, Enustun E, Aztekin C, Philpott M, Oppermann U, Ozlu N, Onder TT. Epigenetics Chromatin. 2021 Jul 2;14(1):32. doi: 10.1186/s13072-021-00406-7. PubMed |
| Shifting proteomes: limitations in using the BioID proximity labeling system to study SNARE protein trafficking during infection with intracellular pathogens. Jorgenson LM, Olson-Wood MG, Rucks EA. Pathog Dis. 2021 Aug 20;79(7). pii: 6330454. doi: 10.1093/femspd/ftab039. PubMed |
| Proximity Interactome Map of the Vac14-Fig4 Complex Using BioID. Qiu S, Lavallee-Adam M, Cote M. J Proteome Res. 2021 Nov 5;20(11):4959-4973. doi: 10.1021/acs.jproteome.1c00408. Epub 2021 Sep 23. PubMed |
| The comprehensive interactomes of human adenosine RNA methyltransferases and demethylases reveal distinct functional and regulatory features. Covelo-Molares H, Obrdlik A, Postulkova I, Dohnalkova M, Gregorova P, Ganji R, Potesil D, Gawriyski L, Varjosalo M, Vanacova S. Nucleic Acids Res. 2021 Nov 8;49(19):10895-10910. doi: 10.1093/nar/gkab900. PubMed |
| iASPP contributes to cell cortex rigidity, mitotic cell rounding, and spindle positioning. Mangon A, Salaun D, Bouali ML, Kuzmic M, Quitard S, Thuault S, Isnardon D, Audebert S, Puech PH, Verdier-Pinard P, Badache A. J Cell Biol. 2021 Dec 6;220(12). pii: 212730. doi: 10.1083/jcb.202012002. Epub 2021 Oct 27. PubMed |
| A proximity proteomics screen in three-dimensional spheroid cultures identifies novel regulators of lumen formation. Wang LT, Proulx ME, Kim AD, Lelarge V, McCaffrey L. Sci Rep. 2021 Nov 23;11(1):22807. doi: 10.1038/s41598-021-02178-2. PubMed |
| Proximity proteomics of C9orf72 dipeptide repeat proteins identifies molecular chaperones as modifiers of poly-GA aggregation. Liu F, Morderer D, Wren MC, Vettleson-Trutza SA, Wang Y, Rabichow BE, Salemi MR, Phinney BS, Oskarsson B, Dickson DW, Rossoll W. Acta Neuropathol Commun. 2022 Feb 14;10(1):22. doi: 10.1186/s40478-022-01322-x. PubMed |
| UCHL1 protects against ischemic heart injury via activating HIF-1alpha signal pathway. Geng B, Wang X, Park KH, Lee KE, Kim J, Chen P, Zhou X, Tan T, Yang C, Zou X, Janssen PM, Cao L, Ye L, Wang X, Cai C, Zhu H. Redox Biol. 2022 Jun;52:102295. doi: 10.1016/j.redox.2022.102295. Epub 2022 Mar 18. PubMed |
| Identification of the interacting partners of a lysosomal membrane protein in living cells by BioID technique. Nguyen-Tien D, Suzuki T, Kobayashi T, Toyama-Sorimachi N, Dohmae N. STAR Protoc. 2022 Mar 31;3(2):101263. doi: 10.1016/j.xpro.2022.101263. eCollection 2022 Jun 17. PubMed |
| CMYA5 establishes cardiac dyad architecture and positioning. Lu F, Ma Q, Xie W, Liou CL, Zhang D, Sweat ME, Jardin BD, Naya FJ, Guo Y, Cheng H, Pu WT. Nat Commun. 2022 Apr 21;13(1):2185. doi: 10.1038/s41467-022-29902-4. PubMed |
| Insight into the function of a unique voltage-sensor protein (TMEM266) and its short form in mouse cerebellum. Kawai T, Narita H, Konno K, Akter S, Andriani RT, Iwasaki H, Nishikawa S, Yokoi N, Fukata Y, Fukata M, Wiriyasermkul P, Kongpracha P, Nagamori S, Takao K, Miyakawa T, Abe M, Sakimura K, Watanabe M, Nakagawa A, Okamura Y. Biochem J. 2022 Jun 17;479(11):1127-1145. doi: 10.1042/BCJ20220033. PubMed |
| AT-hook DNA-binding motif-containing protein one knockdown downregulates EWS-FLI1 transcriptional activity in Ewing's sarcoma cells. Kitagawa T, Kobayashi D, Baron B, Okita H, Miyamoto T, Takai R, Paudel D, Ohta T, Asaoka Y, Tokunaga M, Nakagawa K, Furutani-Seiki M, Araki N, Kuramitsu Y, Kobayashi M. PLoS One. 2022 Oct 4;17(10):e0269077. doi: 10.1371/journal.pone.0269077. eCollection 2022. PubMed |
| Pharmacological targeting of the mitochondrial calcium-dependent potassium channel KCa3.1 triggers cell death and reduces tumor growth and metastasis in vivo. Bachmann M, Rossa A, Varanita T, Fioretti B, Biasutto L, Milenkovic S, Checchetto V, Peruzzo R, Ahmad SA, Patel SH, Lukowski R, Edwards MJ, Ceccarelli M, Gulbins E, Zoratti M, Mattarei A, Szabo I. Cell Death Dis. 2022 Dec 20;13(12):1055. doi: 10.1038/s41419-022-05463-8. PubMed |
| Cytoskeletal association of ATP citrate lyase controls the mechanodynamics of macropinocytosis. Puccini J, Wei J, Tong L, Bar-Sagi D. Proc Natl Acad Sci U S A. 2023 Feb 21;120(8):e2213272120. doi: 10.1073/pnas.2213272120. Epub 2023 Feb 14. PubMed |
| Proteomic investigation of neural stem cell to oligodendrocyte precursor cell differentiation reveals phosphorylation-dependent Dclk1 processing. Hardt R, Dehghani A, Schoor C, Godderz M, Cengiz Winter N, Ahmadi S, Sharma R, Schork K, Eisenacher M, Gieselmann V, Winter D. Cell Mol Life Sci. 2023 Aug 18;80(9):260. doi: 10.1007/s00018-023-04892-8. PubMed |
| 3D matrix adhesion feedback controls nuclear force coupling to drive invasive cell migration. Newman D, Young LE, Waring T, Brown L, Wolanska KI, MacDonald E, Charles-Orszag A, Goult BT, Caswell PT, Sakuma T, Yamamoto T, Machesky LM, Morgan MR, Zech T. Cell Rep. 2023 Dec 26;42(12):113554. doi: 10.1016/j.celrep.2023.113554. Epub 2023 Dec 14. PubMed |
| Proximity Mapping of Desmosomes Reveals a Striking Shift in Their Molecular Neighborhood Associated With Maturation. Fulle JB, de Almeida RA, Lawless C, Stockdale L, Yanes B, Lane EB, Garrod DR, Ballestrem C. Mol Cell Proteomics. 2024 Mar;23(3):100735. doi: 10.1016/j.mcpro.2024.100735. Epub 2024 Feb 10. PubMed |
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