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pEGIP Citations (35)

Originally described in: Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells.
Zou J, Maeder ML, Mali P, Pruett-Miller SM, Thibodeau-Beganny S, Chou BK, Chen G, Ye Z, Park IH, Daley GQ, Porteus MH, Joung JK, Cheng L Cell Stem Cell. 2009 Jul 2. 5(1):97-110. PubMed Journal

Articles Citing pEGIP

Articles
CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Mali P, Aach J, Stranges PB, Esvelt KM, Moosburner M, Kosuri S, Yang L, Church GM. Nat Biotechnol. 2013 Aug 1. doi: 10.1038/nbt.2675. PubMed

Associated Plasmids
Effect of chromatographic conditions and plasmid DNA size on the dynamic binding capacity of a monolithic support. Bicho D, Sousa A, Sousa F, Queiroz J, Tomaz C. J Sep Sci. 2014 Sep;37(17):2284-92. doi: 10.1002/jssc.201400127. Epub 2014 Jul 10. PubMed
Multi-kilobase homozygous targeted gene replacement in human induced pluripotent stem cells. Byrne SM, Ortiz L, Mali P, Aach J, Church GM. Nucleic Acids Res. 2015 Feb 18;43(3):e21. doi: 10.1093/nar/gku1246. Epub 2014 Nov 20. PubMed
Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach. Chari R, Mali P, Moosburner M, Church GM. Nat Methods. 2015 Sep;12(9):823-6. doi: 10.1038/nmeth.3473. Epub 2015 Jul 13. PubMed
Gene expression profiling for human iPS-derived motor neurons from sporadic ALS patients reveals a strong association between mitochondrial functions and neurodegeneration. Alves CJ, Dariolli R, Jorge FM, Monteiro MR, Maximino JR, Martins RS, Strauss BE, Krieger JE, Callegaro D, Chadi G. Front Cell Neurosci. 2015 Aug 4;9:289. doi: 10.3389/fncel.2015.00289. eCollection 2015. PubMed
Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo. Yin H, Song CQ, Dorkin JR, Zhu LJ, Li Y, Wu Q, Park A, Yang J, Suresh S, Bizhanova A, Gupta A, Bolukbasi MF, Walsh S, Bogorad RL, Gao G, Weng Z, Dong Y, Koteliansky V, Wolfe SA, Langer R, Xue W, Anderson DG. Nat Biotechnol. 2016 Feb 1. doi: 10.1038/nbt.3471. PubMed

Associated Plasmids
Analysis of Nuclear Lamina Proteins in Myoblast Differentiation by Functional Complementation. Tapia O, Gerace L. Methods Mol Biol. 2016;1411:177-94. doi: 10.1007/978-1-4939-3530-7_11. PubMed
A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage. Xue Z, Hennelly S, Doyle B, Gulati AA, Novikova IV, Sanbonmatsu KY, Boyer LA. Mol Cell. 2016 Oct 6;64(1):37-50. doi: 10.1016/j.molcel.2016.08.010. Epub 2016 Sep 8. PubMed
Interspecies Chimerism with Mammalian Pluripotent Stem Cells. Wu J, Platero-Luengo A, Sakurai M, Sugawara A, Gil MA, Yamauchi T, Suzuki K, Bogliotti YS, Cuello C, Morales Valencia M, Okumura D, Luo J, Vilarino M, Parrilla I, Soto DA, Martinez CA, Hishida T, Sanchez-Bautista S, Martinez-Martinez ML, Wang H, Nohalez A, Aizawa E, Martinez-Redondo P, Ocampo A, Reddy P, Roca J, Maga EA, Esteban CR, Berggren WT, Nunez Delicado E, Lajara J, Guillen I, Guillen P, Campistol JM, Martinez EA, Ross PJ, Izpisua Belmonte JC. Cell. 2017 Jan 26;168(3):473-486.e15. doi: 10.1016/j.cell.2016.12.036. PubMed
Neuroprotective and regenerative roles of intranasal Wnt-3a administration after focal ischemic stroke in mice. Wei ZZ, Zhang JY, Taylor TM, Gu X, Zhao Y, Wei L. J Cereb Blood Flow Metab. 2018 Mar;38(3):404-421. doi: 10.1177/0271678X17702669. Epub 2017 Apr 21. PubMed
Generation and characterization of transgenic mouse mesenchymal stem cell lines expressing hIGF-1 or hG-CSF. Goncalves GVM, Silva DN, Carvalho RH, Souza BSF, da Silva KN, Vasconcelos JF, Paredes BD, Nonaka CKV, Ribeiro-Dos-Santos R, Soares MBP. Cytotechnology. 2018 Apr;70(2):577-591. doi: 10.1007/s10616-017-0131-2. Epub 2017 Sep 2. PubMed
Transplantation of iPS cell-derived neural progenitors overexpressing SDF-1alpha increases regeneration and functional recovery after ischemic stroke. Chau M, Deveau TC, Song M, Wei ZZ, Gu X, Yu SP, Wei L. Oncotarget. 2017 Oct 31;8(57):97537-97553. doi: 10.18632/oncotarget.22180. eCollection 2017 Nov 14. PubMed
Partial DNA-guided Cas9 enables genome editing with reduced off-target activity. Yin H, Song CQ, Suresh S, Kwan SY, Wu Q, Walsh S, Ding J, Bogorad RL, Zhu LJ, Wolfe SA, Koteliansky V, Xue W, Langer R, Anderson DG. Nat Chem Biol. 2018 Mar;14(3):311-316. doi: 10.1038/nchembio.2559. Epub 2018 Jan 29. PubMed
Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair. Savic N, Ringnalda FC, Lindsay H, Berk C, Bargsten K, Li Y, Neri D, Robinson MD, Ciaudo C, Hall J, Jinek M, Schwank G. Elife. 2018 May 29;7. pii: 33761. doi: 10.7554/eLife.33761. PubMed

Associated Plasmids
Vascularization and Engraftment of Transplanted Human Cerebral Organoids in Mouse Cortex. Daviaud N, Friedel RH, Zou H. eNeuro. 2018 Nov 20;5(6). pii: eN-NWR-0219-18. doi: 10.1523/ENEURO.0219-18.2018. eCollection 2018 Nov-Dec. PubMed
Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells. Nakanishi M, Mitchell RR, Benoit YD, Orlando L, Reid JC, Shimada K, Davidson KC, Shapovalova Z, Collins TJ, Nagy A, Bhatia M. Cell. 2019 May 2;177(4):910-924.e22. doi: 10.1016/j.cell.2019.03.013. Epub 2019 Apr 11. PubMed
Rationally Designed Anti-CRISPR Nucleic Acid Inhibitors of CRISPR-Cas9. Barkau CL, O'Reilly D, Rohilla KJ, Damha MJ, Gagnon KT. Nucleic Acid Ther. 2019 Jun;29(3):136-147. doi: 10.1089/nat.2018.0758. Epub 2019 Apr 16. PubMed
Optochemogenetics Stimulation of Transplanted iPS-NPCs Enhances Neuronal Repair and Functional Recovery after Ischemic Stroke. Ping Yu S, Tung JK, Wei ZZ, Chen D, Berglund K, Zhong W, Zhang JY, Gu X, Song M, Gross RE, Lin SZ, Wei L. J Neurosci. 2019 Jul 1. pii: JNEUROSCI.2010-18.2019. doi: 10.1523/JNEUROSCI.2010-18.2019. PubMed
Mesothelial Cell HIF1alpha Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk. Hart PC, Kenny HA, Grassl N, Watters KM, Litchfield LM, Coscia F, Blazenovic I, Ploetzky L, Fiehn O, Mann M, Lengyel E, Romero IL. Cell Rep. 2019 Dec 17;29(12):4086-4098.e6. doi: 10.1016/j.celrep.2019.11.079. PubMed
Phenotype instability of hepatocyte-like cells produced by direct reprogramming of mesenchymal stromal cells. Orge ID, Gadd VL, Barouh JL, Rossi EA, Carvalho RH, Smith I, Allahdadi KJ, Paredes BD, Silva DN, Damasceno PKF, Sampaio GL, Forbes SJ, Soares MBP, Souza BSF. Stem Cell Res Ther. 2020 Apr 10;11(1):154. doi: 10.1186/s13287-020-01665-z. PubMed
Effects of IGF-1 on Proliferation, Angiogenesis, Tumor Stem Cell Populations and Activation of AKT and Hedgehog Pathways in Oral Squamous Cell Carcinoma. Ferreira Mendes JM, de Faro Valverde L, Torres Andion Vidal M, Paredes BD, Coelho P, Allahdadi KJ, Coletta RD, Souza BSF, Rocha CAG. Int J Mol Sci. 2020 Sep 5;21(18). pii: ijms21186487. doi: 10.3390/ijms21186487. PubMed
Leukemia Inhibitory Factor (LIF) Overexpression Increases the Angiogenic Potential of Bone Marrow Mesenchymal Stem/Stromal Cells. Santos GC, Silva DN, Fortuna V, Silveira BM, Orge ID, de Santana TA, Sampaio GL, Paredes BD, Ribeiro-Dos-Santos R, Soares MBP. Front Cell Dev Biol. 2020 Aug 14;8:778. doi: 10.3389/fcell.2020.00778. eCollection 2020. PubMed
Phenotypic landscape of intestinal organoid regeneration. Lukonin I, Serra D, Challet Meylan L, Volkmann K, Baaten J, Zhao R, Meeusen S, Colman K, Maurer F, Stadler MB, Jenkins J, Liberali P. Nature. 2020 Oct;586(7828):275-280. doi: 10.1038/s41586-020-2776-9. Epub 2020 Oct 7. PubMed
Rapid isolation of lentivirus particles from cell culture media via a hydrophobic interaction chromatography method on a polyester, capillary-channeled polymer fiber stationary phase. Huang S, Bruce TF, Ding H, Wei Y, Marcus RK. Anal Bioanal Chem. 2021 May;413(11):2985-2994. doi: 10.1007/s00216-021-03232-8. Epub 2021 Feb 19. PubMed
Conversion of Reactive Astrocytes to Induced Neurons Enhances Neuronal Repair and Functional Recovery After Ischemic Stroke. Jiang MQ, Yu SP, Wei ZZ, Zhong W, Cao W, Gu X, Wu A, McCrary MR, Berglund K, Wei L. Front Aging Neurosci. 2021 Mar 26;13:612856. doi: 10.3389/fnagi.2021.612856. eCollection 2021. PubMed
High Frequency of Tumor Propagating Cells in Fusion-Positive Rhabdomyosarcoma. Generali M, Satheesha S, Bode PK, Wanner D, Schafer BW, Casanova EA. Genes (Basel). 2021 Aug 31;12(9). pii: genes12091373. doi: 10.3390/genes12091373. PubMed
Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles. Ageely EA, Chilamkurthy R, Jana S, Abdullahu L, O'Reilly D, Jensik PJ, Damha MJ, Gagnon KT. Nat Commun. 2021 Nov 15;12(1):6591. doi: 10.1038/s41467-021-26989-z. PubMed
Amelioration of SARS-CoV-2 infection by ANO6 phospholipid scramblase inhibition. Sim JR, Shin DH, Park PG, Park SH, Bae JY, Lee Y, Kang DY, Kim YJ, Aum S, Noh SH, Hwang SJ, Cha HR, Kim CB, Ko SH, Park S, Jeon D, Cho S, Lee GE, Kim J, Moon YH, Kim JO, Nam JS, Kim CH, Moon S, Chung YW, Park MS, Ryu JH, Namkung W, Lee JM, Lee MG. Cell Rep. 2022 Jul 19;40(3):111117. doi: 10.1016/j.celrep.2022.111117. Epub 2022 Jul 4. PubMed
Targeting fatty acid oxidation via Acyl-CoA binding protein hinders glioblastoma invasion. Duman C, Di Marco B, Nevedomskaya E, Ulug B, Lesche R, Christian S, Alfonso J. Cell Death Dis. 2023 Apr 29;14(4):296. doi: 10.1038/s41419-023-05813-0. PubMed
Systematic discovery of transcription factors that improve hPSC-derived cardiomyocyte maturation via temporal analysis of bioengineered cardiac tissues. Kumar A, He S, Mali P. APL Bioeng. 2023 May 25;7(2):026109. doi: 10.1063/5.0137458. eCollection 2023 Jun. PubMed
Circadian clock regulator Bmal1 gates axon regeneration via Tet3 epigenetics in mouse sensory neurons. Halawani D, Wang Y, Ramakrishnan A, Estill M, He X, Shen L, Friedel RH, Zou H. Nat Commun. 2023 Aug 24;14(1):5165. doi: 10.1038/s41467-023-40816-7. PubMed

Associated Plasmids
Long-term monitoring of COVID-19 prevalence in raw and treated wastewater in Salvador, the largest capital of the Brazilian Northeast. de Araujo Rolo C, Machado BAS, Dos Santos MC, Dos Santos RF, Fonseca MS, Hodel KVS, Silva JR, Nunes DDG, Dos Santos Almeida E, de Andrade JB. Sci Rep. 2023 Sep 14;13(1):15238. doi: 10.1038/s41598-023-41060-1. PubMed
Functional comparisons of the virus sensor RIG-I from humans, the microbat Myotis daubentonii, and the megabat Rousettus aegyptiacus, and their response to SARS-CoV-2 infection. Schoen A, Holzer M, Muller MA, Wallerang KB, Drosten C, Marz M, Lamp B, Weber F. J Virol. 2023 Oct 31;97(10):e0020523. doi: 10.1128/jvi.00205-23. Epub 2023 Sep 20. PubMed
The dynamics of the electrotactic reaction of mouse 3T3 fibroblasts. Lasota S, Zimolag E, Bobis-Wozowicz S, Pilipiuk J, Madeja Z. Biochim Biophys Acta Mol Cell Res. 2024 Feb;1871(2):119647. doi: 10.1016/j.bbamcr.2023.119647. Epub 2023 Dec 11. PubMed
Overexpression of Wnt5a promoted the protective effect of mesenchymal stem cells on Lipopolysaccharide-induced endothelial cell injury via activating PI3K/AKT signaling pathway. Guo M, Li S, Li C, Mao X, Tian L, Yang X, Xu C, Zeng M. BMC Infect Dis. 2024 Mar 20;24(1):335. doi: 10.1186/s12879-024-09204-4. PubMed

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