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pDIRE Citations (16)

Originally described in: Dual RMCE for efficient re-engineering of mouse mutant alleles
Osterwalder M, Galli A, Rosen B, Skarnes WC, Zeller R, Lopez-Rios J. Nat Methods. 2010 Oct 17 PubMed Journal

Articles Citing pDIRE

Articles
Flp and Cre expressed from Flp-2A-Cre and Flp-IRES-Cre transcription units mediate the highest level of dual recombinase-mediated cassette exchange. Anderson RP, Voziyanova E, Voziyanov Y. Nucleic Acids Res. 2012 Apr 1;40(8):e62. Epub 2012 Jan 23. PubMed
A piggyBac transposon- and gateway-enhanced system for efficient BAC transgenesis. Zhao L, Ng ET, Koopman P. Dev Dyn. 2014 Jun 12. doi: 10.1002/dvdy.24153. PubMed

Associated Plasmids
Digital switching in a biosensor circuit via programmable timing of gene availability. Lapique N, Benenson Y. Nat Chem Biol. 2014 Dec;10(12):1020-7. doi: 10.1038/nchembio.1680. Epub 2014 Oct 14. PubMed
Engineering Human Stem Cell Lines with Inducible Gene Knockout using CRISPR/Cas9. Chen Y, Cao J, Xiong M, Petersen AJ, Dong Y, Tao Y, Huang CT, Du Z, Zhang SC. Cell Stem Cell. 2015 Jul 1. pii: S1934-5909(15)00261-1. doi: 10.1016/j.stem.2015.06.001. PubMed

Associated Plasmids
The Macrophage-Specific Promoter mfap4 Allows Live, Long-Term Analysis of Macrophage Behavior during Mycobacterial Infection in Zebrafish. Walton EM, Cronan MR, Beerman RW, Tobin DM. PLoS One. 2015 Oct 7;10(10):e0138949. doi: 10.1371/journal.pone.0138949. eCollection 2015. PubMed

Associated Plasmids
Fshb-iCre mice are efficient and specific Cre deleters for the gonadotrope lineage. Wang H, Hastings R, Miller WL, Kumar TR. Mol Cell Endocrinol. 2016 Jan 5;419:124-38. doi: 10.1016/j.mce.2015.10.006. Epub 2015 Oct 22. PubMed
Dissection of zebrafish shha function using site-specific targeting with a Cre-dependent genetic switch. Sugimoto K, Hui SP, Sheng DZ, Kikuchi K. Elife. 2017 May 17;6. pii: e24635. doi: 10.7554/eLife.24635. PubMed
The transcription factor Klf5 is essential for intrahepatic biliary epithelial tissue remodeling after cholestatic liver injury. Okada H, Yamada M, Kamimoto K, Kok CY, Kaneko K, Ema M, Miyajima A, Itoh T. J Biol Chem. 2018 Apr 27;293(17):6214-6229. doi: 10.1074/jbc.RA118.002372. Epub 2018 Mar 9. PubMed
Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo. Khoriaty R, Hesketh GG, Bernard A, Weyand AC, Mellacheruvu D, Zhu G, Hoenerhoff MJ, McGee B, Everett L, Adams EJ, Zhang B, Saunders TL, Nesvizhskii AI, Klionsky DJ, Shavit JA, Gingras AC, Ginsburg D. Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):E7748-E7757. doi: 10.1073/pnas.1805784115. Epub 2018 Jul 31. PubMed
Mapping projections of molecularly defined dopamine neuron subtypes using intersectional genetic approaches. Poulin JF, Caronia G, Hofer C, Cui Q, Helm B, Ramakrishnan C, Chan CS, Dombeck DA, Deisseroth K, Awatramani R. Nat Neurosci. 2018 Sep;21(9):1260-1271. doi: 10.1038/s41593-018-0203-4. Epub 2018 Aug 13. PubMed
Genes A27L and F13L as Genetic Markers for the Isolation of Recombinant Vaccinia Virus. Lorenzo MM, Sanchez-Puig JM, Blasco R. Sci Rep. 2019 Oct 30;9(1):15684. doi: 10.1038/s41598-019-52053-4. PubMed
Tau interactome analyses in CRISPR-Cas9 engineered neuronal cells reveal ATPase-dependent binding of wild-type but not P301L Tau to non-muscle myosins. Wang X, Williams D, Muller I, Lemieux M, Dukart R, Maia IBL, Wang H, Woerman AL, Schmitt-Ulms G. Sci Rep. 2019 Nov 7;9(1):16238. doi: 10.1038/s41598-019-52543-5. PubMed
Multidimensional imaging of liver injury repair in mice reveals fundamental role of the ductular reaction. Kamimoto K, Nakano Y, Kaneko K, Miyajima A, Itoh T. Commun Biol. 2020 Jun 5;3(1):289. doi: 10.1038/s42003-020-1006-1. PubMed
Human Stem Cell-Derived Neurons Repair Circuits and Restore Neural Function. Xiong M, Tao Y, Gao Q, Feng B, Yan W, Zhou Y, Kotsonis TA, Yuan T, You Z, Wu Z, Xi J, Haberman A, Graham J, Block J, Zhou W, Chen Y, Zhang SC. Cell Stem Cell. 2020 Sep 16. pii: S1934-5909(20)30410-0. doi: 10.1016/j.stem.2020.08.014. PubMed

Associated Plasmids
Murine SEC24D can substitute functionally for SEC24C during embryonic development. Adams EJ, Khoriaty R, Kiseleva A, Cleuren ACA, Tomberg K, van der Ent MA, Gergics P, Tang VT, Zhu G, Hoenerhoff MJ, O'Shea KS, Saunders TL, Ginsburg D. Sci Rep. 2021 Oct 26;11(1):21100. doi: 10.1038/s41598-021-00579-x. PubMed
Tuning the 3D microenvironment of reprogrammed tubule cells enhances biomimetic modeling of polycystic kidney disease. Pichler R, Rizzo L, Trondle K, Buhler M, Brucker H, Muller AL, Grand K, Fare S, Viau A, Kaminski MM, Kuehn EW, Koch F, Zimmermann S, Koltay P, Lienkamp SS. Biomaterials. 2022 Dec;291:121910. doi: 10.1016/j.biomaterials.2022.121910. Epub 2022 Nov 8. PubMed

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