pGEM-3z/601 Citations (17)
Originally described in: New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.Lowary PT, Widom J J Mol Biol. 1998 Feb 13. 276(1):19-42. PubMed Journal
Articles Citing pGEM-3z/601
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| Nucleosomes undergo slow spontaneous gaping. Ngo TT, Ha T. Nucleic Acids Res. 2015 Apr 30;43(8):3964-71. doi: 10.1093/nar/gkv276. Epub 2015 Mar 30. PubMed |
| Biophysical Characterization of Chromatin Remodeling Protein CHD4. Morra R, Fessl T, Wang Y, Mancini EJ, Tuma R. Methods Mol Biol. 2016;1431:175-93. doi: 10.1007/978-1-4939-3631-1_14. PubMed |
| The ATP-dependent chromatin remodeling enzymes CHD6, CHD7, and CHD8 exhibit distinct nucleosome binding and remodeling activities. Manning BJ, Yusufzai T. J Biol Chem. 2017 Jul 14;292(28):11927-11936. doi: 10.1074/jbc.M117.779470. Epub 2017 May 21. PubMed |
| Nanoscale dynamics of centromere nucleosomes and the critical roles of CENP-A. Stumme-Diers MP, Banerjee S, Hashemi M, Sun Z, Lyubchenko YL. Nucleic Acids Res. 2018 Jan 9;46(1):94-103. doi: 10.1093/nar/gkx933. PubMed |
| Probing The Structure And Dynamics Of Nucleosomes Using Atomic Force Microscopy Imaging. Stumme-Diers MP, Stormberg T, Sun Z, Lyubchenko YL. J Vis Exp. 2019 Jan 31;(143). doi: 10.3791/58820. PubMed |
| High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier. Chen Z, Gabizon R, Brown AI, Lee A, Song A, Diaz-Celis C, Kaplan CD, Koslover EF, Yao T, Bustamante C. Elife. 2019 Jul 31;8. pii: 48281. doi: 10.7554/eLife.48281. PubMed |
| DNA accessibility of chromatosomes quantified by automated image analysis of AFM data. Wurtz M, Aumiller D, Gundelwein L, Jung P, Schutz C, Lehmann K, Toth K, Rohr K. Sci Rep. 2019 Sep 4;9(1):12788. doi: 10.1038/s41598-019-49163-4. PubMed |
| Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners. Melters DP, Pitman M, Rakshit T, Dimitriadis EK, Bui M, Papoian GA, Dalal Y. Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24066-24074. doi: 10.1073/pnas.1911880116. Epub 2019 Nov 11. PubMed |
PALI1 facilitates DNA and nucleosome binding by PRC2 and triggers an allosteric activation of catalysis.
Zhang Q, Agius SC, Flanigan SF, Uckelmann M, Levina V, Owen BM, Davidovich C.
Nat Commun. 2021 Jul 28;12(1):4592. doi: 10.1038/s41467-021-24866-3.
PubMed
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| Approaches to Study Native Chromatin-Modifying Complex Activities and Functions. Galloy M, Lachance C, Cheng X, Distefano-Gagne F, Cote J, Fradet-Turcotte A. Front Cell Dev Biol. 2021 Sep 16;9:729338. doi: 10.3389/fcell.2021.729338. eCollection 2021. PubMed |
| The fork protection complex recruits FACT to reorganize nucleosomes during replication. Safaric B, Chacin E, Scherr MJ, Rajappa L, Gebhardt C, Kurat CF, Cordes T, Duderstadt KE. Nucleic Acids Res. 2022 Feb 22;50(3):1317-1334. doi: 10.1093/nar/gkac005. PubMed |
Compartmentalization of telomeres through DNA-scaffolded phase separation.
Jack A, Kim Y, Strom AR, Lee DSW, Williams B, Schaub JM, Kellogg EH, Finkelstein IJ, Ferro LS, Yildiz A, Brangwynne CP.
Dev Cell. 2022 Jan 24;57(2):277-290.e9. doi: 10.1016/j.devcel.2021.12.017.
PubMed
Associated Plasmids |
| INVESTIGATION OF THE PATHOLOGICAL EFFECTS OF HISTONES, DNA, AND NUCLEOSOMES IN A MURINE MODEL OF SEPSIS. Medeiros SK, Sharma N, Dwivedi D, Liaw PC. Shock. 2023 Aug 1;60(2):291-297. doi: 10.1097/SHK.0000000000002165. Epub 2023 Jun 18. PubMed |
| DNA-translocation-independent role of INO80 remodeler in DNA damage repairs. Sokolova V, Lee G, Mullins A, Mody P, Watanabe S, Tan D. J Biol Chem. 2023 Oct;299(10):105245. doi: 10.1016/j.jbc.2023.105245. Epub 2023 Sep 9. PubMed |
| Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Frisbie VS, Hashimoto H, Xie Y, De Luna Vitorino FN, Baeza J, Nguyen T, Yuan Z, Kiselar J, Garcia BA, Debler EW. Nat Commun. 2024 Mar 19;15(1):2467. doi: 10.1038/s41467-024-46637-6. PubMed |
| Glutamylation of Npm2 and Nap1 acidic disordered regions increases DNA mimicry and histone chaperone efficiency. Lorton BM, Warren C, Ilyas H, Nandigrami P, Hegde S, Cahill S, Lehman SM, Shabanowitz J, Hunt DF, Fiser A, Cowburn D, Shechter D. iScience. 2024 Mar 8;27(4):109458. doi: 10.1016/j.isci.2024.109458. eCollection 2024 Apr 19. PubMed |
| Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography. Zhang M, Diaz-Celis C, Liu J, Tao J, Ashby PD, Bustamante C, Ren G. Nat Commun. 2024 May 23;15(1):4395. doi: 10.1038/s41467-024-48305-1. PubMed |
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