Seattle_IPDA_control_6_002
(Plasmid
#167348)
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PurposeddPCR gating control for droplets containing either gag+5'pol targets OR 3'pol+tat targets
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Depositing Lab
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Sequence Information
Ordering
Item | Catalog # | Description | Quantity | Price (USD) | |
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Plasmid | 167348 | Standard format: Plasmid sent in bacteria as agar stab | 1 | $85 |
Backbone
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Vector backbonepUCIDT Amp
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Backbone manufacturerIDT
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Vector typeOther
Growth in Bacteria
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Bacterial Resistance(s)Ampicillin, 100 μg/mL
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Growth Temperature37°C
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Growth Strain(s)DH5alpha
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Copy numberHigh Copy
Gene/Insert
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Gene/Insert namepol_gag_tat
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SpeciesHIV-1
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Insert Size (bp)436
Cloning Information
- Cloning method Restriction Enzyme
- 5′ cloning site SalI (not destroyed)
- 3′ cloning site SalI (destroyed during cloning)
- 5′ sequencing primer M13
- 3′ sequencing primer M13 (Common Sequencing Primers)
Resource Information
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A portion of this plasmid was derived from a plasmid made bybased on concensus sequence from HIV-1 clade B sequences from LANL
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Articles Citing this Plasmid
Terms and Licenses
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Academic/Nonprofit Terms
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Industry Terms
- Not Available to Industry
Trademarks:
- Zeocin® is an InvivoGen trademark.
Depositor Comments
This plasmid has partial sequences for 3 different HIV-1 clade B genes. This plasmid is made by cutting out one of the targets from the Seattle_IPDA_control_1_001 plasmid using SalI-HF. partial sequences for 4 HIV-1 clade B targets: 5'pol, 3'pol, tat and gag
These plasmids were created by your colleagues. Please acknowledge the Principal Investigator, cite the article in which the plasmids were described, and include Addgene in the Materials and Methods of your future publications.
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For your Materials & Methods section:
Seattle_IPDA_control_6_002 was a gift from Florian Hladik (Addgene plasmid # 167348 ; http://n2t.net/addgene:167348 ; RRID:Addgene_167348) -
For your References section:
A highly multiplexed droplet digital PCR assay to measure the intact HIV-1 proviral reservoir. Levy CN, Hughes SM, Roychoudhury P, Reeves DB, Amstuz C, Zhu H, Huang ML, Wei Y, Bull ME, Cassidy NAJ, McClure J, Frenkel LM, Stone M, Bakkour S, Wonderlich ER, Busch MP, Deeks SG, Schiffer JT, Coombs RW, Lehman DA, Jerome KR, Hladik F. Cell Rep Med. 2021 Apr 12;2(4):100243. doi: 10.1016/j.xcrm.2021.100243. eCollection 2021 Apr 20. 10.1016/j.xcrm.2021.100243 PubMed 33948574