PCR4-Shh::lacZ-H11 Citations (11)
Originally described in: Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.Kvon EZ, Zhu Y, Kelman G, Novak CS, Plajzer-Frick I, Kato M, Garvin TH, Pham Q, Harrington AN, Hunter RD, Godoy J, Meky EM, Akiyama JA, Afzal V, Tran S, Escande F, Gilbert-Dussardier B, Jean-Marcais N, Hudaiberdiev S, Ovcharenko I, Dobbs MB, Gurnett CA, Manouvrier-Hanu S, Petit F, Visel A, Dickel DE, Pennacchio LA Cell. 2020 Mar 6. pii: S0092-8674(20)30208-7. doi: 10.1016/j.cell.2020.02.031. PubMed Journal
Articles Citing PCR4-Shh::lacZ-H11
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| Ultraconserved enhancer function does not require perfect sequence conservation. Snetkova V, Ypsilanti AR, Akiyama JA, Mannion BJ, Plajzer-Frick I, Novak CS, Harrington AN, Pham QT, Kato M, Zhu Y, Godoy J, Meky E, Hunter RD, Shi M, Kvon EZ, Afzal V, Tran S, Rubenstein JLR, Visel A, Pennacchio LA, Dickel DE. Nat Genet. 2021 Apr;53(4):521-528. doi: 10.1038/s41588-021-00812-3. Epub 2021 Mar 29. PubMed |
| Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing. Osterwalder M, Tran S, Hunter RD, Meky EM, von Maydell K, Harrington AN, Godoy J, Novak CS, Plajzer-Frick I, Zhu Y, Akiyama JA, Afzal V, Kvon EZ, Pennacchio LA, Dickel DE, Visel A. Methods Mol Biol. 2022;2403:147-186. doi: 10.1007/978-1-0716-1847-9_11. PubMed |
| The functional and evolutionary impacts of human-specific deletions in conserved elements. Xue JR, Mackay-Smith A, Mouri K, Garcia MF, Dong MX, Akers JF, Noble M, Li X, Lindblad-Toh K, Karlsson EK, Noonan JP, Capellini TD, Brennand KJ, Tewhey R, Sabeti PC, Reilly SK. Science. 2023 Apr 28;380(6643):eabn2253. doi: 10.1126/science.abn2253. Epub 2023 Apr 28. PubMed |
| Cell Type- and Tissue-specific Enhancers in Craniofacial Development. Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, Akiyama JA, Afzal V, Tran S, Plajzer-Frick I, Novak CS, Kato M, Hunter RD, von Maydell K, Wang A, Lin L, Preissl S, Lisgo S, Ren B, Dickel DE, Pennacchio LA, Visel A. bioRxiv. 2023 Jun 26:2023.06.26.546603. doi: 10.1101/2023.06.26.546603. Preprint. PubMed |
| Scalable and Efficient Generation of Mouse Primordial Germ Cell-like Cells. Ding X, Li L, Gao J, Yi D, Schimenti JC. bioRxiv [Preprint]. 2024 Feb 15:2024.02.15.580543. doi: 10.1101/2024.02.15.580543. PubMed |
| Dynamic enhancer landscapes in human craniofacial development. Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, Akiyama JA, Afzal V, Tran S, Plajzer-Frick I, Novak CS, Kato M, Hunter RD, von Maydell K, Wang A, Lin L, Preissl S, Lisgo S, Ren B, Dickel DE, Pennacchio LA, Visel A. Nat Commun. 2024 Mar 6;15(1):2030. doi: 10.1038/s41467-024-46396-4. PubMed |
| Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity. Kosicki M, Cintron DL, Page NF, Georgakopoulos-Soares I, Akiyama JA, Plajzer-Frick I, Novak CS, Kato M, Hunter RD, von Maydell K, Barton S, Godfrey P, Beckman E, Sanders SJ, Pennacchio LA, Ahituv N. bioRxiv [Preprint]. 2024 Apr 23:2024.04.22.590634. doi: 10.1101/2024.04.22.590634. PubMed |
| Conserved Cis-Acting Range Extender Element Mediates Extreme Long-Range Enhancer Activity in Mammals. Bower G, Hollingsworth EW, Jacinto S, Clock B, Cao K, Liu M, Dziulko A, Alcaina-Caro A, Xu Q, Skowronska-Krawczyk D, Lopez-Rios J, Dickel DE, Bardet AF, Pennacchio LA, Visel A, Kvon EZ. bioRxiv [Preprint]. 2024 May 26:2024.05.26.595809. doi: 10.1101/2024.05.26.595809. PubMed |
| Rare variation in non-coding regions with evolutionary signatures contributes to autism spectrum disorder risk. Shin T, Song JHT, Kosicki M, Kenny C, Beck SG, Kelley L, Antony I, Qian X, Bonacina J, Papandile F, Gonzalez D, Scotellaro J, Bushinsky EM, Andersen RE, Maury E, Pennacchio LA, Doan RN, Walsh CA. Cell Genom. 2024 Aug 14;4(8):100609. doi: 10.1016/j.xgen.2024.100609. Epub 2024 Jul 16. PubMed |
| Mutagenesis Sensitivity Mapping of Human Enhancers In Vivo. Kosicki M, Zhang B, Pampari A, Akiyama JA, Plajzer-Frick I, Novak CS, Tran S, Zhu Y, Kato M, Hunter RD, von Maydell K, Barton S, Beckman E, Kundaje A, Dickel DE, Visel A, Pennacchio LA. bioRxiv [Preprint]. 2024 Sep 8:2024.09.06.611737. doi: 10.1101/2024.09.06.611737. PubMed |
| Evidence for Fgf and Wnt regulation of Lhx2 during limb development via two limb-specific Lhx2-associated cis-regulatory modules. Britton JC, Somogyi-Leatigaga A, Watson BA, Haro E, Mulder CG, Kennedy KD, Cooper AM, Whitley KL, Yeboah RL, Kim J, Yu MC, Campos JD, Amoah J, Kawauchi S, Kim E, Pira CU, Oberg KC. Front Cell Dev Biol. 2025 Feb 20;13:1552716. doi: 10.3389/fcell.2025.1552716. eCollection 2025. PubMed |
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