3xHA-TurboID-NLS_pCDNA3 Citations (26)
Originally described in: Efficient proximity labeling in living cells and organisms with TurboID.Branon TC, Bosch JA, Sanchez AD, Udeshi ND, Svinkina T, Carr SA, Feldman JL, Perrimon N, Ting AY Nat Biotechnol. 2018 Aug 20. pii: nbt.4201. doi: 10.1038/nbt.4201. PubMed Journal
Articles Citing 3xHA-TurboID-NLS_pCDNA3
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| SKIP-HOPS recruits TBC1D15 for a Rab7-to-Arl8b identity switch to control late endosome transport. Jongsma ML, Bakker J, Cabukusta B, Liv N, van Elsland D, Fermie J, Akkermans JL, Kuijl C, van der Zanden SY, Janssen L, Hoogzaad D, van der Kant R, Wijdeven RH, Klumperman J, Berlin I, Neefjes J. EMBO J. 2020 Mar 16;39(6):e102301. doi: 10.15252/embj.2019102301. Epub 2020 Feb 21. PubMed |
Comparative Application of BioID and TurboID for Protein-Proximity Biotinylation.
May DG, Scott KL, Campos AR, Roux KJ.
Cells. 2020 Apr 25;9(5). pii: cells9051070. doi: 10.3390/cells9051070.
PubMed
Associated Plasmids |
| Off-the-shelf proximity biotinylation for interaction proteomics. Santos-Barriopedro I, van Mierlo G, Vermeulen M. Nat Commun. 2021 Aug 18;12(1):5015. doi: 10.1038/s41467-021-25338-4. PubMed |
Identification of proximal SUMO-dependent interactors using SUMO-ID.
Barroso-Gomila O, Trulsson F, Muratore V, Canosa I, Merino-Cacho L, Cortazar AR, Perez C, Azkargorta M, Iloro I, Carracedo A, Aransay AM, Elortza F, Mayor U, Vertegaal ACO, Barrio R, Sutherland JD.
Nat Commun. 2021 Nov 18;12(1):6671. doi: 10.1038/s41467-021-26807-6.
PubMed
Associated Plasmids |
| CNNM proteins selectively bind to the TRPM7 channel to stimulate divalent cation entry into cells. Bai Z, Feng J, Franken GAC, Al'Saadi N, Cai N, Yu AS, Lou L, Komiya Y, Hoenderop JGJ, de Baaij JHF, Yue L, Runnels LW. PLoS Biol. 2021 Dec 20;19(12):e3001496. doi: 10.1371/journal.pbio.3001496. eCollection 2021 Dec. PubMed |
| Proximity labeling identifies a repertoire of site-specific R-loop modulators. Yan Q, Wulfridge P, Doherty J, Fernandez-Luna JL, Real PJ, Tang HY, Sarma K. Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6. PubMed |
| Optical Sensors and Actuators for Probing Proximity-Dependent Biotinylation in Living Cells. Chen R, Zhang N, Zhou Y, Jing J. Front Cell Neurosci. 2022 Feb 16;16:801644. doi: 10.3389/fncel.2022.801644. eCollection 2022. PubMed |
| Dense Granule Protein GRA64 Interacts with Host Cell ESCRT Proteins during Toxoplasma gondii Infection. Mayoral J, Guevara RB, Rivera-Cuevas Y, Tu V, Tomita T, Romano JD, Gunther-Cummins L, Sidoli S, Coppens I, Carruthers VB, Weiss LM. mBio. 2022 Aug 30;13(4):e0144222. doi: 10.1128/mbio.01442-22. Epub 2022 Jun 22. PubMed |
| BNIP-2 Activation of Cellular Contractility Inactivates YAP for H9c2 Cardiomyoblast Differentiation. Wong DCP, Xiao J, Chew TW, Pan M, Lee CJM, Ang JW, Yow I, Thivakar T, Ackers-Johnson M, Lee NJW, Foo RS, Kanchanawong P, Low BC. Adv Sci (Weinh). 2022 Nov;9(31):e2202834. doi: 10.1002/advs.202202834. Epub 2022 Aug 17. PubMed |
| TurboID Identification of Evolutionarily Divergent Components of the Nuclear Pore Complex in the Malaria Model Plasmodium berghei. Ambekar SV, Beck JR, Mair GR. mBio. 2022 Oct 26;13(5):e0181522. doi: 10.1128/mbio.01815-22. Epub 2022 Aug 30. PubMed |
| Failure of human rhombic lip differentiation underlies medulloblastoma formation. Hendrikse LD, Haldipur P, Saulnier O, Millman J, Sjoboen AH, Erickson AW, Ong W, Gordon V, Coudiere-Morrison L, Mercier AL, Shokouhian M, Suarez RA, Ly M, Borlase S, Scott DS, Vladoiu MC, Farooq H, Sirbu O, Nakashima T, Nambu S, Funakoshi Y, Bahcheli A, Diaz-Mejia JJ, Golser J, Bach K, Phuong-Bao T, Skowron P, Wang EY, Kumar SA, Balin P, Visvanathan A, Lee JJY, Ayoub R, Chen X, Chen X, Mungall KL, Luu B, Berube P, Wang YC, Pfister SM, Kim SK, Delattre O, Bourdeaut F, Doz F, Masliah-Planchon J, Grajkowska WA, Loukides J, Dirks P, Fevre-Montange M, Jouvet A, French PJ, Kros JM, Zitterbart K, Bailey SD, Eberhart CG, Rao AAN, Giannini C, Olson JM, Garami M, Hauser P, Phillips JJ, Ra YS, de Torres C, Mora J, Li KKW, Ng HK, Poon WS, Pollack IF, Lopez-Aguilar E, Gillespie GY, Van Meter TE, Shofuda T, Vibhakar R, Thompson RC, Cooper MK, Rubin JB, Kumabe T, Jung S, Lach B, Iolascon A, Ferrucci V, de Antonellis P, Zollo M, Cinalli G, Robinson S, Stearns DS, Van Meir EG, Porrati P, Finocchiaro G, Massimino M, Carlotti CG, Faria CC, Roussel MF, Boop F, Chan JA, Aldinger KA, Razavi F, Silvestri E, McLendon RE, Thompson EM, Ansari M, Garre ML, Chico F, Eguia P, Perezpena M, Morrissy AS, Cavalli FMG, Wu X, Daniels C, Rich JN, Jones SJM, Moore RA, Marra MA, Huang X, Reimand J, Sorensen PH, Wechsler-Reya RJ, Weiss WA, Pugh TJ, Garzia L, Kleinman CL, Stein LD, Jabado N, Malkin D, Ayrault O, Golden JA, Ellison DW, Doble B, Ramaswamy V, Werbowetski-Ogilvie TE, Suzuki H, Millen KJ, Taylor MD. Nature. 2022 Sep;609(7929):1021-1028. doi: 10.1038/s41586-022-05215-w. Epub 2022 Sep 21. PubMed |
| The Drosophila ZAD zinc finger protein Kipferl guides Rhino to piRNA clusters. Baumgartner L, Handler D, Platzer SW, Yu C, Duchek P, Brennecke J. Elife. 2022 Oct 4;11:e80067. doi: 10.7554/eLife.80067. PubMed |
| Identification of new components of the basal pole of Toxoplasma gondii provides novel insights into its molecular organization and functions. Roumegous C, Abou Hammoud A, Fuster D, Dupuy JW, Blancard C, Salin B, Robinson DR, Renesto P, Tardieux I, Frenal K. Front Cell Infect Microbiol. 2022 Oct 13;12:1010038. doi: 10.3389/fcimb.2022.1010038. eCollection 2022. PubMed |
| A transcriptional switch controls sex determination in Plasmodium falciparum. Gomes AR, Marin-Menendez A, Adjalley SH, Bardy C, Cassan C, Lee MCS, Talman AM. Nature. 2022 Dec;612(7940):528-533. doi: 10.1038/s41586-022-05509-z. Epub 2022 Dec 7. PubMed |
| Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP-1 shapes 3D enhancer landscapes. Wolf BK, Zhao Y, McCray A, Hawk WH, Deary LT, Sugiarto NW, LaCroix IS, Gerber SA, Cheng C, Wang X. Nat Struct Mol Biol. 2023 Jan;30(1):10-21. doi: 10.1038/s41594-022-00880-x. Epub 2022 Dec 15. PubMed |
| TurboID-based proteomic profiling of meiotic chromosome axes in Arabidopsis thaliana. Feng C, Roitinger E, Hudecz O, Cuacos M, Lorenz J, Schubert V, Wang B, Wang R, Mechtler K, Heckmann S. Nat Plants. 2023 Apr;9(4):616-630. doi: 10.1038/s41477-023-01371-7. Epub 2023 Mar 13. PubMed |
The viral packaging motor potentiates Kaposi's sarcoma-associated herpesvirus gene expression late in infection.
McCollum CO, Didychuk AL, Liu D, Murray-Nerger LA, Cristea IM, Glaunsinger BA.
PLoS Pathog. 2023 Apr 17;19(4):e1011163. doi: 10.1371/journal.ppat.1011163. eCollection 2023 Apr.
PubMed
Associated Plasmids |
| Interaction of ROMK2 channel with lipid kinases DGKE and AGK: Potential channel activation by localized anionic lipid synthesis. Krajewska M, Mozajew M, Filipek S, Koprowski P. Biochim Biophys Acta Mol Cell Biol Lipids. 2024 Mar;1869(2):159443. doi: 10.1016/j.bbalip.2023.159443. Epub 2023 Dec 4. PubMed |
Proteogenomic analysis reveals cytoplasmic sequestration of RUNX1 by the acute myeloid leukemia-initiating CBFB::MYH11 oncofusion protein.
Day RB, Hickman JA, Xu Z, Katerndahl CD, Ferraro F, Ramakrishnan SM, Erdmann-Gilmore P, Sprung RW, Mi Y, Townsend RR, Miller CA, Ley TJ.
J Clin Invest. 2023 Dec 7:e176311. doi: 10.1172/JCI176311.
PubMed
Associated Plasmids |
| Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance. Turan G, Olgun CE, Ayten H, Toker P, Ashyralyyev A, Savas B, Karaca E, Muyan M. Protein Sci. 2024 Feb;33(2):e4859. doi: 10.1002/pro.4859. PubMed |
| Chromatin targeting of the RNF12/RLIM E3 ubiquitin ligase controls transcriptional responses. Espejo-Serrano C, Aitken C, Tan BF, May DG, Chrisopulos RJ, Roux KJ, Demmers JA, Mackintosh SG, Gribnau J, Bustos F, Gontan C, Findlay GM. Life Sci Alliance. 2024 Jan 10;7(3):e202302282. doi: 10.26508/lsa.202302282. Print 2024 Mar. PubMed |
| D-type cyclins regulate DNA mismatch repair in the G1 and S phases of the cell cycle, maintaining genome stability. Rona G, Miwatani-Minter B, Zhang Q, Goldberg HV, Kerzhnerman MA, Howard JB, Simoneschi D, Lane E, Hobbs JW, Sassani E, Wang AA, Keegan S, Laverty DJ, Piett CG, Pongor LS, Xu ML, Andrade J, Thomas A, Sicinski P, Askenazi M, Ueberheide B, Fenyo D, Nagel ZD, Pagano M. bioRxiv [Preprint]. 2024 Jan 13:2024.01.12.575420. doi: 10.1101/2024.01.12.575420. PubMed |
CDK-independent role of D-type cyclins in regulating DNA mismatch repair.
Rona G, Miwatani-Minter B, Zhang Q, Goldberg HV, Kerzhnerman MA, Howard JB, Simoneschi D, Lane E, Hobbs JW, Sassani E, Wang AA, Keegan S, Laverty DJ, Piett CG, Pongor LS, Xu ML, Andrade J, Thomas A, Sicinski P, Askenazi M, Ueberheide B, Fenyo D, Nagel ZD, Pagano M.
Mol Cell. 2024 Feb 29:S1097-2765(24)00129-1. doi: 10.1016/j.molcel.2024.02.010.
PubMed
Associated Plasmids |
| Vertebrate centromeres in mitosis are functionally bipartite structures stabilized by cohesin. Sacristan C, Samejima K, Ruiz LA, Deb M, Lambers MLA, Buckle A, Brackley CA, Robertson D, Hori T, Webb S, Kiewisz R, Bepler T, van Kwawegen E, Risteski P, Vukusic K, Tolic IM, Muller-Reichert T, Fukagawa T, Gilbert N, Marenduzzo D, Earnshaw WC, Kops GJPL. Cell. 2024 Jun 6;187(12):3006-3023.e26. doi: 10.1016/j.cell.2024.04.014. Epub 2024 May 13. PubMed |
| A UL26-PIAS1 complex antagonizes anti-viral gene expression during Human Cytomegalovirus infection. Ciesla J, Huang KL, Wagner EJ, Munger J. PLoS Pathog. 2024 May 20;20(5):e1012058. doi: 10.1371/journal.ppat.1012058. eCollection 2024 May. PubMed |
| Rab30 facilitates lipid homeostasis during fasting. Smith DM, Liu BY, Wolfgang MJ. Nat Commun. 2024 May 25;15(1):4469. doi: 10.1038/s41467-024-48959-x. PubMed |
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